TCONS_00013449 (transcript) - C. hemisphaerica

Overview
NameTCONS_00013449
Unique NameTCONS_00013449
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length238

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00013449 ID=TCONS_00013449|Name=TCONS_00013449|organism=Clytia hemisphaerica|type=transcript|length=238bp
NNGAAGAGTTAAATATTACGTAAAGGAAATTGCTCCAGCGTGAAATTTAT
GCCATAATGTATTTATAGAACCCAAAACTAAATTAAGCTGCAAAAGACCT
GGAAACTAGGCAGcaacaaataacaataaaaccgGATGAAACACTACTTT
TGAGCATCTGTTTTCGTGGAAAAGCAAGCGTGATAAaaaattggtttggt
tttgtcaatttcaatttctcacGACACAATTTTCAGTN
Run BLAST on NCBI

transcript from alignment at sc0000167:416818..417055

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00013449 ID=TCONS_00013449|Name=TCONS_00013449|organism=Clytia hemisphaerica|type=transcript|length=238bp|location=Sequence derived from alignment at sc0000167:416818..417055 (Clytia hemisphaerica)
NACTGAAAATTGTGTCgtgagaaattgaaattgacaaaaccaaaccaatt
ttTTATCACGCTTGCTTTTCCACGAAAACAGATGCTCAAAAGTAGTGTTT
CATCcggttttattgttatttgttgCTGCCTAGTTTCCAGGTCTTTTGCA
GCTTAATTTAGTTTTGGGTTCTATAAATACATTATGGCATAAATTTCACG
CTGGAGCAATTTCCTTTACGTAATATTTAACTCTTCNN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007519XLOC_007519Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00013449-exon-sc0000167-1491911889:416818..417055TCONS_00013449-exon-sc0000167-1491911889:416818..417055Clytia hemisphaericaexon
TCONS_00013449-exon-sc0000167-1510915933:416818..417055TCONS_00013449-exon-sc0000167-1510915933:416818..417055Clytia hemisphaericaexon
TCONS_00013449-exon-sc0000167-1575043694:416818..417055TCONS_00013449-exon-sc0000167-1575043694:416818..417055Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000167supercontigsc0000167:416818..417055 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.928871	1.81159	0	2.05788	18.7895	17.8173	58.5163	50.3102	108.018	95.0161	87.5196	34.0243	6.79539	16.0388	26.8996	22.0751	1.3946	7.1471	15.7986	5.16627	8.08277	5.25665	3.19508	2.90479	0	9.79061	11.463	2.71858	7.21682	5.252
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00013449 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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