TCONS_00013448 (transcript) - C. hemisphaerica

Overview
NameTCONS_00013448
Unique NameTCONS_00013448
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length468

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00013448 ID=TCONS_00013448|Name=TCONS_00013448|organism=Clytia hemisphaerica|type=transcript|length=468bp
ATAAAGATACATTAGTTTCATGTGCCAAGCGGGTTGGAATAACATCAAGT
GGATTGAGCGTAAACTTCATGCAGCAAGATAAGTTTGACAGAGCAGTATA
TAAGAAGAAATCTCTCCATCAACATCTAAATCGACTCCAGTCTCATCACT
CATCATGTCTCCTTCtgacaaaagaaaaggttcTCTTGATTATTGGAAGG
CTAAATTTGACCAGGCTCAGTCCCTGATAAGGGAGATGGCAGAAAGAAGC
ATCCAACTGGAGGAaattcctggccttctgacaaTAAAGAAGGTTAAGCc
aaatgaagaaaagaaagCAACCACAACTACAAGGGTGACTCAGGTACACA
GCTCAACAAGGGCTAAAGAtgtagcaaccaaggtcaaagAAATCAGGGAT
GAGAAACTGAAGAAGGAAACGGAAAAAGAAGAAGCAAAGAAGAAGAGAGA
GGAGATCAGAGAAACATT
Run BLAST on NCBI

protein sequence of TCONS_00013448-protein

>TCONS_00013448-protein ID=TCONS_00013448-protein|Name=TCONS_00013448-protein|organism=Clytia hemisphaerica|type=polypeptide|length=104bp
MSPSDKRKGSLDYWKAKFDQAQSLIREMAERSIQLEEIPGLLTIKKVKPN
EEKKATTTTRVTQVHSSTRAKDVATKVKEIRDEKLKKETEKEEAKKKREE
IRET
Run BLAST on NCBI

transcript from alignment at sc0000167:390193..390660

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00013448 ID=TCONS_00013448|Name=TCONS_00013448|organism=Clytia hemisphaerica|type=transcript|length=468bp|location=Sequence derived from alignment at sc0000167:390193..390660 (Clytia hemisphaerica)
AATGTTTCTCTGATCTCCTCTCTCTTCTTCTTTGCTTCTTCTTTTTCCGT
TTCCTTCTTCAGTTTCTCATCCCTGATTTctttgaccttggttgctacaT
CTTTAGCCCTTGTTGAGCTGTGTACCTGAGTCACCCTTGTAGTTGTGGTT
GctttcttttcttcatttgGCTTAACCTTCTTTAttgtcagaaggccagg
aattTCCTCCAGTTGGATGCTTCTTTCTGCCATCTCCCTTATCAGGGACT
GAGCCTGGTCAAATTTAGCCTTCCAATAATCAAGAgaaccttttcttttg
tcaGAAGGAGACATGATGAGTGATGAGACTGGAGTCGATTTAGATGTTGA
TGGAGAGATTTCTTCTTATATACTGCTCTGTCAAACTTATCTTGCTGCAT
GAAGTTTACGCTCAATCCACTTGATGTTATTCCAACCCGCTTGGCACATG
AAACTAATGTATCTTTAT

Coding sequence (CDS) from alignment at sc0000167:390193..390660

>TCONS_00013448 ID=TCONS_00013448|Name=TCONS_00013448|organism=Clytia hemisphaerica|type=CDS|length=312bp|location=Sequence derived from alignment at sc0000167:390193..390660 (Clytia hemisphaerica)
TGTTTCTCTGATCTCCTCTCTCTTCTTCTTTGCTTCTTCTTTTTCCGTTT
CCTTCTTCAGTTTCTCATCCCTGATTTctttgaccttggttgctacaTCT
TTAGCCCTTGTTGAGCTGTGTACCTGAGTCACCCTTGTAGTTGTGGTTGc
tttcttttcttcatttgGCTTAACCTTCTTTAttgtcagaaggccaggaa
ttTCCTCCAGTTGGATGCTTCTTTCTGCCATCTCCCTTATCAGGGACTGA
GCCTGGTCAAATTTAGCCTTCCAATAATCAAGAgaaccttttcttttgtc
aGAAGGAGACAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007518XLOC_007518Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00013448-proteinTCONS_00013448-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00013448-exon-sc0000167-1491911889:390193..390660TCONS_00013448-exon-sc0000167-1491911889:390193..390660Clytia hemisphaericaexon
TCONS_00013448-exon-sc0000167-1510915933:390193..390660TCONS_00013448-exon-sc0000167-1510915933:390193..390660Clytia hemisphaericaexon
TCONS_00013448-exon-sc0000167-1575043694:390193..390660TCONS_00013448-exon-sc0000167-1575043694:390193..390660Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000167supercontigsc0000167:390193..390660 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.23022	3.25196	2.4658	2.60577	1.2666	0.831915	0.511075	1.44249	0	0.650595	0.143214	0.897989	0.776594	0.713546	0.32836	0.258613	0.10283	0.146927	0.481133	0	0.75255	1.10598	0.277562	0	1.69988	2.81705	0.353129	1.1251	0.816366	0.24063
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00013448 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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