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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00013446 ID=TCONS_00013446|Name=TCONS_00013446|organism=Clytia hemisphaerica|type=transcript|length=2754bp
TTGTGGAGTTAATAATCGTTAATTGTTTTATTGGAGAAATattgtttatt
gttttgttgGAGATATTGTTTTATGGTTACCAACAACAAGGTAACTTACT
TCAATTTTCATGGTAGCAGAGAAAAATGGCAACATCAGTATCATATAATA
AAGCTCCTCCTCTGCTATCCCAAAGTAAGAACTATGAGGATTGGAAGAAA
TTAATTGGAATTTGGACGGAGCTTACAACATTAGACAAAAAGAAGCAAGG
ACCGTCCCTTGTACTCACTCTTGACGGGAAATCACAAGAAGCTGCATTGG
AACTTTCGAGAGAGCAGATATCTTCTGAAGATGGAGTTCAAAACATCATC
AATAGGCTTGATAAGATCTATGCAAAGGATAAGTTGACAGAAAAGTTTGA
TGCCATTGAGAAATTTGAGACTTATAANTTAGTTTACGAAGATGTGAGAC
AAAAGctaataaaagtttttgcagAAGAGTCTATCGAAGGAGATTTAGAA
AGCAGTATGTCTTCTGTAAAAATCAAGTCAGAGCCTGCGTTTTATACAAA
TGAGGCCCACCCAGACGATTACCAACCAACATCATCAGATGAAGAAGGTG
TGTATTATGTTAAACGTAATTACAACCAAAGATTTTCCtcatcaaaattc
aataaaaaaggaaataattGGCGCCAGGAGAAACCTGCTGTTCGAACTAA
GGCAGATTATTCGAGAAAACCTGGCAAAAATCCACTTGACAAGAATGGCC
GTGTTTCTAGATGTGTGATATGTGAAAGCGTATACCATTGGCAACAAGAC
TGCCCAGAGAAACAAAATGATACGTACATGGTACATGAAATCGTCCTTCA
TAATGAAAGCAACAAACCAGGTCAACTTAAACATCTAGTATCAGAAACTT
GGAATTGTGGCTTGCTCGATTGTGGTGCCAGTAAGACGGTTTGTGGAGAT
GTTTGGCTTGAACAATATGTCAACTCTTTATCTGATGAAGAAAAGAGAGA
GGTAAAGCATCATCACAGTAAAAGCCTATATCGCTTCGGAGACGGAGAAC
AAGTCCAGGCTTGTGGAAGAGTCTCAATCCCTGCTATTATCGGCAACACA
AAGGTCAAGATAAACACAGACGTCATACCAAAGGACTTACCCTTGTTACT
ATCAAAATCATTCATGAAAAGAGCTGACATGATCCTGGATTTTCAGAATG
ACAGTGCAAATGCATTGGGGGAAACTGTTCACCTAGCAACAACTTCAAGT
GGACATTATACCATTCCTCTGACCAAACCACGTCAAATAATTGCTTCAAT
AGACAAGCCTTTTGAATgcaattttgttttcatttcgaAAGAGGACAAAA
ACATGTCCTCGATTGCTGAAAAACTTCACCGGCAGTTTGCTCACCCATCT
CTCAACCAAATCTTGTCTCTTATCAATAAAGCAGGGGCACCATGGAGTAA
CAGCAAGGAGTTGATATCAGAAATCAAAAGAGTAGACAAGGAATGTACAA
CATGCCAAATCTACAGAAGATCACCACCTCGTCCTGTTGTTGGATTACCC
ATGGcatcaaaatttcttgaaacAGTTGCCATGGACTTGAAATTCTACGA
TAAGAAAATAATTCTCCATCTTATCGATATGTGTACTCGCTTGTCAGCTG
CAACGACTATAAAGGATAAAAATCCTACCACGGTTATTGAGGCAATACTA
AAAACGTGGATATCCGTCTATGGCTCATGTGAGAAGTTCCTTGTGGATAA
TGGAGGTGAGTTTGCAAATGAGGAATTAATCAATCTAGCAGAACAGTTTG
GAATCACGATAAAGACTACTGCGGCTGAATCTCCCTGGTCAAATGGCATT
GTAGAAAGACATAATCAAACACTTTCCAACATGCTTGATAAAGTACTAAA
CGATACAAAGTGCAGCATTAACACTGCCCTTTATTGGTGTGTAAATGCAA
AGAATTCACTGCATAACGNGCTTTATCAGGGAAACCAGCCACACAAATGA
TGAAAGAAAACCTTGAAGTACTTCACAAAGCAAGAGAAGCCTTTATTGCA
AGCGAACACTCAGAGAGAATACGTCGCGCCTTAGCCCACAACATTAGGAC
TTCAGGAGAAATCAAGTACCTTACAGGAGATCGTGTATACTACAAGAGAA
ATGATAGCAACAAATGGAAGGGTCCTGGAACTGTGCTTGGTCAGGACGGT
CAGCAAATTCTAGTCAAACATGGGAGTTACTATGTTTGTGTTCATCCTTG
TCGCGCTAAATTGGTACATGAAAACGACAAACCTATTCATTCAGAGGAGA
AAACGGAAACGAACGACGACCAGTACCACTGAAGAAAGACTCCCAAGATT
AAACATTCCAAACGTGAGCCATCAATCATCAGAAGAATCAGAATCAGACG
TAGAAGATTCTCTAACACCCATCAATAATGATCCACCAACTACACCTACC
CAGCAATTACAAACTCAATCCACTTCAGTTGAGACACACAATCCTCCTCA
AAAGGAACAACTTAAACTGAAACCTAATCTTTGTCTCAAGTATAAAGACA
ACGATGGAGAGTGGCAAAAGGCCCGAATCCTTTCAAGGGTAGGAAAAGTT
GGGGGAAAGCATGAAGGCTGGTTTAATGTAGAGACAGAAACTGGGATGAA
GAGATCAATAAACTTTGCAAAGATCAAAGACATTGAAATTAATGAAAGTC
CCGAAGAAGTTACTCTGATTGCCAACAATGATGAAATAATCAGAGCAAAA
TCAA Run BLAST on NCBI protein sequence of TCONS_00013446-protein >TCONS_00013446-protein ID=TCONS_00013446-protein|Name=TCONS_00013446-protein|organism=Clytia hemisphaerica|type=polypeptide|length=624bp
MATSVSYNKAPPLLSQSKNYEDWKKLIGIWTELTTLDKKKQGPSLVLTLD
GKSQEAALELSREQISSEDGVQNIINRLDKIYAKDKLTEKFDAIEKFETY
XLVYEDVRQKLIKVFAEESIEGDLESSMSSVKIKSEPAFYTNEAHPDDYQ
PTSSDEEGVYYVKRNYNQRFSSSKFNKKGNNWRQEKPAVRTKADYSRKPG
KNPLDKNGRVSRCVICESVYHWQQDCPEKQNDTYMVHEIVLHNESNKPGQ
LKHLVSETWNCGLLDCGASKTVCGDVWLEQYVNSLSDEEKREVKHHHSKS
LYRFGDGEQVQACGRVSIPAIIGNTKVKINTDVIPKDLPLLLSKSFMKRA
DMILDFQNDSANALGETVHLATTSSGHYTIPLTKPRQIIASIDKPFECNF
VFISKEDKNMSSIAEKLHRQFAHPSLNQILSLINKAGAPWSNSKELISEI
KRVDKECTTCQIYRRSPPRPVVGLPMASKFLETVAMDLKFYDKKIILHLI
DMCTRLSAATTIKDKNPTTVIEAILKTWISVYGSCEKFLVDNGGEFANEE
LINLAEQFGITIKTTAAESPWSNGIVERHNQTLSNMLDKVLNDTKCSINT
ALYWCVNAKNSLHNXLYQGNQPHK Run BLAST on NCBI transcript from alignment at sc0000167:332151..334904 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00013446 ID=TCONS_00013446|Name=TCONS_00013446|organism=Clytia hemisphaerica|type=transcript|length=2754bp|location=Sequence derived from alignment at sc0000167:332151..334904 (Clytia hemisphaerica)
TTGATTTTGCTCTGATTATTTCATCATTGTTGGCAATCAGAGTAACTTCT
TCGGGACTTTCATTAATTTCAATGTCTTTGATCTTTGCAAAGTTTATTGA
TCTCTTCATCCCAGTTTCTGTCTCTACATTAAACCAGCCTTCATGCTTTC
CCCCAACTTTTCCTACCCTTGAAAGGATTCGGGCCTTTTGCCACTCTCCA
TCGTTGTCTTTATACTTGAGACAAAGATTAGGTTTCAGTTTAAGTTGTTC
CTTTTGAGGAGGATTGTGTGTCTCAACTGAAGTGGATTGAGTTTGTAATT
GCTGGGTAGGTGTAGTTGGTGGATCATTATTGATGGGTGTTAGAGAATCT
TCTACGTCTGATTCTGATTCTTCTGATGATTGATGGCTCACGTTTGGAAT
GTTTAATCTTGGGAGTCTTTCTTCAGTGGTACTGGTCGTCGTTCGTTTCC
GTTTTCTCCTCTGAATGAATAGGTTTGTCGTTTTCATGTACCAATTTAGC
GCGACAAGGATGAACACAAACATAGTAACTCCCATGTTTGACTAGAATTT
GCTGACCGTCCTGACCAAGCACAGTTCCAGGACCCTTCCATTTGTTGCTA
TCATTTCTCTTGTAGTATACACGATCTCCTGTAAGGTACTTGATTTCTCC
TGAAGTCCTAATGTTGTGGGCTAAGGCGCGACGTATTCTCTCTGAGTGTT
CGCTTGCAATAAAGGCTTCTCTTGCTTTGTGAAGTACTTCAAGGTTTTCT
TTCATCATTTGTGTGGCTGGTTTCCCTGATAAAGCNCGTTATGCAGTGAA
TTCTTTGCATTTACACACCAATAAAGGGCAGTGTTAATGCTGCACTTTGT
ATCGTTTAGTACTTTATCAAGCATGTTGGAAAGTGTTTGATTATGTCTTT
CTACAATGCCATTTGACCAGGGAGATTCAGCCGCAGTAGTCTTTATCGTG
ATTCCAAACTGTTCTGCTAGATTGATTAATTCCTCATTTGCAAACTCACC
TCCATTATCCACAAGGAACTTCTCACATGAGCCATAGACGGATATCCACG
TTTTTAGTATTGCCTCAATAACCGTGGTAGGATTTTTATCCTTTATAGTC
GTTGCAGCTGACAAGCGAGTACACATATCGATAAGATGGAGAATTATTTT
CTTATCGTAGAATTTCAAGTCCATGGCAACTgtttcaagaaattttgatg
CCATGGGTAATCCAACAACAGGACGAGGTGGTGATCTTCTGTAGATTTGG
CATGTTGTACATTCCTTGTCTACTCTTTTGATTTCTGATATCAACTCCTT
GCTGTTACTCCATGGTGCCCCTGCTTTATTGATAAGAGACAAGATTTGGT
TGAGAGATGGGTGAGCAAACTGCCGGTGAAGTTTTTCAGCAATCGAGGAC
ATGTTTTTGTCCTCTTtcgaaatgaaaacaaaattgcATTCAAAAGGCTT
GTCTATTGAAGCAATTATTTGACGTGGTTTGGTCAGAGGAATGGTATAAT
GTCCACTTGAAGTTGTTGCTAGGTGAACAGTTTCCCCCAATGCATTTGCA
CTGTCATTCTGAAAATCCAGGATCATGTCAGCTCTTTTCATGAATGATTT
TGATAGTAACAAGGGTAAGTCCTTTGGTATGACGTCTGTGTTTATCTTGA
CCTTTGTGTTGCCGATAATAGCAGGGATTGAGACTCTTCCACAAGCCTGG
ACTTGTTCTCCGTCTCCGAAGCGATATAGGCTTTTACTGTGATGATGCTT
TACCTCTCTCTTTTCTTCATCAGATAAAGAGTTGACATATTGTTCAAGCC
AAACATCTCCACAAACCGTCTTACTGGCACCACAATCGAGCAAGCCACAA
TTCCAAGTTTCTGATACTAGATGTTTAAGTTGACCTGGTTTGTTGCTTTC
ATTATGAAGGACGATTTCATGTACCATGTACGTATCATTTTGTTTCTCTG
GGCAGTCTTGTTGCCAATGGTATACGCTTTCACATATCACACATCTAGAA
ACACGGCCATTCTTGTCAAGTGGATTTTTGCCAGGTTTTCTCGAATAATC
TGCCTTAGTTCGAACAGCAGGTTTCTCCTGGCGCCaattatttccttttt
tattgaattttgatgaGGAAAATCTTTGGTTGTAATTACGTTTAACATAA
TACACACCTTCTTCATCTGATGATGTTGGTTGGTAATCGTCTGGGTGGGC
CTCATTTGTATAAAACGCAGGCTCTGACTTGATTTTTACAGAAGACATAC
TGCTTTCTAAATCTCCTTCGATAGACTCTTctgcaaaaacttttattagC
TTTTGTCTCACATCTTCGTAAACTAANTTATAAGTCTCAAATTTCTCAAT
GGCATCAAACTTTTCTGTCAACTTATCCTTTGCATAGATCTTATCAAGCC
TATTGATGATGTTTTGAACTCCATCTTCAGAAGATATCTGCTCTCTCGAA
AGTTCCAATGCAGCTTCTTGTGATTTCCCGTCAAGAGTGAGTACAAGGGA
CGGTCCTTGCTTCTTTTTGTCTAATGTTGTAAGCTCCGTCCAAATTCCAA
TTAATTTCTTCCAATCCTCATAGTTCTTACTTTGGGATAGCAGAGGAGGA
GCTTTATTATATGATACTGATGTTGCCATTTTTCTCTGCTACCATGAAAA
TTGAAGTAAGTTACCTTGTTGTTGGTAACCATAAAACAATATCTCcaaca
aaacaataaacaatATTTCTCCAATAAAACAATTAACGATTATTAACTCC
ACAA Coding sequence (CDS) from alignment at sc0000167:332151..334904 >TCONS_00013446 ID=TCONS_00013446|Name=TCONS_00013446|organism=Clytia hemisphaerica|type=CDS|length=1875bp|location=Sequence derived from alignment at sc0000167:332151..334904 (Clytia hemisphaerica)
TCATTTGTGTGGCTGGTTTCCCTGATAAAGCNCGTTATGCAGTGAATTCT
TTGCATTTACACACCAATAAAGGGCAGTGTTAATGCTGCACTTTGTATCG
TTTAGTACTTTATCAAGCATGTTGGAAAGTGTTTGATTATGTCTTTCTAC
AATGCCATTTGACCAGGGAGATTCAGCCGCAGTAGTCTTTATCGTGATTC
CAAACTGTTCTGCTAGATTGATTAATTCCTCATTTGCAAACTCACCTCCA
TTATCCACAAGGAACTTCTCACATGAGCCATAGACGGATATCCACGTTTT
TAGTATTGCCTCAATAACCGTGGTAGGATTTTTATCCTTTATAGTCGTTG
CAGCTGACAAGCGAGTACACATATCGATAAGATGGAGAATTATTTTCTTA
TCGTAGAATTTCAAGTCCATGGCAACTgtttcaagaaattttgatgCCAT
GGGTAATCCAACAACAGGACGAGGTGGTGATCTTCTGTAGATTTGGCATG
TTGTACATTCCTTGTCTACTCTTTTGATTTCTGATATCAACTCCTTGCTG
TTACTCCATGGTGCCCCTGCTTTATTGATAAGAGACAAGATTTGGTTGAG
AGATGGGTGAGCAAACTGCCGGTGAAGTTTTTCAGCAATCGAGGACATGT
TTTTGTCCTCTTtcgaaatgaaaacaaaattgcATTCAAAAGGCTTGTCT
ATTGAAGCAATTATTTGACGTGGTTTGGTCAGAGGAATGGTATAATGTCC
ACTTGAAGTTGTTGCTAGGTGAACAGTTTCCCCCAATGCATTTGCACTGT
CATTCTGAAAATCCAGGATCATGTCAGCTCTTTTCATGAATGATTTTGAT
AGTAACAAGGGTAAGTCCTTTGGTATGACGTCTGTGTTTATCTTGACCTT
TGTGTTGCCGATAATAGCAGGGATTGAGACTCTTCCACAAGCCTGGACTT
GTTCTCCGTCTCCGAAGCGATATAGGCTTTTACTGTGATGATGCTTTACC
TCTCTCTTTTCTTCATCAGATAAAGAGTTGACATATTGTTCAAGCCAAAC
ATCTCCACAAACCGTCTTACTGGCACCACAATCGAGCAAGCCACAATTCC
AAGTTTCTGATACTAGATGTTTAAGTTGACCTGGTTTGTTGCTTTCATTA
TGAAGGACGATTTCATGTACCATGTACGTATCATTTTGTTTCTCTGGGCA
GTCTTGTTGCCAATGGTATACGCTTTCACATATCACACATCTAGAAACAC
GGCCATTCTTGTCAAGTGGATTTTTGCCAGGTTTTCTCGAATAATCTGCC
TTAGTTCGAACAGCAGGTTTCTCCTGGCGCCaattatttccttttttatt
gaattttgatgaGGAAAATCTTTGGTTGTAATTACGTTTAACATAATACA
CACCTTCTTCATCTGATGATGTTGGTTGGTAATCGTCTGGGTGGGCCTCA
TTTGTATAAAACGCAGGCTCTGACTTGATTTTTACAGAAGACATACTGCT
TTCTAAATCTCCTTCGATAGACTCTTctgcaaaaacttttattagCTTTT
GTCTCACATCTTCGTAAACTAANTTATAAGTCTCAAATTTCTCAATGGCA
TCAAACTTTTCTGTCAACTTATCCTTTGCATAGATCTTATCAAGCCTATT
GATGATGTTTTGAACTCCATCTTCAGAAGATATCTGCTCTCTCGAAAGTT
CCAATGCAGCTTCTTGTGATTTCCCGTCAAGAGTGAGTACAAGGGACGGT
CCTTGCTTCTTTTTGTCTAATGTTGTAAGCTCCGTCCAAATTCCAATTAA
TTTCTTCCAATCCTCATAGTTCTTACTTTGGGATAGCAGAGGAGGAGCTT
TATTATATGATACTGATGTTGCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00013446-exon-sc0000167-1491911889:332151..334904 | TCONS_00013446-exon-sc0000167-1491911889:332151..334904 | Clytia hemisphaerica | exon |
| TCONS_00013446-exon-sc0000167-1510915933:332151..334904 | TCONS_00013446-exon-sc0000167-1510915933:332151..334904 | Clytia hemisphaerica | exon |
| TCONS_00013446-exon-sc0000167-1575043694:332151..334904 | TCONS_00013446-exon-sc0000167-1575043694:332151..334904 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000167 | supercontig | sc0000167:332151..334904 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0015074 | DNA integration |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0015074 |
DNA integration |
| molecular_function |
GO:0003676 |
nucleic acid binding |
Blast
The following BLAST results are available for this feature:
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