TCONS_00013443 (transcript) - C. hemisphaerica

Overview
NameTCONS_00013443
Unique NameTCONS_00013443
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length351

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00013443 ID=TCONS_00013443|Name=TCONS_00013443|organism=Clytia hemisphaerica|type=transcript|length=351bp
CAGAAATCCAGACAGTAGGAAATATATAAACATAATCATCTTATGTTTAG
CAAGAATATTCCTTTGGCTAGTAAAACTTTGAAGCAAAGCCAAATTTTGA
GGATGAATCTCTCCCTGTCACCTGTATGTAGGACACATGACTGCTCATGT
TTCAAAAGTATTTACCTATATAactataagcaaaaagctcgtacccatgt
CTTTTTTTAGCTATTAAAACATAATAATCTAAGTTAAGTTGTTTATAGGA
GATCTCCTCCTCTACAAAATCTAGGGAGCCACATGCTATATCCATAACAT
GTGTATCAAATCAAATCAGAAAGGAAATCATTTTGCTAATTGAAAGATAA
C
Run BLAST on NCBI

transcript from alignment at sc0000167:243066..243416

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00013443 ID=TCONS_00013443|Name=TCONS_00013443|organism=Clytia hemisphaerica|type=transcript|length=351bp|location=Sequence derived from alignment at sc0000167:243066..243416 (Clytia hemisphaerica)
GTTATCTTTCAATTAGCAAAATGATTTCCTTTCTGATTTGATTTGATACA
CATGTTATGGATATAGCATGTGGCTCCCTAGATTTTGTAGAGGAGGAGAT
CTCCTATAAACAACTTAACTTAGATTATTATGTTTTAATAGCTAAAAAAA
GacatgggtacgagctttttgcttatagtTATATAGGTAAATACTTTTGA
AACATGAGCAGTCATGTGTCCTACATACAGGTGACAGGGAGAGATTCATC
CTCAAAATTTGGCTTTGCTTCAAAGTTTTACTAGCCAAAGGAATATTCTT
GCTAAACATAAGATGATTATGTTTATATATTTCCTACTGTCTGGATTTCT
G
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007513XLOC_007513Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00013443-exon-sc0000167-1491911889:243066..243416TCONS_00013443-exon-sc0000167-1491911889:243066..243416Clytia hemisphaericaexon
TCONS_00013443-exon-sc0000167-1510915933:243066..243416TCONS_00013443-exon-sc0000167-1510915933:243066..243416Clytia hemisphaericaexon
TCONS_00013443-exon-sc0000167-1575043694:243066..243416TCONS_00013443-exon-sc0000167-1575043694:243066..243416Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000167supercontigsc0000167:243066..243416 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.01045	1.8903	1.74678	1.30402	0.642627	1.09843	4.62162e-09	0.760147	1.31021	1.65424	6.63912	0.386431	0.465267	0.615871	0.921079	0.995471	0	0.781517	0	2.39705	3.34855	1.67379	0	0.669551	1.76514	2.96868	2.78389	1.42096	1.25625	0.828203
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00013443 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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