TCONS_00013432 (transcript) - C. hemisphaerica

Overview
NameTCONS_00013432
Unique NameTCONS_00013432
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length447

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00013432 ID=TCONS_00013432|Name=TCONS_00013432|organism=Clytia hemisphaerica|type=transcript|length=447bp
GAGTTTGATGTACGAGTCGGATATTGAACTTTGTTACAGTATGTGGCAAA
GTTGGAATATCCAAGTTAATGAAAAGAGGAGCAGATTCTgcattaaaatc
tgaaaaagtcaAGATGCGCACGcatcttttttgaagtttgcctaTTCTAG
AGTTTTGAGTGAGATTTTGTCCCCATACGATTATTGCGTATGACAAATGA
GAGTGAAAAATAGCATAGTATAAAGTTTTAAGAATGGTCTGTGGAACAAA
GTGACGCAGTTTGGATAAAATGCCATTTGACCTTCTAAGTTTTGCGGATA
AATGATCAAAATGGAAATTACACGCTAGACATTCGTCGAGAAAAAGACCA
AGATATTTGACACATTTCGAAAATTTCAAGACATGCCCATCAAGATTGAA
ATTCATTGTATATGGTACAAGTTTATTTTTACTTCTAAACAGGATAA
Run BLAST on NCBI

protein sequence of TCONS_00013432-protein

>TCONS_00013432-protein ID=TCONS_00013432-protein|Name=TCONS_00013432-protein|organism=Clytia hemisphaerica|type=polypeptide|length=148bp
ILFRSKNKLVPYTMNFNLDGHVLKFSKCVKYLGLFLDECLACNFHFDHLS
AKLRRSNGILSKLRHFVPQTILKTLYYAIFHSHLSYAIIVWGQNLTQNSR
IGKLQKRCVRILTFSDFNAESAPLFINLDIPTLPHTVTKFNIRLVHQT
Run BLAST on NCBI

transcript from alignment at sc0000167:14126..14572

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00013432 ID=TCONS_00013432|Name=TCONS_00013432|organism=Clytia hemisphaerica|type=transcript|length=447bp|location=Sequence derived from alignment at sc0000167:14126..14572 (Clytia hemisphaerica)
TTATCCTGTTTAGAAGTAAAAATAAACTTGTACCATATACAATGAATTTC
AATCTTGATGGGCATGTCTTGAAATTTTCGAAATGTGTCAAATATCTTGG
TCTTTTTCTCGACGAATGTCTAGCGTGTAATTTCCATTTTGATCATTTAT
CCGCAAAACTTAGAAGGTCAAATGGCATTTTATCCAAACTGCGTCACTTT
GTTCCACAGACCATTCTTAAAACTTTATACTATGCTATTTTTCACTCTCA
TTTGTCATACGCAATAATCGTATGGGGACAAAATCTCACTCAAAACTCTA
GAAtaggcaaacttcaaaaaagatgCGTGCGCATCTtgactttttcagat
tttaatgcAGAATCTGCTCCTCTTTTCATTAACTTGGATATTCCAACTTT
GCCACATACTGTAACAAAGTTCAATATCCGACTCGTACATCAAACTC

Coding sequence (CDS) from alignment at sc0000167:14126..14572

>TCONS_00013432 ID=TCONS_00013432|Name=TCONS_00013432|organism=Clytia hemisphaerica|type=CDS|length=444bp|location=Sequence derived from alignment at sc0000167:14126..14572 (Clytia hemisphaerica)
ATCCTGTTTAGAAGTAAAAATAAACTTGTACCATATACAATGAATTTCAA
TCTTGATGGGCATGTCTTGAAATTTTCGAAATGTGTCAAATATCTTGGTC
TTTTTCTCGACGAATGTCTAGCGTGTAATTTCCATTTTGATCATTTATCC
GCAAAACTTAGAAGGTCAAATGGCATTTTATCCAAACTGCGTCACTTTGT
TCCACAGACCATTCTTAAAACTTTATACTATGCTATTTTTCACTCTCATT
TGTCATACGCAATAATCGTATGGGGACAAAATCTCACTCAAAACTCTAGA
AtaggcaaacttcaaaaaagatgCGTGCGCATCTtgactttttcagattt
taatgcAGAATCTGCTCCTCTTTTCATTAACTTGGATATTCCAACTTTGC
CACATACTGTAACAAAGTTCAATATCCGACTCGTACATCAAACT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007502XLOC_007502Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00013432-proteinTCONS_00013432-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00013432-exon-sc0000167-1491911889:14126..14572TCONS_00013432-exon-sc0000167-1491911889:14126..14572Clytia hemisphaericaexon
TCONS_00013432-exon-sc0000167-1510915933:14126..14572TCONS_00013432-exon-sc0000167-1510915933:14126..14572Clytia hemisphaericaexon
TCONS_00013432-exon-sc0000167-1575043694:14126..14572TCONS_00013432-exon-sc0000167-1575043694:14126..14572Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000167supercontigsc0000167:14126..14572 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.713222	1.20366	0.438929	1.36745	1.82822	1.10992	0	1.05988	0	1.73834	0.621935	0.349037	0.274526	0.270252	0.169289	0.380775	0.581714	0.344454	0	0.594386	1.17249	0	0.216334	0.957807	2.14805	2.00186	1.2024	0.984122	0	0.181788
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00013432 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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