TCONS_00013400 (transcript) - C. hemisphaerica

Overview
NameTCONS_00013400
Unique NameTCONS_00013400
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length709

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00013400 ID=TCONS_00013400|Name=TCONS_00013400|organism=Clytia hemisphaerica|type=transcript|length=709bp
ATTTTGTATATGTTAGAGAAGTGGGTCCAGATCTGATAAGAAATTTCATA
GACAATTTGAAACGACAGAGTCtaattttacaagaaaaaattattggagt
gaatATTTTATTTGGCCTCCGATCAAAGCTTGCGTAATATTTCTGATTaa
atgactttcaaaaaatgaattttttgcagGAGTTATTGTTTCTAATTATC
GCTTATAAGCTATTTCCAGTCGTTCAAACGGTGATTGATGATGGTGTATC
ATTAGCTGATAAGACCACGTACGCACATAACAAAGTCCGTTATTTACACG
CTGTCCAGGATATGGTATGGGATCAAGAATTAGCAGATAATTCGAAAGCG
TGGGCTGATTTATTAGCTTCAGAAAACAGTCTTCATCACTCTGAAGGCTC
CAAAATGGGAATGTATGGGGAAAATCTTTACAAAGGTTTCGATGGtttca
aaaatgagaaaactgtCGCAGATGCCGTTTATAATTGGTACATAGAAATC
GAAGGGTACAATTTCAACGATCCAGCACCAGATTTGGATATCCATGGACA
TTTTACAGCGCTTGTATGGAGGACAACAATACGAGTTGGTTGTGCCATCA
CTTCCAGGGAACTATATGGTGGCTTATTCACTTTCATTGTATGCCAGTAT
CTACCCTCTGGTAACGTTAATGGCTTCTTCTTGTCCAATGTTATGCAGTT
AAGGTTTGG
Run BLAST on NCBI

protein sequence of TCONS_00013400-protein

>TCONS_00013400-protein ID=TCONS_00013400-protein|Name=TCONS_00013400-protein|organism=Clytia hemisphaerica|type=polypeptide|length=181bp
MNFLQELLFLIIAYKLFPVVQTVIDDGVSLADKTTYAHNKVRYLHAVQDM
VWDQELADNSKAWADLLASENSLHHSEGSKMGMYGENLYKGFDGFKNEKT
VADAVYNWYIEIEGYNFNDPAPDLDIHGHFTALVWRTTIRVGCAITSREL
YGGLFTFIVCQYLPSGNVNGFFLSNVMQLRF
Run BLAST on NCBI

transcript from alignment at sc0000167:449055..450187+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00013400 ID=TCONS_00013400|Name=TCONS_00013400|organism=Clytia hemisphaerica|type=transcript|length=1133bp|location=Sequence derived from alignment at sc0000167:449055..450187+ (Clytia hemisphaerica)
ATTTTGTATATGTTAGAGAAGTGGGTCCAGATCTGATAAGAAATTTCATA
GACAATTTGAAACGACAGAGTCtaattttacaagaaaaaattattggagt
gaatATTTTATTTGGCCTCCGATCAAAGCTTGCGTAATATTTCTGATTaa
atgactttcaaaaaatgaattttttgcagGAGTTATTGTTTCTAATTATC
GCTTATAAGCTATTTCCAGTCGTTCAAACGGTGATTGATGATGGTGTATC
ATTAGCTGATAAGACCACGTACGCACATAACAAAGTCCGTTATTTACACG
CTGTCCAGGATATGGTATGGGATCAAGAATTAGCAGATAATTCGAAAGCG
TGGGCTGATTTATTAGCTTCAGAAAACAGTCTTCATCACTCTGAAGGCTC
CAAAATGGGAATGTATGGGGAAAATCTTTACAAAGGTTTCGATGGtttca
aaaatgagaaaactgtCGCAGATGCCGTTTATAATTGGTAAGGATTGTGT
TCCATGACTTTTGCaatcacccctgtctcagtgatccGTTGAGCGGCACA
AATCTGTGTGAAAAACCTTTTCTCaggagatatgcaaaattgtcTTTCCC
AGTGACAGAGGAAGTGAATTCGCATTCTCTATCAAAATTTACAACCAATA
TTCCCACTGCATACTATTTTGAGAAACACTTTATCATTTCAACTTCTTTA
AAGGTACATAGAAATCGAAGGGTACAATTTCAACGATCCAGCACCAGATT
TGGATATCCATGGACATTTTACAGCGGTAAGTTTTTAAGATTGCAAACAT
TCTAAACATCTCAGATACGTAAAATGAAGACTATTCcagttgaaaatttt
gaaaaagattataTAGGCTCATAATTTTAGCTTTAtcttagacgatccta
tcgtctacacaaaatCATCACTAGGGATTGATTCAAATTGAGATCTGGCT
GAGCATGATTTTTATCTAACATATATGTTGATAGCTTGTATGGAGGACAA
CAATACGAGTTGGTTGTGCCATCACTTCCAGGGAACTATATGGTGGCTTA
TTCACTTTCATTGTATGCCAGTATCTACCCTCTGGTAACGTTAATGGCTT
CTTCTTGTCCAATGTTATGCAGTTAAGGTTTGG

Coding sequence (CDS) from alignment at sc0000167:449055..450187+

>TCONS_00013400 ID=TCONS_00013400|Name=TCONS_00013400|organism=Clytia hemisphaerica|type=CDS|length=1629bp|location=Sequence derived from alignment at sc0000167:449055..450187+ (Clytia hemisphaerica)
atgaattttttgcagGAGTTATTGTTTCTAATTATCGCTTATAAGCTATT
TCCAGTCGTTCAAACGGTGATTGATGATGGTGTATCATTAGCTGATAAGA
CCACGTACGCACATAACAAAGTCCGTTATTTACACGCTGTCCAGGATATG
GTATGGGATCAAGAATTAGCAGATAATTCGAAAGCGTGGGCTGATTTATT
AGCTTCAGAAAACAGTCTTCATCACTCTGAAGGCTCCAAAATGGGAATGT
ATGGGGAAAATCTTTACAAAGGTTTCGATGGtttcaaaaatgagaaaact
gtCGCAGATGCCGTTTATAATTGGTACATAGAAATCGAAGGGTACAATTT
CAACGATCCAGCACCAGATTTGGATATCCATGGACATTTTACAGCGCTTG
TATGGAGGACAACAATACGAGTTGGTTGTGCCATCACTTCCAGGGAACTA
TATGGTGGCTTATTCACTTTCATTGTATGCCAGTATCTACCCTCTGGTAA
CGTTAATGGCTTCTTCTTGTCCAATGTTATGCAGTTAAGGTTTatgaatt
ttttgcagGAGTTATTGTTTCTAATTATCGCTTATAAGCTATTTCCAGTC
GTTCAAACGGTGATTGATGATGGTGTATCATTAGCTGATAAGACCACGTA
CGCACATAACAAAGTCCGTTATTTACACGCTGTCCAGGATATGGTATGGG
ATCAAGAATTAGCAGATAATTCGAAAGCGTGGGCTGATTTATTAGCTTCA
GAAAACAGTCTTCATCACTCTGAAGGCTCCAAAATGGGAATGTATGGGGA
AAATCTTTACAAAGGTTTCGATGGtttcaaaaatgagaaaactgtCGCAG
ATGCCGTTTATAATTGGTACATAGAAATCGAAGGGTACAATTTCAACGAT
CCAGCACCAGATTTGGATATCCATGGACATTTTACAGCGCTTGTATGGAG
GACAACAATACGAGTTGGTTGTGCCATCACTTCCAGGGAACTATATGGTG
GCTTATTCACTTTCATTGTATGCCAGTATCTACCCTCTGGTAACGTTAAT
GGCTTCTTCTTGTCCAATGTTATGCAGTTAAGGTTTatgaattttttgca
gGAGTTATTGTTTCTAATTATCGCTTATAAGCTATTTCCAGTCGTTCAAA
CGGTGATTGATGATGGTGTATCATTAGCTGATAAGACCACGTACGCACAT
AACAAAGTCCGTTATTTACACGCTGTCCAGGATATGGTATGGGATCAAGA
ATTAGCAGATAATTCGAAAGCGTGGGCTGATTTATTAGCTTCAGAAAACA
GTCTTCATCACTCTGAAGGCTCCAAAATGGGAATGTATGGGGAAAATCTT
TACAAAGGTTTCGATGGtttcaaaaatgagaaaactgtCGCAGATGCCGT
TTATAATTGGTACATAGAAATCGAAGGGTACAATTTCAACGATCCAGCAC
CAGATTTGGATATCCATGGACATTTTACAGCGCTTGTATGGAGGACAACA
ATACGAGTTGGTTGTGCCATCACTTCCAGGGAACTATATGGTGGCTTATT
CACTTTCATTGTATGCCAGTATCTACCCTCTGGTAACGTTAATGGCTTCT
TCTTGTCCAATGTTATGCAGTTAAGGTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007487XLOC_007487Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00013400-proteinTCONS_00013400-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00013400-exon-sc0000167-1491911889:449055..449541TCONS_00013400-exon-sc0000167-1491911889:449055..449541Clytia hemisphaericaexon
TCONS_00013400-exon-sc0000167-1510915933:449055..449541TCONS_00013400-exon-sc0000167-1510915933:449055..449541Clytia hemisphaericaexon
TCONS_00013400-exon-sc0000167-1575043694:449055..449541TCONS_00013400-exon-sc0000167-1575043694:449055..449541Clytia hemisphaericaexon
TCONS_00013400-exon-sc0000167-1491911889:449758..449830TCONS_00013400-exon-sc0000167-1491911889:449758..449830Clytia hemisphaericaexon
TCONS_00013400-exon-sc0000167-1510915933:449758..449830TCONS_00013400-exon-sc0000167-1510915933:449758..449830Clytia hemisphaericaexon
TCONS_00013400-exon-sc0000167-1575043694:449758..449830TCONS_00013400-exon-sc0000167-1575043694:449758..449830Clytia hemisphaericaexon
TCONS_00013400-exon-sc0000167-1491911889:450039..450187TCONS_00013400-exon-sc0000167-1491911889:450039..450187Clytia hemisphaericaexon
TCONS_00013400-exon-sc0000167-1510915933:450039..450187TCONS_00013400-exon-sc0000167-1510915933:450039..450187Clytia hemisphaericaexon
TCONS_00013400-exon-sc0000167-1575043694:450039..450187TCONS_00013400-exon-sc0000167-1575043694:450039..450187Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000167supercontigsc0000167:449055..450187 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.669812	0.151227	0.0912245	0.0854032	0.41855	0.666568	0.790762	0.756095	5.25544	3.64017	3.9888	5.35406	2.79133	2.62061	0.527991	0.473575	4.32204	3.91512	2.39389	3.29188	3.04727	2.65163	0.778352	0.415339	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002413V5_allergen
IPR001283Allrgn_V5/Tpx1
IPR014044CAP_domain
IPR018244Allrgn_V5/Tpx1_CS
Vocabulary: Cellular Component
TermDefinition
GO:0005576extracellular region
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0005576 extracellular region
Blast
[Close]
BLAST of TCONS_00013400 vs. Swiss-Prot (Human)
Match: GAPR1 (Golgi-associated plant pathogenesis-related protein 1 OS=Homo sapiens GN=GLIPR2 PE=1 SV=3)

HSP 1 Score: 81.6481 bits (200), Expect = 6.313e-19
Identity = 54/144 (37.50%), Postives = 75/144 (52.08%), Query Frame = 3 
Query:  273 AHNKVRYLHAVQDMVWDQELADNSKAWADLLASENSLHHSEGSKMGMYGENL-YKGFDGFKNEKTVADAVYNWYIEIEGYNFNDPAPDLDIHGHFTALVWRTTIRVGCAITSRELYGGLFTFIVCQYLPSGNV--NGFFLSNVM 695
            AHN+ R  H V  +   + L   ++ +++ LAS   L HS  S  G  GENL +  +D  +  K VAD    WY EI+ YNF  P       GHFTA+VW+ T ++G    S        +F+V +Y P+GNV   GFF  NV+
Sbjct:   16 AHNEYRQKHGVPPLKLCKNLNREAQQYSEALASTRILKHSPESSRGQCGENLAWASYD--QTGKEVAD---RWYSEIKNYNFQQPGFTSGT-GHFTAMVWKNTKKMGVGKASASDGS---SFVVARYFPAGNVVNEGFFEENVL 150
The following BLAST results are available for this feature:
BLAST of TCONS_00013400 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
GAPR16.313e-1937.50Golgi-associated plant pathogenesis-related protei... [more]
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