TCONS_00013393 (transcript) - C. hemisphaerica

Overview
NameTCONS_00013393
Unique NameTCONS_00013393
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2715

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00013393 ID=TCONS_00013393|Name=TCONS_00013393|organism=Clytia hemisphaerica|type=transcript|length=2715bp
ATTACAGTTCAGTGTGCATAACAACGTTTCTTAAtttaagttttagtttt
aaaattaaaaatgagtAAAAGAGAAGATATTGCTGCATTACAGTTTGAGT
TGACAAAAATCAATGATGAACTTAACTCTATCAACGATCAAATGAAAAAT
CTATTAGTACGTCAAGAAGAATTGCGTcacagaaaaaagaaattatcaaa
GGAGTTACTTGATTCGGAGAAAACTCAGCAAAATGACATTCTCAAATTCC
AATGGGATTCTGACAATTTTGAATGGAGCGAATCTATGAAAACTACAATG
AAAGAGAAATTTAAGATAGAGAATTTTCGACCACTACAAAAACAGACAAT
GAATGTAACAATGTCAAATTATGACTGTATGTTGATTATGCCCACTGGTG
GAGGAAAAAGTCTGTGTTTTCAACTACCTGCTGTAGTATCCAATGGCTTC
ACTTTGgtCATCTCACCTCTCATTTCTTTGATGGAAGATCAATTGATGGC
TTTGGATAGACTTGGCATCAATGCAGCTCTTCTCTCCTCCTCCATCCCTA
CTAAAGATGTTACCATCATCCAGAACTTGCTGGTTGACAAAGAATGCCCA
TACAAACTGGTGTATGTCACTCCTGAGAGAATAGCAAAAAGCAAAAGGTT
CATGGCTAAATTGGAAAAAGCATATGCagTTGGTAACGTTAGTCGTATAG
TTATTGATGAGGTGCACTGTGCAAGTCATTGGGGCCATGATTTTCGACCT
GATTACAAAGTACTGGGTATATTAAAACGACAATTCCCGAAACTCCCCAT
CCTCGGGTTGACTGCCACCGCAACGAAGAAAGTTCTTGATGATGTTAAGG
AGATGTTGAATTTAGATCGCACTTGTATGGTCTTTCGTGCTTCCTTCAAT
CGACCTAATCTTTTCTATGAGGTACACCAAACTTGTTTGGATTCAAAGGA
TCTTATCAAGGAAGTTTCAAATGTCATCAAAAGAAGGTTCAAAGCAATGT
CAGGAATCATTTACTGTTTCTCACGCAAAGACAGTGAAGAAGTAGCACAT
GGACTGAAAGAGCGTGGTATAACAGCTCATTGTTATCATGCAGATCTGGA
CCCTAAACTAAAGTCGTACATCCATCAACAGTGGACCAATGGGGAAATAC
AGGTAGTTGTAGCCACCATTGCGTTCGGTATGGGCATCGATAAACCGAAC
GTTCGATTTGTCATTCATTTCTCCATCAGTAAATCAATTGAAAATTATTA
CCAAGAAAGTGGCCGCGCGGGCCGCGATGACCAGAAAGCTTGGTGTATAC
tatactttcgatttcaagacATCTTTCGACAGAGCTCTATGGTTTTCACT
GAGAAAATGGGACTTCATAACTTGTACTTGATGATCAACTACTGTCTGAA
CAAGACCACCTGTCGTCGCAAACAAATTGGtctttttttctctgaaaact
GGGAAGCGAATCAATGCAAAGAAACGTGtgatgtttgttttgaaaaagct
GAAACGAAAGACTTGATACTGAACAAGGATGCGCTCAATTTATTGGATAT
CTTAGAAAATGCGAAATACAAACAAGAAAGGCTAACTCCACTAAAGTTAG
TAGAACTTTGGCTTGGAAAAGGTAAAGTTTCACTACGCAAAAAGCAGGCG
AGCTACCCAAAAGAAATTTGCGAGTTGATCGTGGCGAAGTTGATAGCGGA
ACAGATCCTGACGGAAGATTTCCATTTCACACCGTACAATACCATCACTT
ACATTTTGCCGGGTCCGAGAAAACATTTGGTCACCACGTTGAAAAAGCGG
GGAGGAGATATTATCTTTCCGATACCGTGTAACAGTCAAATGGGAAAAGA
CGGATGCAAGAAAGAAGATGATGAATCAACCAATCAGAGCACTAGAAAGC
GTGTTTTAAGTGAAAGTGATGACGAAAACGTGAAAGTTAAAATGGAAGAG
GAATTTAAGGACTTAACATCACCAGTCACTTCTTCACTGAAGAAACAGAA
AACGAACGCCATTATTATCGATTCGGACGATAATGATGAGGatgattttg
ttttataaacTTATAAACTGTATTTATCCTTATAATGGAGTCAACGTAAG
CATTAGTCTATTCATGCGAAGGGATCTTGTACCAATAGGTTGGAACAgaa
tggttttgtttttttgtattcACAGATTATTTAAAGGTActattttttaa
tcttttgtacattttgtaAATAGAGATATTATATtgaggctcggaaaaca
cgagttaaaaaacacgagttaaaaaacacgagttacgttaaatgtgacgt
catcaatgggaaattatgacgtcacaagtagatcatttaactcgtcaatt
tatggtgcgccttaaactgacgagttaattaactcgtcaatttatggtgc
accataatcttacgagttaattaactcgtcaatttatggtgcaccttaaa
ctgacgagttaattaactcgtcaatttatggtgcaccataatcttacgag
ttaattaactcgtcaatttatggtgcaccataatcttacgagttaattaa
ctcgtcaatttatggtgcaccttaaactgacgagttaattaactcgtcaa
ttaatggtgcaccttaaatcatagaggtataaagaaaacaggagttgaat
gtgtcggtaattggtcgttaaagtcttttgatttcttttataaaatgtat
caaaagaaattctaa
Run BLAST on NCBI

transcript from alignment at sc0000167:341646..351226+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00013393 ID=TCONS_00013393|Name=TCONS_00013393|organism=Clytia hemisphaerica|type=transcript|length=9581bp|location=Sequence derived from alignment at sc0000167:341646..351226+ (Clytia hemisphaerica)
ATTACAGTTCAGTGTGCATAACAACGTTTCTTAAtttaagttttagtttt
aaaattaaaaatgagtAAAAGAGAAGATATTGCTGCATTACAGTTTGAGT
TGACAAAAATCAATGATGAACTTAACTCTATCAACGATCAAATGAAAAAT
CTATTAGTACGTCAAGAAGAATTGCGTcacagaaaaaagaaattatcaaa
GGAGTTACTTGATTCGGAGAAAACTCAGCAAAATGACATTCTCAAATTCC
AATGGGATTCTGACAATTTTGAATGGAGCGAATCTATGAAAACTACAATG
AAAGAGAAATTTAAGATAGAGAATTTTCGACCACTACAAAAACAGACAAT
GAATGTAACAATGTCAAATTATGACTGTATGTTGATTATGCCCACTGGTG
GAGGAAAAAGTCTGTGTTTTCAACTACCTGCTGTAGTATCCAATGGCTTC
ACTTTGGTAAGTTGAAAACATTCTTTTTCCAGTGTTGCAACCTTTCCAAC
TGTAGATGGAGATCTGTCCAGTTGAGATACAAATATATAATTTCTGTCTT
GCttttaaaagttcttttgaTTGTCCATAGTCATAAAACCTAGTTGCAAT
CTATCTTtccttctgtttttttttaaggaaataacCATTATTTTATGTTA
TGATGTATGATATTGTTTAACAGTGCctgatttttaaaaacagattacat
aaaaaaaaaaacacaaaaagaaagTATGCTCTATCTTTGATTTAGCTTTT
GTTTTCTTACTAGTAATTTTGGAAAGttaatcaaaaaatttagttaaTTT
TATGTAGAAATTCTTCCTTTATCCTTTAAAGATTCTTAACCCTTAATAAA
AAGCCTATATGCAGCTTTGCTCAAtctttctgaaatatttttttccaggt
CATCTCACCTCTCATTTCTTTGATGGAAGATCAATTGATGGCTTTGGATA
GACTTGGCATCAATGCAGCTCTTCTCTCCTCCTCCATCCCTACTAAAGAT
GTTACCATCATCCAGAACTTGCTGGTTGACAAAGAATGCCCATACAAACT
GGTGTATGTCACTCCTGAGAGAATAGCAAAAAGCAAAAGGTTCATGGCTA
AATTGGAAAAAGCATATGCaggtatgaaaagaaatttcagTGGTTTGCTA
ATACTTTTTTCAAGCTTCTTCCTCTATCAAATACATAGTTAATAGTATTT
GATAGTATAATAATAGTtttgtgaaacttttgaaaaaaaattgatttaaa
atgtgTGGTACTGTATGTGTGGTACACAATTCTCTTTAATTTGATGAAAC
TTTACTTCCCTTCTTTTGGTCTTTCTTCTGTGTTACCGGGTGACTCAGAA
ATAAGTTATATACCGGGTGGCCCAGAAAAAGTAATATACCGGGTTACCCA
GAATGCAGAAAAAAGTATAAGGGTTTGATGAATAACACTTTGTCCGATAT
AATGTGAACCTTAAATGGATTCTTTCGACATTGTANtctgttttttttta
aggaaataacCATTATTTTATGTTATGATGTATGATATTGTTTAACAGTG
CctgatttttaaaaacagattacataaaaaaaaaaacacaaaaagaaagT
ATGCTCTATCTTTGATTTAGCTTTTGTTTTCTTACTAGTAATTTTGGAAA
GttaatcaaaaaatttagttaaTTTTATGTAGAAATTCTTCCTTTATCCT
TTAAAGATTCTTAACCCTTAATAAAAAGCCTATATGCAGCTTTGCTCAAt
ctttctgaaatatttttttccaggtCATCTCACCTCTCATTTCTTTGATG
GAAGATCAATTGATGGCTTTGGATAGACTTGGCATCAATGCAGCTCTTCT
CTCCTCCTCCATCCCTACTAAAGATGTTACCATCATCCAGAACTTGCTGG
TTGACAAAGAATGCCCATACAAACTGGTGTATGTCACTCCTGAGAGAATA
GCAAAAAGCAAAAGGTTCATGGCTAAATTGGAAAAAGCATATGCaggtat
gaaaagaaatttcagTGGTTTGCTAATACTTTTTTCAAGCTTCTTCCTCT
ATCAAATACATAGTTAATAGTATTTGATAGTATAATAATAGTtttgtgaa
acttttgaaaaaaaattgatttaaaatgtgTGGTACTGTATGTGTGGTAC
ACAATTCTCTTTAATTTGATGAAACTTTACTTCCCTTCTTTTGGTCTTTC
TTCTGTGTTACCGGGTGACTCAGAAATAAGTTATATACCGGGTGGCCCAG
AAAAAGTAATATACCGGGTTACCCAGAATGCAGAAAAAAGTATAAGGGTT
TGATGAATAACACTTTGTCCGATATAATGTGAACCTTAAATGGATTCTTT
CGACattgtaaagaggaaaggcaaacttaaaatctgGTATATGACTTTTA
AAATTCGGTTCAGTGGTTCTAcgcttttgaagtcaaaatttacttttaaa
aagtccaaaaacacgtcaaaaaagGGTCATTAGggaggttaagcaagaag
ctatctattacgtacggaatctattacgtgagtttttagACTGGATCCAA
GGCGTTTTAGCCTGATTCCTAAAGCTTCACGGCATAGGAGGAGGTTAAGC
AAAAAAGGCGATCTATTacgtatgacgtaatgtttatttttccgtATCTC
ACATTCGGCCCCAActtctaaaattttcttctttttttcttttccagttt
tCTTGTTAGTGGCTTGGTCTATAAAATCCCCTTACTTTCAATTTTAATCT
ACTTAGTTTTTTCCCAAGACAAatgtttttcacaaaaattaaatccagaC
AATTATATAGTCAGAGTATTCTATTACTTTTACTATTATTATCATTTCAA
TGATAATATAATATCATGActtaacatttcaaaaaaatatatttcataac
TTAATTCCTAGTTTACATAGGTCCCAATCAAAAATCACtgctttatttat
aaacaaaaaaaataatctgtAAGAGCATAGTGTACAGCTATGTCTTCCTT
GGGGGGGGGACCAATTCCTTATTTAGCTGAATTTCTATGAATGCTTCACC
ATTACCAATAAAAACacccttataaaaaagtgttgTGTTTCATATCTGAC
AGGTGTTACTTCTTCTGCTTCTTTGCATTCCAAGGTACCGATATCACCTT
TTTAGGAAGGAAGATGTCTCTTAGAATCAAACCAAACTTTCTTGAACGCT
ATAAtgtagaaaaaaagttgaagaatgACCAGTTAGTTAAAATTTTTCAG
CGAAGGATTGAGAACTCAAAGCAGTAGCAATAGTCCAGAAGCTTTATATA
ACTTTGGGGAACGGTTTGAAGTCCAGCGGTTGTGTGTGACATCAAGTTTT
TAGCAGGCTGATTTGTATACGTACAATTTATAGTTGATGATGAAGAGCAG
AAATTGGATCTCGTTGCTTACCAGcatttgaaattggaaaaaaataaaca
tttcttcTGTTATGCTTTGGCAGGTGGAGGGGTAAAATTTTTTGAGCTTG
GCAGAGCAGTCTTTTTCTCGTGTTTGTTGCTTTGCTTTGACATATTATAA
CTTTGGCTTCTTCGCACTTGATGGTGGCACCAcagaaacactgaaaaaca
tgaaaaggaAATATGGTTACATGATGTTCATTGTAATGCTTACTCTGGAT
GTATTTGGACTTTCAGAGCATataaaaagcaagataaaaaagagaagaaa
aacaaaagaaccagaaagacacttctgtttgttttggtttgataaaaaag
ttagCAAAGATTATTTTGTTACACTTACATCTTGACCTTCTTTTGTGCAA
TAAATCTTTTCACTTTGTTTGTATGCATCATAGTTCCATAGATgagattc
aaaaaatttcttctgtttttagttttctcagctcaaacttgtcagaaata
aaaaaaaaattaccaaagtttcttttctgtttacattttttcggGTGATT
TTTGATCCTAAACGATTCAGCCCAATCTCCGTAAGGTAAATTTCCCGCGG
atcacgtaatagattccgtacgtaatagatagcttcttgcttaacctcgc
tattatcctttttctttccaatgaaaaagattcgattctttgaaaagtca
TGAAACTTAAGAGATTTACTTATAAAGAGGGCAACTTCTTTCTGACATAA
cctttttctcaacttcagttgagctagaatctgaaaatgtgtctgtctgt
ctgtctgtccgaaaactttggggcaggctggagacttcaaaaatgatcgg
atttggctgaaatttggcacacttgttccttgggtgaatatctgggggtg
ttNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNttt
catttttaagggcgtggtcacgagttttcgccaaaacgaggctaaaactt
tggggcaggctggagacgtcaaaaatggtcggatttggctgaaaattagc
acacttgttccttgggtgaatatctgggggtgttttttttattttttgaa
aattttcatttttaagggcgtggtcacgagttttcgccaaaacgaggttA
AAACTTTTAGGCAGGCTAGAGACTTCAAGGGCGAATCCCTGTGGGtggtt
ttcattattttaaaatttccattttaagggggtggtcatgagtttttagt
tgaaattggttacaattttacaattgagcctacgaatgatttaaaaacac
tgaagttgagcccagtgcggttagcacttTCGACAGTTTATTAAGTGACT
CCCTTTCTTATCTACCCTCTTTATTACTACATGTAGCTTTAAACATGCTT
CCTTTCAGTTGGTAACGTTAGTCGTATAGTTATTGATGAGGTGCACTGTG
CAAGTCATTGGGGCCATGATTTTCGACCTGATTACAAAGTACTGGGTATA
TTAAAACGACAATTCCCGAAACTCCCCATCCTCGGGTTGACTGCCACCGC
AACGAAGAAAGTTCTTGATGATGTTAAGGAGATGTTGAATTTAGATCGCA
CTTGTATGGTCTTTCGTGCTTCCTTCAATCGACCTAATCTTTTCTATGAG
GTGAGTTACtgaattgaaaatataaaccaCAAGGTTTTATACTGTTCAGA
TATCAGTTACTCAATTGGCAAAGACTTTTCTGCAGAATCTTAGTTTTGTC
GACCTCTttcttaggcaaattttctttttataagaaataacGCCGAAACG
TGTTGTCTTATTTTATCGCCCATGAGAAGTCAGCTAAAAGCAGGGTAATA
AAGTTTATTGTGTAAGCAGGAAGGCTGTGAGAGGTTCATCTGTAACCAGT
AATTTCCCCGTCTTATTGATCCAGGTACACCAAACTTGTTTGGATTCAAA
GGATCTTATCAAGGAAGTTTCAAATGTCATCAAAAGAAGGTTCAAAGCAA
TGTCAGGTATATTTGGCAGAATCACCATATTTATTGATTCGTAAATTGTA
TAGGAATCTTCAGTTTTCACTCTTAAGTCAATTCTCGGGACtaaaaaaat
aattgtaaaCTGATAAAGATCagattattattttcaattatttttaaaaa
aatgaaaattaaataaaggatATTTTTCTTCAGTTTGATATCTACATTCC
ATTGTGTCAAATTTTTGAACTGTTCTTTGGTATATAAAAGGGGTGAATTA
TTTAGCTTTACTTTACttgaattgaaaataattttcaacttTGATATACG
AGAAACATTTGCATGACTGATGTTTATGATACATACTATACGAAGTTTCC
TGTGCTCAGAATATCTTAGCTTGATGAATGTTTTTGGTCTTGCTTCAATT
CTTTATTGGATTAAATTGTTATTTGGTTATGGATTTTTCTAAACTTATTA
TGTTTCTCTTTGATCAGGAATCATTTACTGTTTCTCACGCAAAGACAGTG
AAGAAGTAGCACATGGACTGAAAGAGCGTGGTATAACAGCTCATTGTTAT
CATGCAGATCTGGACCCTAAACTAAAGTCGTACATCCATCAACAGTGGAC
CAATGGGGAAATACAGGTAAAGTGCTCGAATTCCATCATCCCCATGGTTT
TGTTGAATCTTATTTAAATATCAGAGATTGAGTTTCTCACTTTCACTCCT
TGAATTCTTTGCCTTTTTCTAAACTTCAGTAAAGTCTGTTTGAGGGCATA
TATCAAATCTTTTGGCAGCCTTCAAAAGTGGTTGATTTAGGCTAGAATTC
CGCACAATCgttcttttgggtatttttttcGAGCCTGAAAAGGTGTTTTC
ACTGCTACTACAATTGGTCCccgaaaaagttttaaaagataCTGCAGTTT
CGCCCAGTGCGGTGGGTACGCTTAAAAGTAAAGTTTTAGCGCTAATTTAA
TCTAAGCTGGTAGGTGTATGGAACTAATTGAATCTCTGCTTCTCCCATCA
CTGACAGCCTGGTATGTCACAAAAATAATGTTGGAATAATAGAAATAAAG
GTTCTCTAATGTACTTTAATTCCCTAGATTTAGGATTTAATTGTATTgat
attttcctctttttacagGTAGTTGTAGCCACCATTGCGTTCGGTATGGG
CATCGATAAACCGAACGTTCGATTTGTCATTCATTTCTCCATCAGTAAAT
CAATTGAAAATTATTACCAAGAAAGTGGCCGCGCGGGCCGCGATGACCAG
AAAGCTTGGTGTATACtatactttcgatttcaagacATCTTTCGACAGAG
CTCTATGGTTTTCACTGGTAAGCTTttatacccccccccccccccccttt
ttccgTATATTCTTTTCATGATGCAAAGCTGTGTGATATTTGGCTATATT
TTTGTGTTGCGAACAAATGGAGATTTGatcagaaaaatgcaaaacCAGTT
TATTTCGGGACGAACAAAGGAGAGTTTAGTTTTGAGAACCTCCAAATTTA
CATAGTTTCGTAGGATTTGAGATTCCTTACTGGTGATTCACGTTAAATGT
TTTGCCCCTCATCATTTTACAGAGAAAATGGGACTTCATAACTTGTACTT
GATGATCAACTACTGTCTGAACAAGACCACCTGTCGTCGCAAACAAATTG
GtctttttttctctgaaaactGGGAAGCGAATCAATGCAAAGAAACGTGt
gatgtttgttttgaaaaagctGGTAAGTCTCTTGAANGTGCAAAGAAACT
TGtgatgtttgttttgaaaaagctGGTAAGTCTCTTGAATCACCAACTCA
AGAATAAAATGTAGATTAATTGATCTTCTTCTTTTGCAACTCAGATCTTT
TATAAATGATaaacgcaattttcagattcaaaagGTCTAATCAATACAAT
ATGCACAGGAATTACATTTTATAGTACCTAGTAGATATTTGTGTACagtc
aaaatttgaataatttgtACTTTAATCTTTCTTCTCGTTTCAGAAACGAA
AGACTTGATACTGAACAAGGATGCGCTCAATTTATTGGATATCTTAGAAA
ATGCGAAATACAAACAAGAAAGGCTAACTCCACTAAAGGTAACACTTTAT
TAAATTACCAGCAACTGAATATCCCTTCAAATACGCTACTTGTATTCTAT
ACTTTACCTTGGAATATGGGCTATTCTAGAAATAGTCTGTAACCTCTATA
TTGAGGCGGTCTGACGTCCTAGATAAAAAAACAGGGGGTCCCACTTTTCG
GATGTGATAATCCAGGGTGGTCACTAAAATAAGGTCGAAAATCTAGGGTG
GTTGAAAAATGAGGACAAAAATCCTaggggtcctgaaaaattgaaaaaag
agtcCCGAAAAAGACCTCCCCAACATAGGTGGTACAAGTTTTTTTCTGGG
TTACCCAAATAGTCGtaagttttagaaaaaaattttgtggtCATTTCATT
GTTAATCATTGCATTATTTTCAGTTAGTAGAACTTTGGCTTGGAAAAGGT
AAAGTTTCACTACGCAAAAAGCAGGCGAGCTACCCAAAAGAAATTTGCGA
GTTGATCGTGGCGAAGTTGATAGCGGAACAGATCCTGACGGAAGATTTCC
ATTTCACACCGTACAATACCATCACTTACATTTTGCCGGGTCCGAGAAAA
CATTTGGTCACCACGTTGAAAAAGCGGGGAGGAGATATTATCTTTCCGAT
ACCGTGTAACAGTCAAATGGTGAGTATAAAAAGTACTTCGGTTCTCCCTT
TGTTGTTGGAAATTATCAgggttattattattttttttaattatcaatTT
TCGCTTAATAGCAGATTCGAATTTGAAGCACAGTAAAAAATCAGCCAAAT
TTAGGaaataacttttaagagtgaaattatcgaatttttcaaattttgtt
aacTCACTTTCTTTACTCACTTACAACGCATTTTTGGAAGGCTGAAAAAC
TTATCCTTGAGGGCGCGGTCCGTACGGCTGGTTTTCTTCGGGCATGGGAT
GGAATAAAATCACCGTTGTTACTTTAGTTTTCATGTTAacactggcggat
ttaagacaatagagcaattACGTCAGAAACATGTGAaggaaattacaatt
acaaatctattCATCTAATATGTTCGTCTGGGTCTAtggttttaagtttt
tctttattGCGCTACGTACAACGACAAAATACCGTAAATTTGTTTTAATA
TCTCACAGGGAAAAGACGGATGCAAGAAAGAAGATGATGAATCAACCAAT
CAGAGCACTAGAAAGCGTGTTTTAAGTGAAAGTGATGACGAAAACGTGAA
AGTTAAAATGGAAGAGGAATTTAAGGACTTAACATCACCAGTCACTTCTT
CACTGAAGAAACAGAAAACGAACGCCATTATTATCGATTCGGACGATAAT
GATGAGGatgattttgttttataaacTTATAAACTGTATTTATCCTTATA
ATGGAGTCAACGTAAGCATTAGTCTATTCATGCGAAGGGATCTTGTACCA
ATAGGTTGGAACAgaatggttttgtttttttgtattcACAGATTATTTAA
AGGTActattttttaatcttttgtacattttgtaAATAGAGATATTATAT
tgaggctcggaaaacacgagttaaaaaacacgagttaaaaaacacgagtt
acgttaaatgtgacgtcatcaatgggaaattatgacgtcacaagtagatc
atttaactcgtcaatttatggtgcgccttaaactgacgagttaattaact
cgtcaatttatggtgcaccataatcttacgagttaattaactcgtcaatt
tatggtgcaccttaaactgacgagttaattaactcgtcaatttatggtgc
accataatcttacgagttaattaactcgtcaatttatggtgcaccataat
cttacgagttaattaactcgtcaatttatggtgcaccttaaactgacgag
ttaattaactcgtcaattaatggtgcaccttaaatcatagaggtataaag
aaaacaggagttgaatgtgtcggtaattggtcgttaaagtcttttgattt
cttttataaaatgtatcaaaagaaattctaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007483XLOC_007483Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00013393-exon-sc0000167-1491911889:341646..342101TCONS_00013393-exon-sc0000167-1491911889:341646..342101Clytia hemisphaericaexon
TCONS_00013393-exon-sc0000167-1510915933:341646..342101TCONS_00013393-exon-sc0000167-1510915933:341646..342101Clytia hemisphaericaexon
TCONS_00013393-exon-sc0000167-1575043694:341646..342101TCONS_00013393-exon-sc0000167-1575043694:341646..342101Clytia hemisphaericaexon
TCONS_00013393-exon-sc0000167-1491911889:343419..343641TCONS_00013393-exon-sc0000167-1491911889:343419..343641Clytia hemisphaericaexon
TCONS_00013393-exon-sc0000167-1510915933:343419..343641TCONS_00013393-exon-sc0000167-1510915933:343419..343641Clytia hemisphaericaexon
TCONS_00013393-exon-sc0000167-1575043694:343419..343641TCONS_00013393-exon-sc0000167-1575043694:343419..343641Clytia hemisphaericaexon
TCONS_00013393-exon-sc0000167-1491911889:346554..346795TCONS_00013393-exon-sc0000167-1491911889:346554..346795Clytia hemisphaericaexon
TCONS_00013393-exon-sc0000167-1510915933:346554..346795TCONS_00013393-exon-sc0000167-1510915933:346554..346795Clytia hemisphaericaexon
TCONS_00013393-exon-sc0000167-1575043694:346554..346795TCONS_00013393-exon-sc0000167-1575043694:346554..346795Clytia hemisphaericaexon
TCONS_00013393-exon-sc0000167-1491911889:347070..347151TCONS_00013393-exon-sc0000167-1491911889:347070..347151Clytia hemisphaericaexon
TCONS_00013393-exon-sc0000167-1510915933:347070..347151TCONS_00013393-exon-sc0000167-1510915933:347070..347151Clytia hemisphaericaexon
TCONS_00013393-exon-sc0000167-1575043694:347070..347151TCONS_00013393-exon-sc0000167-1575043694:347070..347151Clytia hemisphaericaexon
TCONS_00013393-exon-sc0000167-1491911889:347613..347761TCONS_00013393-exon-sc0000167-1491911889:347613..347761Clytia hemisphaericaexon
TCONS_00013393-exon-sc0000167-1510915933:347613..347761TCONS_00013393-exon-sc0000167-1510915933:347613..347761Clytia hemisphaericaexon
TCONS_00013393-exon-sc0000167-1575043694:347613..347761TCONS_00013393-exon-sc0000167-1575043694:347613..347761Clytia hemisphaericaexon
TCONS_00013393-exon-sc0000167-1491911889:348264..348462TCONS_00013393-exon-sc0000167-1491911889:348264..348462Clytia hemisphaericaexon
TCONS_00013393-exon-sc0000167-1510915933:348264..348462TCONS_00013393-exon-sc0000167-1510915933:348264..348462Clytia hemisphaericaexon
TCONS_00013393-exon-sc0000167-1575043694:348264..348462TCONS_00013393-exon-sc0000167-1575043694:348264..348462Clytia hemisphaericaexon
TCONS_00013393-exon-sc0000167-1491911889:348718..348867TCONS_00013393-exon-sc0000167-1491911889:348718..348867Clytia hemisphaericaexon
TCONS_00013393-exon-sc0000167-1510915933:348718..348867TCONS_00013393-exon-sc0000167-1510915933:348718..348867Clytia hemisphaericaexon
TCONS_00013393-exon-sc0000167-1575043694:348718..348867TCONS_00013393-exon-sc0000167-1575043694:348718..348867Clytia hemisphaericaexon
TCONS_00013393-exon-sc0000167-1491911889:349139..349233TCONS_00013393-exon-sc0000167-1491911889:349139..349233Clytia hemisphaericaexon
TCONS_00013393-exon-sc0000167-1510915933:349139..349233TCONS_00013393-exon-sc0000167-1510915933:349139..349233Clytia hemisphaericaexon
TCONS_00013393-exon-sc0000167-1575043694:349139..349233TCONS_00013393-exon-sc0000167-1575043694:349139..349233Clytia hemisphaericaexon
TCONS_00013393-exon-sc0000167-1491911889:349619..349864TCONS_00013393-exon-sc0000167-1491911889:349619..349864Clytia hemisphaericaexon
TCONS_00013393-exon-sc0000167-1510915933:349619..349864TCONS_00013393-exon-sc0000167-1510915933:349619..349864Clytia hemisphaericaexon
TCONS_00013393-exon-sc0000167-1575043694:349619..349864TCONS_00013393-exon-sc0000167-1575043694:349619..349864Clytia hemisphaericaexon
TCONS_00013393-exon-sc0000167-1491911889:350354..351226TCONS_00013393-exon-sc0000167-1491911889:350354..351226Clytia hemisphaericaexon
TCONS_00013393-exon-sc0000167-1510915933:350354..351226TCONS_00013393-exon-sc0000167-1510915933:350354..351226Clytia hemisphaericaexon
TCONS_00013393-exon-sc0000167-1575043694:350354..351226TCONS_00013393-exon-sc0000167-1575043694:350354..351226Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000167supercontigsc0000167:341646..351226 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.4025	2.87502	1.07736	0.806977	6.90967	6.31716	7.91379	7.7172	5.22933	6.05763	4.1791	3.59635	3.20604	3.71044	3.07042	3.51108	3.40678	3.22483	2.35447	2.8586	3.54657	3.48409	4.8074	4.57242	4.29201	5.02477	1.22146	0.941692	3.37361	3.51605
Blast
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BLAST of TCONS_00013393 vs. Swiss-Prot (Human)
Match: RECQ1 (ATP-dependent DNA helicase Q1 OS=Homo sapiens GN=RECQL PE=1 SV=3)

HSP 1 Score: 581.252 bits (1497), Expect = 0.000e+0
Identity = 289/577 (50.09%), Postives = 398/577 (68.98%), Query Frame = 1 
Query:   79 IAALQFELTKINDELNSINDQMKNLLVRQEELRHRXXXXXXXXXX------XXXTQQNDILKFQWDSDNFEWSESMKTTMKEKFKIENFRPLQKQTMNVTMSNYDCMLIMPTGGGKSLCFQLPAVVSNGFTLVISPLISLMEDQLMALDRLGINAALLSSSIPTKDVTIIQNLLVDKECPYKLVYVTPERIAKSKRFMAKLEKAYAVGNVSRIVIDEVHCASHWGHDFRPDYKVLGILKRQFPKLPILGLTATATKKVLDDVKEMLNLDRTCMVFRASFNRPNLFYEVHQTCLDSKDLIKEVSNVIKRRFKAMSGIIYCFSRKDSEEVAHGLKERGITAHCYHADLDPKLKSYIHQQWTNGEIQVVVATIAFGMGIDKPNVRFVIHFSISKSIENYYQESGRAGRDDQKAWCILYFRFQDIFRQSSMVFTEKMGLHNLYLMINYCLNKTTCRRKQIGLFFSENWEANQCKETCDVCFEKAETKDLILNKDALNLLDILENAKYKQERLTPLKLVELWLGKGKVSLRKKQA---SYPKEICELIVAKLIAEQILTEDFHFTPYNTITYILPGPRKHLV 1782
            ++AL  EL  I  EL+++  Q++ L  RQ+EL  +KK L+K++        +  + + D     W+ ++F WS  +K  ++  FK+E FRPLQ +T+NVTM+  +  L+MPTGGGKSLC+QLPA+ S+GFTLVI PLISLMEDQLM L +LGI+A +L++S   + V  +   +V+K    KL+YVTPE+IAKSK FM++LEKAY     +RI +DEVHC S WGHDFRPDYK LGILKRQFP   ++GLTATAT  VL D +++L +++ C  F ASFNRPNL+YEV Q   +++D I+++  +I  R+K  SGIIYCFS+KDSE+V   L+  GI A  YHA+L+P+ K+ +H++W+  EIQVVVAT+AFGMGIDKP+VRFVIH S+SKS+ENYYQESGRAGRDD KA CILY+ F DIFR SSMV  E +G   LY M++YC N + CRR  +   F E W +  C + CD C + +  +   + +   +L+ IL+ A+   E+LTPLKL++ W+GKG   LR       + P+E  E I+A  + +Q L ED+ FT Y TI+Y+  GP+ +L+
Sbjct:    4 VSALTEELDSITSELHAVEIQIQELTERQQELIQKKKVLTKKIKQCLEDSDAGASNEYDSSPAAWNKEDFPWSGKVKDILQNVFKLEKFRPLQLETINVTMAGKEVFLVMPTGGGKSLCYQLPALCSDGFTLVICPLISLMEDQLMVLKQLGISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMSRLEKAYEARRFTRIAVDEVHCCSQWGHDFRPDYKALGILKRQFPNASLIGLTATATNHVLTDAQKILCIEK-CFTFTASFNRPNLYYEVRQKPSNTEDFIEDIVKLINGRYKGQSGIIYCFSQKDSEQVTVSLQNLGIHAGAYHANLEPEDKTTVHRKWSANEIQVVVATVAFGMGIDKPDVRFVIHHSMSKSMENYYQESGRAGRDDMKADCILYYGFGDIFRISSMVVMENVGQQKLYEMVSYCQNISKCRRVLMAQHFDEVWNSEACNKMCDNCCKDSAFERKNITEYCRDLIKILKQAEELNEKLTPLKLIDSWMGKGAAKLRVAGVVAPTLPREDLEKIIAHFLIQQYLKEDYSFTAYATISYLKIGPKANLL 579
The following BLAST results are available for this feature:
BLAST of TCONS_00013393 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RECQ10.000e+050.09ATP-dependent DNA helicase Q1 OS=Homo sapiens GN=R... [more]
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