TCONS_00013391 (transcript) - C. hemisphaerica

Overview
NameTCONS_00013391
Unique NameTCONS_00013391
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1926

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00013391 ID=TCONS_00013391|Name=TCONS_00013391|organism=Clytia hemisphaerica|type=transcript|length=1926bp
CCTTATTTTAGTTTATCTTTCAAATATTGTGAAATCTGAAGATGTATCTA
AATCACTCATCCTTACATCTGTGCAAAACAAGGAACAATCTGGGAAGACA
CCATCGATAACTTCTTCAACCAAGTTCGACCATGTGATCGATCAAGCATT
ACTTGAAAGTGAATTAAACAAAGTTGATGAAGAATTTAACCGTATACAAA
AATTGATCACAATTTGGGAAAAGAACTTAAGAGTCTTATACAGCAAAGAA
GAACTCCAGGACATCCTAAAGCAAGACCTCACTACGATACAAACAGAAAC
CAGCACATTGGAGCATGATCTTATTATTCTATCagaaaaatcaatatcat
tAAAAGACTTGATACCCAAAAATGCCAACAAAGCTATCAAGAAAAAGATT
AAGCAACTCAAGAAGACCATTCAGAAAGAACTTCAGAAAGGCTTGATTTC
ACTCAGGAGTGTGTGGACAGCTACAAGGAGATTTTAAACAAATTTGACGA
CTATACTAAAGACCATGTCAGCCCATTAAAAACCCAACTTCATGatctca
aaaaatcaaaatgtagtCAATCAAAAACAATTCGTAAAACTTTGGAAAGT
CGTTTGAAATCTTTGGAAAAGAAAGTACAACATTGGATTGAGACCATTTT
ATCAAAACTCAAGGAATTGATTGAACAAAAGCTGACACAGCTTAGTGATG
GTTCTAAATacaattttgatgttttgaatgGACTGAGACTTGATTCGAAA
GATAAGAAAAAGGATCCTGATGCCCTTCAAGAAATTAAAACCAAAATGGT
CAATCTAAAGCAAACATCAGTACAAAATTATAACGAGTTCAACCAAGTCT
ATCAATACTTGTTCGAATTTAAGCATCTATTGGCAGACAATGAAAAAcag
ttcaaaaaatatttcgaaatagTTACCAAACTTCGTTACGTGATCATTGG
CTTCCAAGCACAGATCGATGAATATTTAACAGTTCTCTTGAGGAAAATTA
AAATGGCATCATTTGAGATTGATTCTGAAGAATTCGATAAAAAGTTGGAG
GACTTCTTGTTGATGTTTGAAGAAGAGTTAAGAAAGCTTTTACAAGTTGG
ATTATCGGAAACTTGTTCCAAACTGAACGAATTCGAAACGACATTTGACG
TGACTTTCAGAGAACAACTGGAACTTCTTAATAGCAATTATGAAACACTA
CAAAATAATGAACTATCGTCAGAAGACCTTGACCAGGCTTATTTTGACAC
GAAATTATCGATTTTGAGCAAAAAGTTCGAAAAATTAACTCGAAATAATC
AATATCATGCTGATTTTGTCGAGATTTTCAAACATAAATTTTGTTGACTG
GATGATTGGTACATACATGGataatttttaataaaagtcTATTCCGTACT
TTTTCTAACATTGCTATTGAGGGGTAAAGGATGCAGCTAAAAGTAATACT
TCGTtggaaaagataattttgagtagTTTGATGTAAGGATGCAAGCTTTG
TTTGTAGGTTGCTGAActtgaataatttgaaaatgaagaagaaaaaattg
ggATTTTTTAACTCGGTCAACAACTTTTAAATatatacttttttcaaaaa
ctttggatccCATTGATGATTCTAAATATGTATTCTTCAGATTTTTTCAC
TTCACAACATTTTTCGTTACCGATACCGCTCGTTTCATGGATCATTGATG
CCATCATTGGctggatttttagaaaatttgatatACGTTATGaaaatcat
agtcattataaaaaatcccggtctggaaggctttaGTTTCTTGCTATTAC
TAACAGTTAAAGCTTGCATATCTtaaattgatttgttttgcatacctttt
gatcatgtgattataAAATTAACCAATCTCAAGAGCTGAaatggtaacgt
gatcaaaaagtatgcaaatcgcaaca
Run BLAST on NCBI

transcript from alignment at sc0000167:318683..324530+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00013391 ID=TCONS_00013391|Name=TCONS_00013391|organism=Clytia hemisphaerica|type=transcript|length=5848bp|location=Sequence derived from alignment at sc0000167:318683..324530+ (Clytia hemisphaerica)
CCTTATTTTAGTTTATCTTTCAAATATTGTGAAATCTGAAGATGTATCTA
AATCACGTAAGTTGTTAGGTATTTATTCAAGTCACAATTTTAATCTTGGT
CTTCGTTGAAGTCTTTATTCCATGTGCTCTAATCAGATCGATTTGTCGCG
TTATATATTTACATGGAATTTGTCATATGTGCATCTAAAATTTAGAAGTG
GTTTTCttccaattttaagaaaattggtGTATTTATTCAAGTCACAATTT
TAATCTTGGTCTTCGTTGAAGTCTTTATTCCATGTGCTCTAATCAGATCG
ATTTGTCGCGTTATATATTTACATGGAATTTGTCATATGTGCATCTAAAA
TTTAGAAGTGGTTTTCttccaattttaagaaaattggtGTATTTATTCAA
GTCACAATTTTAATCTTGGTCTTCGTTGAAGTCTTTATTCCATGTGCTCT
AATCAGATCGATTTGTCGCGTTATATATTTACATGGAATTTGTCATATGT
GCATCTAAAATTTAGAAGTGGTTTTCTTCCAATGAAGCTTGGTACTcacg
tattaaaaaaaaagtggtgTTTAACACTTTTTGCGTGCGTTTAACACTAG
ACTCGTGCGACTTTGGGAAAAACATCCAAATGTACAAGAGTAATTATGTG
AACTTAGTCCAGTACCATCTCTAGGTGTGGACACTATCAttcattttcat
tgatttcattTCAGTCATCCTTACATCTGTGCAAAACAAGGAACAATCTG
GGAAGACACCATCGATAACTTCTTCAACCAAGTTCGACCATGTGATCGAT
CAAGGTAAACTTATGCAACCCTAATAAATACATCCTCGCGACTTTTGTTT
AACAAATTGCTTActttcgggtacctaataagtgGGGGGGGAGTGGAAAa
gttctcaaaacttaataagcgggaggAGGGGGCTGGAAAAGAAATGTCCT
tggtggaaatttttttgaaaaggagcAGAATTAGAGCAAAAGAGAGACCT
TTtattttaaagacatttttctaaaaattgataAACGGGGAGAGGTTGAA
ATAAGAATATCCTGGGTTGtaaaattttcgagaaattaaTAAGCTAGGGG
GACGCTCaataggtacccgagagtagactGTTCGAACATGCACGGGaaca
aatttgttcaaattaagGAAAATTTCGAATAATGGAGATTTGTTCATAAA
GCATTGTTATTAATGGAACAGAAAACATGTTTGAGTTGAGGAggcattcg
agttaaagagaatcTAGTTTTGAAGCGCCGAGACAAAAAACGGGCGTGAG
TTGAACAAGATGGGAGGCTGATATATAGGCCTCGAAAAAACTTAGTAAAC
ACTGTTACCCCTTTTCACGGATCTtgtaatgtttcaaaatttctactCTC
TATCACTGTTCCAATatcatttgctttttattttcataGCATTACTTGAA
AGTGAATTAAACAAAGTTGATGAAGAATTTAACCGTATACAAAAATTGAT
CACAATTTGGGAAAAGAACTTAAGAGGTATGTTATATTTCTAAGTTCTAG
TCCATCATTTAAATCATATCAGTATTACCTTATTAGTAGGGGGCTAGAAA
TACAGCCGCTTCAAGTTCAAAAGCATACTGACCTCAGTACtatcaagaca
agatttgacgtcaaatcacagtagagctgacagttagttggtcttaaagc
gACTGTAttcctttgtgtgttttagtcagagagttgttgtaatacaattt
tttgctcagaatttcattctctatcagatggtaccaatcattttcgttta
ttttgacttttgaaaataagctattcctctaccccttattttcccttgca
gttttgccaatggcgtcactattttggtcataaaaagttttcccgggcct
aatccgcgtcctccctctcaaaaatatcttgtaatatactgttcttttga
atagactaaaaatggctaggtcgtagaaaagatgtcacagaaccccaggc
ttggccccctactatatcggagtttttgatttttctaaaaaaagcgatgc
attgtgggattgtttcgagtgtattacaatagaattccctcgaggaattc
ctaagagatttctattgtaatacactcgaaacaatcccacaatgcatcgc
ttttttagaaaaatcaaaaactccgataaggtctattatacaagaagttg
atttctttctttcttcttctgtTTGTTTCGGTACaatatattgagacaga
ctttatttGTATTCATTCTGGTTAGCTTcgtgtaagtaagtaagtctgcg
accgcagtcggtgGCGagccgaaggctcctctttcgatagctatctaccc
gaaggtaggggaagacgtcactctttctccctggattgctccacttaccc
ttgactcTTCTCTTAATaatgctgagcatcaagcagagaggcatgaaata
ccattttggaaatctttggtataacccggctgggggttgaacccacaacc
ttgcaaaCTGTAGCTGGATATCGTactacttcgaataaacgccccatTTT
TTTAAACCTCCccttgaataaacgcccctttttGAGAAAAGACTTTGGAT
GAGTGCCCCCTCCCGCTCGATTAAAAGCCCTTcctcaaaaccaaaacaaa
aattgataaatgtcCGGGATGTTTATTTGATGTTTGACTGGAAAAGTTCA
TGACAAATACACAATATAAGAAAGATTTACCTTTCGATATCCATTTTAGT
CTTATACAGCAAAGAAGAACTCCAGGACATCCTAAAGCAAGACCTCACTA
CGATACAAACAGAAACCAGCACATTGGAGCATGATCTTATTATTCTATCa
gaaaaatcaatatcattAAAAGACTTGATACCCAAAAATGCCAACAAAGC
TATCAAGAAAAAGATTAAGCAACTCAAGAAGACCATTCAGAAAGAACTTC
AGAAAGGCTTGGTAAGACTGATTAACGATTTTGAATGCAAGTTGAAAGAG
AGATGTTCTCAAGATAGTCTTAAAGAAGCAGAATCGTCGTTTTTCAGTAA
AGTTAACGATATTGGAGAAGTCCATGAGCAATGTGATGGTACGTAAGCGT
CTTGTTTTAGCCTCTTTTGTTTCTACGTTCGAGAGGATTAAAAAGTTTTG
TCAAAGTgcaattttatcaaaagaaactgaccaaaatttcaaggggTTAA
CAAATTATTCCTTAGTAAGATTTTGCAGAATAATTACTGTGACAGGGATC
TATGGATCACATTGCATGAGCTTGAAATTTGTACGAATCTATTTCCACCA
AGCCAGGTTGGGTGTTCCTATTTTAGTTTCTTCTTTATCTTAACCTTTAT
AGATTTCACTCAGGAGTGTGTGGACAGCTACAAGGAGATTTTAAACAAAT
TTGACGACTATACTAAAGACCATGTCAGCCCATTAAAAACCCAACTTCAT
GatctcaaaaaatcaaaatgtagtCAATCAAAAACAATTCGTAAAACTTT
GGAAAGTCGTTTGAAATCTTTGGAAAAGAAAGTACAACATTGGATTGAGA
CCATTTTATCAAAACTCAAGGAATTGATTGAACAAAAGCTGACACAGCTT
AGTGATGGTTCTAAATacaattttgatgttttgaatgGACTGAGACTTGA
TTCGAAAGgtatttgatcatttttaacTTAACTGAGAGCCAATTTATTAA
TACAAATCTTCATTCTTCATTTATGGGTCAAAATAATGTCTAAACCCTAA
AATGACACATTTCAGGATAGCATTCAGGACtgataatcaaataaatttat
atatCCTTTCTCAATACTCCAATCATATATTTCAAACCTTTTCTTGTTAA
CCAAAATGAAAGGAAATCTCATTTGTTGAAGTTGAATCCAGGTCACTCCT
ATATCATTGGGATGAAATAGTAGTTCTAGGATACACCTGTATTGATCGCA
ATGTGATGGTCACGGTTCGGCTGTTGTCCTGATGCAGATGAATATAAAGT
GTATTATATTTCTTCCGTTTAGATAAGAAAAAGGATCCTGATGCCCTTCA
AGAAATTAAAACCAAAATGGTCAATCTAAAGCAAACATCAGTACAAAATT
ATAACGAGTTCAACCAAGTCTATCAATACTTGTTCGAATTTAAGCATCTA
TTGGCAGACAATGAAAAAcagttcaaaaaatatttcgaaatagTTACCAA
ACTTCGTTACGTGATCATTGGCTTCCAAGCACAGATCGATGAATATTTAA
CAGTTCTCTTGAGGAAAATTAAAATGGCATCATTTGAGATTGATTCTGAA
GAATTCGATAAAAAGTTGGAGGACTTCTTGTTGATGTTTGAAGAAGAGTT
AAGAAAGCTTTTACAAGGTAATTTCATGTTCATCCATCAATCATATAATC
CCAAAAATCTTAATTTGATACTTTAGAACCTTTATAGTAACACTGACTGT
TACTGACCAGTAGTGTGGTAGCAGGGGGGAGCAACTCccaaaaaaattgc
ttttttacaTCCTAAAATTAgcagttttcagccaaaaagatgaaaaaaat
tatttcgctCGCGTGATTGTCacacaaatattttaatttttacttttaat
atGGGGCGCCAAAACAACAACTTTGGAAAATTGCTTCCCTAGTTTGCCTA
CTCTGAATCGCAGACCGAAGGTAGTATAGTttatgctctctaattcgacg
ttctactattcgataggctcccttgttcgatgaaatttaaagtcctcgtc
aacaagaaactctcataaacgacgctcccttatacGATAGGCTCCCttgt
tcgatgaaatttaaagtcctcgtcaacaagaaactctcataaacgacgct
cccttatacGATAAGCTCCCTTGTTCcatgaaaatccgattccccttCAG
GACAAATTCGTCAGTGGATACAATCAGTCTTATAGTTTGCCCCAATTTTG
GTTGATCCACCACGCTACTGTAAGCTCTTTTTCACCAAGCGCTCATTTTT
TACTTTCTCCATTTTTAGTTGGATTATCGGAAACTTGTTCCAAACTGAAC
GAATTCGAAACGACATTTGACGTGACTTTCAGAGAACAACTGGAACTTCT
TAATAGCAATTATGAAACACTACAAAATAATGAACTATCGTCAGAAGACC
TTGACCAGGCTTATTTTGACACGAAATTATCGATTTTGAGCAAAAAGTTC
GAAAAATTAACTCGAAATAATCAATATCATGCTGATTTTGTCGAGATTTT
CAAACATAAATTTTGTTGACTGGATGATTGGTACATACATGGataatttt
taataaaagtcTATTCCGTACTTTTTCTAACATTGCTATTGAGGGGTAAA
GGATGCAGCTAAAAGTAATACTTCGTtggaaaagataattttgagtagTT
TGATGTAAGGATGCAAGCTTTGTTTGTAGGTTGCTGAActtgaataattt
gaaaatgaagaagaaaaaattgggATTTTTTAACTCGGTCAACAACTTTT
AAATatatacttttttcaaaaactttggatccCATTGATGATTCTAAATA
TGTATTCTTCAGATTTTTTCACTTCACAACATTTTTCGTTACCGATACCG
CTCGTTTCATGGATCATTGATGCCATCATTGGctggatttttagaaaatt
tgatatACGTTATGaaaatcatagtcattataaaaaatcccggtctggaa
ggctttaGTTTCTTGCTATTACTAACAGTTAAAGCTTGCATATCTtaaat
tgatttgttttgcataccttttgatcatgtgattataAAATTAACCAATC
TCAAGAGCTGAaatggtaacgtgatcaaaaagtatgcaaatcgcaaca
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007482XLOC_007482Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00013391-exon-sc0000167-1491911889:318683..318738TCONS_00013391-exon-sc0000167-1491911889:318683..318738Clytia hemisphaericaexon
TCONS_00013391-exon-sc0000167-1510915933:318683..318738TCONS_00013391-exon-sc0000167-1510915933:318683..318738Clytia hemisphaericaexon
TCONS_00013391-exon-sc0000167-1575043694:318683..318738TCONS_00013391-exon-sc0000167-1575043694:318683..318738Clytia hemisphaericaexon
TCONS_00013391-exon-sc0000167-1491911889:319397..319486TCONS_00013391-exon-sc0000167-1491911889:319397..319486Clytia hemisphaericaexon
TCONS_00013391-exon-sc0000167-1510915933:319397..319486TCONS_00013391-exon-sc0000167-1510915933:319397..319486Clytia hemisphaericaexon
TCONS_00013391-exon-sc0000167-1575043694:319397..319486TCONS_00013391-exon-sc0000167-1575043694:319397..319486Clytia hemisphaericaexon
TCONS_00013391-exon-sc0000167-1491911889:320122..320208TCONS_00013391-exon-sc0000167-1491911889:320122..320208Clytia hemisphaericaexon
TCONS_00013391-exon-sc0000167-1510915933:320122..320208TCONS_00013391-exon-sc0000167-1510915933:320122..320208Clytia hemisphaericaexon
TCONS_00013391-exon-sc0000167-1575043694:320122..320208TCONS_00013391-exon-sc0000167-1575043694:320122..320208Clytia hemisphaericaexon
TCONS_00013391-exon-sc0000167-1491911889:321432..321643TCONS_00013391-exon-sc0000167-1491911889:321432..321643Clytia hemisphaericaexon
TCONS_00013391-exon-sc0000167-1510915933:321432..321643TCONS_00013391-exon-sc0000167-1510915933:321432..321643Clytia hemisphaericaexon
TCONS_00013391-exon-sc0000167-1575043694:321432..321643TCONS_00013391-exon-sc0000167-1575043694:321432..321643Clytia hemisphaericaexon
TCONS_00013391-exon-sc0000167-1491911889:322035..322340TCONS_00013391-exon-sc0000167-1491911889:322035..322340Clytia hemisphaericaexon
TCONS_00013391-exon-sc0000167-1510915933:322035..322340TCONS_00013391-exon-sc0000167-1510915933:322035..322340Clytia hemisphaericaexon
TCONS_00013391-exon-sc0000167-1575043694:322035..322340TCONS_00013391-exon-sc0000167-1575043694:322035..322340Clytia hemisphaericaexon
TCONS_00013391-exon-sc0000167-1491911889:322705..323049TCONS_00013391-exon-sc0000167-1491911889:322705..323049Clytia hemisphaericaexon
TCONS_00013391-exon-sc0000167-1510915933:322705..323049TCONS_00013391-exon-sc0000167-1510915933:322705..323049Clytia hemisphaericaexon
TCONS_00013391-exon-sc0000167-1575043694:322705..323049TCONS_00013391-exon-sc0000167-1575043694:322705..323049Clytia hemisphaericaexon
TCONS_00013391-exon-sc0000167-1491911889:323701..324530TCONS_00013391-exon-sc0000167-1491911889:323701..324530Clytia hemisphaericaexon
TCONS_00013391-exon-sc0000167-1510915933:323701..324530TCONS_00013391-exon-sc0000167-1510915933:323701..324530Clytia hemisphaericaexon
TCONS_00013391-exon-sc0000167-1575043694:323701..324530TCONS_00013391-exon-sc0000167-1575043694:323701..324530Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000167supercontigsc0000167:318683..324530 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.287334	0.308682	0	0.137332	0.9474	0	0.704255	0.812251	0.333234	0	0	1.24261e-05	0	0	0	0	0	0	0	0	0	0	0	0.102878	0	0.0779917	0	0	1.72738	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00013391 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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