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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00013378 ID=TCONS_00013378|Name=TCONS_00013378|organism=Clytia hemisphaerica|type=transcript|length=1961bpRun BLAST on NCBI protein sequence of TCONS_00013378-protein >TCONS_00013378-protein ID=TCONS_00013378-protein|Name=TCONS_00013378-protein|organism=Clytia hemisphaerica|type=polypeptide|length=509bp KTNMAVAIRSKNIILIADFFVILLISSINISLVFGNSSLYDDTDPMVQLNRun BLAST on NCBI transcript from alignment at sc0000167:211822..235066+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00013378 ID=TCONS_00013378|Name=TCONS_00013378|organism=Clytia hemisphaerica|type=transcript|length=23245bp|location=Sequence derived from alignment at sc0000167:211822..235066+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000167:211822..235066+ >TCONS_00013378 ID=TCONS_00013378|Name=TCONS_00013378|organism=Clytia hemisphaerica|type=CDS|length=18360bp|location=Sequence derived from alignment at sc0000167:211822..235066+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00013378 vs. Swiss-Prot (Human)
Match: QSOX1 (Sulfhydryl oxidase 1 OS=Homo sapiens GN=QSOX1 PE=1 SV=3) HSP 1 Score: 212.616 bits (540), Expect = 8.775e-59 Identity = 141/484 (29.13%), Postives = 229/484 (47.31%), Query Frame = 3
Query: 111 SSLYDDTDPMVQLNNETIYKQLEGSKKHWIVEFYSSWCGHCQQFAPTWKKLAWQVKNWQNYVNVGAVNCADQSNFDTCVSFGIGAYPTIKIYKPNWIRPPNKEEEDDTGKIRDFRQKEKRKIKDADESLGIVYKGDKKIDSIKRSLIDVMETQQSKFTFASYD-EIMKLTSPAIDTYL------YLFVVFESKDSYIGKNLILDTSSSQKAIVRRVDFTNEILTKKYDIFKNPS--LVSVNLNNKRAEVLKPDGEKYLHFVDALNSVXXXXXXXXXXXXXXXXXXXXXXXLV--SEVNQLDILSAVGYSLKREVPK-KDLNRDDITALQHWVILLSKCLPARLPFKTFLRNMDRALNEVQDSQRMLTTTDYMEMLRKSQESADFALIEDQWVSCAGSKSWYRGFPCGLWTTFHTLTVNCAARDLSR----ISGLNVLIGIRGFVTRFFGCVHCREHFAKMAKYIRSEVQTHDDGILWLWEGHNK 1514
S+LY +DP+ L +T+ + GS+ W VEF++SWCGHC FAPTWK LA VK W+ + + A++CA+++N C F I +PT++ +K ++ +G + + AD + +++ LID +E+ + A E KL ID + YL ++FE SY+G+ + LD S + VRRV T + +K+ + PS L+ N + R VL Y ++ L+ + + + + +L S++ D+ SA+ Y L+ EV + L + AL+ +V +L+K P R + FL +++ L + + + + + L +E A A + W+ C GS+ +RGFPC LW FH LTV A +++ VL IRG+V FFGC C HF +MA V + + +LWLW HN+
Sbjct: 33 SALYSPSDPLTLLQADTVRGAVLGSRSAWAVEFFASWCGHCIAFAPTWKALAEDVKAWRPALYLAALDCAEETNSAVCRDFNIPGFPTVRFFK--------AFTKNGSGAVF--------PVAGAD------------VQTLRERLIDALESHHDTWPPACPPLEPAKLEE--IDGFFARNNEEYLALIFEKGGSYLGREVALDLSQHKGVAVRRVLNTEANVVRKFGVTDFPSCYLLFRNGSVSRVPVLMESRSFYTAYLQRLSGLTREAAQTTVAPTTANKIAPTVWKLADRSKIYMADLESALHYILRIEVGRFPVLEGQRLVALKKFVAVLAKYFPGRPLVQNFLHSVNEWLK--RQKRNKIPYSFFKTALDDRKEGAVLA-KKVNWIGCQGSEPHFRGFPCSLWVLFHFLTVQAARQNVDHSQEAAKAKEVLPAIRGYVHYFFGCRDCASHFEQMAAASMHRVGSPNAAVLWLWSSHNR 483 The following BLAST results are available for this feature:
BLAST of TCONS_00013378 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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