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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00013327 ID=TCONS_00013327|Name=TCONS_00013327|organism=Clytia hemisphaerica|type=transcript|length=4395bpRun BLAST on NCBI protein sequence of TCONS_00013327-protein >TCONS_00013327-protein ID=TCONS_00013327-protein|Name=TCONS_00013327-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1024bp MNYDRTVELQRWPGIGFGFSVIGGSDTHIPPMICALVRDSPALMSNQIYVRun BLAST on NCBI transcript from alignment at sc0000164:469280..489498- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00013327 ID=TCONS_00013327|Name=TCONS_00013327|organism=Clytia hemisphaerica|type=transcript|length=20219bp|location=Sequence derived from alignment at sc0000164:469280..489498- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000164:469280..489498- >TCONS_00013327 ID=TCONS_00013327|Name=TCONS_00013327|organism=Clytia hemisphaerica|type=CDS|length=58425bp|location=Sequence derived from alignment at sc0000164:469280..489498- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00013327 vs. Swiss-Prot (Human)
Match: PSD1 (PH and SEC7 domain-containing protein 1 OS=Homo sapiens GN=PSD PE=1 SV=2) HSP 1 Score: 306.22 bits (783), Expect = 2.431e-86 Identity = 170/399 (42.61%), Postives = 241/399 (60.40%), Query Frame = 2
Query: 1739 IASRLFTLNGYKDSDIAPLLGKNSDFSQQICREYLRFFNFEGIALDEAVRIFLAKFPLTGETQERERILIHFSKRYNECNLTNDMDEDGVHTLVCSLMLLNTDLHGQSITNKMTPNDFVTNLSGLNNGKDFPKEYLKTLYNSIKNKEIKFAQNE----------APPSPK------HKRNNSGNPFIELKVESSDAVVYEGLVYRKSVMDPGGRRTPLMRRNWRPYYCVLKGLVLL----SYKPDNMNGHEA--HSIGIHHALAGYAKDYKKRMFVFKLISADWSVYYLQVKSQDEVKIWMDSINXXXXXXXXXXXXXXXXXXXKFQRPVMPVSRTRLEPAEQLSHHMDKVTQSDEEYKIH--IEYTPEANNKYYTDWENKKDYLEYEVKRFKAYVSVL 2863
+A RL+ L+G++ +D+A LGKN+DFS+ + EYL+FF F G+ LD+A+R+FL + L GETQERER+L HFS+RY +CN EDG HTL C+LMLLNTDLHG +I +MT DF+ NL GLN+G DFP+E LK LY+SIKN+++++A +E A P+PK + +PF++L E AV G + RK DP R+TP +R W+ ++ +LKG++L YKP ++I IHHALA A DY KR VF L +ADW V+ Q S ++++ W+ INV AA+ S+PP PA V S KF RP++P + TRL EQ+ H K+ E + H + + K + K+ YLE+E R+ Y ++L
Sbjct: 561 LAKRLYRLDGFRKADVARHLGKNNDFSKLVAGEYLKFFVFTGMTLDQALRVFLKELALMGETQERERVLAHFSQRYFQCNPEALSSEDGAHTLTCALMLLNTDLHGHNIGKRMTCGDFIGNLEGLNDGGDFPRELLKALYSSIKNEKLQWAIDEEELRRSLSELADPNPKVIKRISGGSGSGSSPFLDLTPEPGAAVYKHGALVRKVHADPDCRKTPRGKRGWKSFHGILKGMILYLQKEEYKPGKALSETELKNAISIHHALATRASDYSKRPHVFYLRTADWRVFLFQAPSLEQMQSWITRINVVAAMFSAPPFPAAVSSQKKFSRPLLPSAATRLSQEEQVRTHEAKLKAMASELREHRAAQLGKKGRGKEAEEQRQKEAYLEFEKSRYSTYAALL 959 The following BLAST results are available for this feature:
BLAST of TCONS_00013327 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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