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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00013317 ID=TCONS_00013317|Name=TCONS_00013317|organism=Clytia hemisphaerica|type=transcript|length=1280bp
AAAAGATCGACCAGCGATGAAGGCTTTGCTGGAGCCATTTCTTACACTGA
CGAAGACGGACATGAACAGACGTATACGTTAGGACGTGACCGTTTGAAAT
ACGATGACGCGCGGCGCATGTGCAAAGAACACCATCATGGTGACCTAGCA
ACCATTAGCAACGCTAAGGAACAAGACTTTGTCATGAATGAAGTAGTGAT
CGAGGCAAACGATTATTGGATTGGATTAGATGATCGAGTCAATGAAGGAA
ATTTCCAATGGGTTGATAGCACTCCAGTGGAATACACACATTGGGGAAAT
CTTGAGCCAGACGATGGAACCAATAAGAGGCGTGGCTCTCTATCCTACCA
TAATGAAGATTGCGCAATCTTGCGTGAAAGTGGTGAATGGAATGATGTTA
ACTGCAATGATAAACATATGTTTATTTGTAAAAAACTCATTTTGTACCCT
GGTGCTAAAGATGTGATTTATACCCCGGTATACACCGAATCGGTTATcaa
atccaatgaaaatataCCGACCGAGAAATTCATGCTAGATCAAGACGATG
GTTGTGATAATAAGACTCGTAGTGGTATTTGTCAGCCTCACTTTGAAACT
TTCAGTCAACCTGATCACAACCAACCTGATATTGAAAGCAGTGAAGTCAT
CGCTGGAGGAAACGGCGGAGCGAGCGCTTTTCACGCGACAGTTGAAACTG
AAGAACTCGAATCAGGTAGAGCGAAAAATGAGATGAACCGATATGTACCG
ATATCGAGTCTAAGTAAGGACGCACCGATACTGAGTAAAGTTGAGGATAC
TAAAGCGTCGACGGCAGCTACAGAATCATCAAGCGTCGCACCCGATACAA
CACCAAACACAAATTCTTTTAACNTACCGATACTGAGTAAAAGTGGTGAT
ACTAAAGCGTCGACGGCAGCTACAGAATCATCAAGCGCCGCACCCGATAC
AACACCAAACACAAATTCTTTTAACATCACATCGAGCAATATTTTACCCT
TTACTGTGGTCACACCTGCACCAGGAATACAAGAAAATCACACCATTACA
AACAAAGATGTAGATGCAATCAAAGCCATAACTGAAGCTGTCCAAGACAT
AGCACACCAACAGAAAGTCAATGAACAAAACATGAAATCAGTTGATTCTT
TGGTCAACAATCTAAAAGATCAATATACGGATAGCAGCAATGCTCATACT
GATAAATCCATGGATTTAACAATCGATCCAGGAGATGCTCGACATAACAT
CTGGTCACGCTTAAAACCTATAGGTTCAAC Run BLAST on NCBI transcript from alignment at sc0000164:447312..449700- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00013317 ID=TCONS_00013317|Name=TCONS_00013317|organism=Clytia hemisphaerica|type=transcript|length=2389bp|location=Sequence derived from alignment at sc0000164:447312..449700- (Clytia hemisphaerica)
AAAAGATCGACCAGCGATGAAGGCTTTGCTGGAGGTTTGTGTGATTTTTT
TATTTTCTTATCATCTTTAAGACCTAGGTTGGAAACAAACAATACTCCTC
CCTACACAGCTCACGGTCGACCATCGCTGTCTCCAATTCTCCTAACTCAA
GCCATGTTGTTCTTTTTAAAATATCTAAAAAGGTATGTTTTCGCAGACGC
ATATATGCTCATGTTATGCTTAGGAATTTTGCAAATCTGAGTCTTCGTAT
GCTTATAAGCGTTATGCTTATAAAAAAAAACATGTAGTCTACGATAAACT
AACTTGATTTGAATAGTTTAAACTTTCTACGACGAGGTAAACGCTCCGCT
ATTTTTTTACATTTTTGATTGCTGACGTCACATACCGTTAACTTTTGTAA
CAGAATTACTCTCTTTCTTTGACAAATAACAATGAACGACGACTTTACGT
CCTAATTGATTGCTTCATTATTTTTCACTAACAACTGATGACTGACATAT
CAAACATAACAAAAGTAACGTAGCTCTATTTTTTCTCACTTTGACAGCCA
TTTCTTACACTGACGAAGACGGACATGAACAGACGTATACGTTAGGACGT
GACCGTTTGAAATACGATGACGCGCGGCGCATGTGCAAAGAACACCATCA
TGGTGACCTAGCAACCATTAGCAACGCTAAGGAACAAGACTTTGTCATGA
ATGAAGTAGTGATCGAGGCAAACGATTATTGGATTGGATTAGATGATCGA
GTCAATGAAGGAAATTTCCAATGGGTTGATAGGTGAGTGCTTTCTTTTTT
GGCCTCGATGTTAATTAAAAGAGTTTAACTAACTAATGTAATATGTATGG
GAAATGAGATGGTGCTGTTGAAAATGTGAATCTATGACATTTTCCCCTTG
CCTTTTTACCGGTATACTGAACCTCGCCAGTGTACTTCCTTGAATTACAA
GAATGAATTTCCTATAACAAGTTCTTAAGTCTGCAATTCAAATCGATATT
TAAAATAATTCTAAGTTGTATTCATTGAAAGGTCTATCTTCAGTTTTGAT
TGGCCGATATTTGTAAAAAGGGAAATTCAAATCGCTCGCAATGCCACCTT
TTATAAACGAGGATTAAGTTGTTTGGGTACAAGGCTATCGACAAAAAAGA
GTGATTTTCTTACTACCTTATCGGGGAAAAAAATGTCGGAGATTTATTTA
GTCGGGTTTTTTTTTCATTGAGGAAAAATTTCGTCACCTAGAGGCATTTT
CGTCACTTTCCCCCGATATTTTTCCCCGATAAGGTATAACAACGTTCTTG
TATAATTCAAAACTTCTTTCACAAAGTTTGCAAGCAAAAACGAAAAGTAA
TGTTTCATACTGTTGTTCATTCTTTCAGCACTCCAGTGGAATACACACAT
TGGGGAAATCTTGAGCCAGACGATGGAACCAATAAGAGGCGTGGCTCTCT
ATCCTACCATAATGAAGATTGCGCAATCTTGCGTGAAAGTGGTGAATGGA
ATGATGTTAACTGCAATGATAAACATATGTTTATTTGTAAAAAACTCATT
TTGTACCCTGGTGCTAAAGATGTGATTTATACCCCGGTATACACCGAATC
GGTTATCAAATCCAATGAAAATATACCGACCGAGAAATTCATGCTAGATC
AAGACGATGGTTGTGATAATAAGACTCGTAGTGGTATTTGTCAGCCTCAC
TTTGAAACTTTCAGTCAACCTGATCACAACCAACCTGATATTGAAAGCAG
TGAAGTCATCGCTGGAGGAAACGGCGGAGCGAGCGCTTTTCACGCGACAG
TTGAAACTGAAGAACTCGAATCAGGTAGAGCGAAAAATGAGATGAACCGA
TATGTACCGATATCGAGTCTAAGTAAGGACGCACCGATACTGAGTAAAGT
TGAGGATACTAAAGCGTCGACGGCAGCTACAGAATCATCAAGCGTCGCAC
CCGATACAACACCAAACACAAATTCTTTTAACNTACCGATACTGAGTAAA
AGTGGTGATACTAAAGCGTCGACGGCAGCTACAGAATCATCAAGCGCCGC
ACCCGATACAACACCAAACACAAATTCTTTTAACATCACATCGAGCAATA
TTTTACCCTTTACTGTGGTCACACCTGCACCAGGAATACAAGAAAATCAC
ACCATTACAAACAAAGATGTAGATGCAATCAAAGCCATAACTGAAGCTGT
CCAAGACATAGCACACCAACAGAAAGTCAATGAACAAAACATGAAATCAG
TTGATTCTTTGGTCAACAATCTAAAAGATCAATATACGGATAGCAGCAAT
GCTCATACTGATAAATCCATGGATTTAACAATCGATCCAGGAGATGCTCG
ACATAACATCTGGTCACGCTTAAAACCTATAGGTTCAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00013317-exon-sc0000164-1575043694:449667..449700 | TCONS_00013317-exon-sc0000164-1575043694:449667..449700 | Clytia hemisphaerica | exon |
| TCONS_00013317-exon-sc0000164-1575043694:448919..449153 | TCONS_00013317-exon-sc0000164-1575043694:448919..449153 | Clytia hemisphaerica | exon |
| TCONS_00013317-exon-sc0000164-1575043694:447312..448322 | TCONS_00013317-exon-sc0000164-1575043694:447312..448322 | Clytia hemisphaerica | exon |
| TCONS_00013317-exon-sc0000164-1510915933:449667..449700 | TCONS_00013317-exon-sc0000164-1510915933:449667..449700 | Clytia hemisphaerica | exon |
| TCONS_00013317-exon-sc0000164-1510915933:448919..449153 | TCONS_00013317-exon-sc0000164-1510915933:448919..449153 | Clytia hemisphaerica | exon |
| TCONS_00013317-exon-sc0000164-1510915933:447312..448322 | TCONS_00013317-exon-sc0000164-1510915933:447312..448322 | Clytia hemisphaerica | exon |
| TCONS_00013317-exon-sc0000164-1491911889:449667..449700 | TCONS_00013317-exon-sc0000164-1491911889:449667..449700 | Clytia hemisphaerica | exon |
| TCONS_00013317-exon-sc0000164-1491911889:448919..449153 | TCONS_00013317-exon-sc0000164-1491911889:448919..449153 | Clytia hemisphaerica | exon |
| TCONS_00013317-exon-sc0000164-1491911889:447312..448322 | TCONS_00013317-exon-sc0000164-1491911889:447312..448322 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000164 | supercontig | sc0000164:447312..449700 - |
Blast
BLAST of TCONS_00013317 vs. Swiss-Prot (Human)
Match: PGCA (Aggrecan core protein OS=Homo sapiens GN=ACAN PE=1 SV=2) HSP 1 Score: 81.2629 bits (199), Expect = 3.034e-16 Identity = 50/130 (38.46%), Postives = 69/130 (53.08%), Query Frame = 1
Query: 88 DRLKYDDARRMCKEHHHGDLATISNAKEQDFVMNEVVIEANDY-WIGLDDRVNEGNFQWVDSTPVEYTHWGNLEPDDGTNKRRGSLSYHNEDCAIL--RESGEWNDVNCNDKHMFICKKLILYPGAKDVI 468
DR + DA R C+E L++I +EQ+FV N A DY WIGL+DR EG+F+W D P+++ +W +PD+ EDC ++ E GEWNDV CN F CKK + G V+
Sbjct: 2222 DRETWVDAERRCREQQ-SHLSSIVTPEEQEFVNNN----AQDYQWIGLNDRTIEGDFRWSDGHPMQFENWRPNQPDN--------FFAAGEDCVVMIWHEKGEWNDVPCNYHLPFTCKKGTVACGEPPVV 2338
The following BLAST results are available for this feature:
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