TCONS_00013283 (transcript) - C. hemisphaerica

Overview
NameTCONS_00013283
Unique NameTCONS_00013283
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length764

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00013283 ID=TCONS_00013283|Name=TCONS_00013283|organism=Clytia hemisphaerica|type=transcript|length=764bp
AATCCGATTCTCAAATACCCGGGTTACCTCCCAATATGTCCTTCAGTTCA
TTACTTAACAATTTCAACCAAGAATTAGAGACTATAGATCCAAATAGCAC
ATCTTGGAACCAGAATTTTGATGGATCTTCGAATCAAAGCTATGATGGCT
CATCGAGTCAAGGCTATGATGGCTCATCGAATCAAGGCTATGATGGCTCA
TCGAATCAAGGCTAGacaattttttatctttacACCAACCATAAGTATAT
TCTCTACCGAACCACGGAAATGTATTATACTTATAGAGCTACGCTATGAA
AAGCTAGATTCAACCGATTCAAGGAGCTCTATAGGTttggttttaaaaaa
ttttgttggaagCCGCTTTTTGTGATGCGAAATGTCTACTTTATTCGCTT
ATCAATTACGTTACCAAGCTCCCTTGACtaaattgaaatattgaaatcaA
GGTAAAAAAACACGGTGAAAAAACACGGTGAAACTGGCCGTAATGACATA
GAAACAGAGGTataaacagaacttttgatttatGTTTCTGTGGAAAAACA
ATGAAGTTGCCGACCGAGATGTTTATGAAGTATCTTAGGTCTGGTTTAGT
CGGCCCACTTTtagccctgcctattctaattgctaattaaagttggcata
aagtggatcgaaagtgggctgtctaaagtgaaATGTTATGTAAAGTCGAC
ATGGTGCCCTATTTTGATTCGCGTCGAGTGGTTTTGCCGATCATAATCAA
GAAAGTAGGCAGAA
Run BLAST on NCBI

transcript from alignment at sc0000164:297134..297969+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00013283 ID=TCONS_00013283|Name=TCONS_00013283|organism=Clytia hemisphaerica|type=transcript|length=836bp|location=Sequence derived from alignment at sc0000164:297134..297969+ (Clytia hemisphaerica)
AATCCGATTCTCAAATACCCGGGTTACCTCCCAATATGTCCTTCAGTTCA
TTACTTAACAATTTCAACCAAGAATTAGAGACTATAGATCCAAATAGCAC
ATCTTGGAACCAGAATTTTGATGGATCTTCGAATCAAAGCTATGATGGCT
CATCGAGTCAAGGCTATGATGGCTCATCCAGTCAAGGCTATGATGGCTCA
TCCAGTCAAGGCTATGATGGCTCATCGAATCAAGGCTATGATGGCTCATC
GAATCAAGGCTATGATGGCTCATCGAATCAAGGCTAGacaattttttatc
tttacACCAACCATAAGTATATTCTCTACCGAACCACGGAAATGTATTAT
ACTTATAGAGCTACGCTATGAAAAGCTAGATTCAACCGATTCAAGGAGCT
CTATAGGTttggttttaaaaaattttgttggaagCCGCTTTTTGTGATGC
GAAATGTCTACTTTATTCGCTTATCAATTACGTTACCAAGCTCCCTTGAC
taaattgaaatattgaaatcaAGGTAAAAAAACACGGTGAAAAAACACGG
TGAAACTGGCCGTAATGACATAGAAACAGAGGTataaacagaacttttga
tttatGTTTCTGTGGAAAAACAATGAAGTTGCCGACCGAGATGTTTATGA
AGTATCTTAGGTCTGGTTTAGTCGGCCCACTTTtagccctgcctattcta
attgctaattaaagttggcataaagtggatcgaaagtgggctgtctaaag
tgaaATGTTATGTAAAGTCGACATGGTGCCCTATTTTGATTCGCGTCGAG
TGGTTTTGCCGATCATAATCAAGAAAGTAGGCAGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007422XLOC_007422Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00013283-exon-sc0000164-1491911889:297134..297295TCONS_00013283-exon-sc0000164-1491911889:297134..297295Clytia hemisphaericaexon
TCONS_00013283-exon-sc0000164-1510915933:297134..297295TCONS_00013283-exon-sc0000164-1510915933:297134..297295Clytia hemisphaericaexon
TCONS_00013283-exon-sc0000164-1575043694:297134..297295TCONS_00013283-exon-sc0000164-1575043694:297134..297295Clytia hemisphaericaexon
TCONS_00013283-exon-sc0000164-1491911889:297368..297969TCONS_00013283-exon-sc0000164-1491911889:297368..297969Clytia hemisphaericaexon
TCONS_00013283-exon-sc0000164-1510915933:297368..297969TCONS_00013283-exon-sc0000164-1510915933:297368..297969Clytia hemisphaericaexon
TCONS_00013283-exon-sc0000164-1575043694:297368..297969TCONS_00013283-exon-sc0000164-1575043694:297368..297969Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000164supercontigsc0000164:297134..297969 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.703162	1.68307	1.15805	0.920536	6.89639	4.63218	7.39658	6.46295	3.98619	7.53975	6.92969	3.83156	7.31237	7.61239	6.56995	10.7901	5.42258	5.80389	9.44539	9.17285	5.37705	5.96899	3.66469	4.99761	7.89271	11.9443	11.2195	12.6286	8.08836	6.72272
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00013283 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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