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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00013278 ID=TCONS_00013278|Name=TCONS_00013278|organism=Clytia hemisphaerica|type=transcript|length=1919bp
CTTTTTGTTTACATGATCACACCAAACACACAACCATGCTAAGAGGGACT
TGGACAAAGTTGTGTCtgtttaaattctttttaattgGTATATGGAAGCC
TACAATCAATACGAAAGGAGGTAAACATTAAAGATATGTCGACTGAAAAT
CTAATACTGATCATTGTTTTGGGTGGTGTCTTTCTCATTGTGGTTGCATG
GGCCATCTTCTTTTGGTATCGCTACACCAAATTTCACAGTGATTTGAATA
ATGATGTAGAATGCAGTGGAAGCCAACCGCAATCTCGTATTCCTATTCTG
CAAAGATTGGCTCGCTCCATGAGTGGTGGTGGACAACATAGCacaaatca
aaataatcaagAAAATTCTCCTTTGAATCAGTCATCCCATGATGAAGTCA
ATACTGTTTTGCCTGAAAATACTACTGTGTCACGATTAAGTCATGGACCT
CCAAGTTATAATGAGTTGAGGGGAAGTTTTACGCATTTGGAAAACAATGG
GGAAAGTAATTCCTCACCCCCTTCATATCATGAACTAAGGGATGTTAGTT
CACCTGTTGTAGAAGGTGCTGATGGGGAAAACAGCTAATCTCGTTTGGTA
TTCCTGCTACTAGTGTGCTGCATAATAACCTTTTCAAGAATTGTTTAGAA
AAAGGAGGATCAATATCTTTCTTGAGATACGCATTTGTAaatcaaagttg
aaatttttttttacatctcGGAATATGGAATTTCACTGGGACAACACAAC
GTAACACAAAGGCAAGCAATGCTTAAATTTTATGagcattgtaatttttt
tagccAAAGTGACCTGGAGAGAATGCTACAGTATATAATTGTATTTTAGC
AATTCCTCAAATCTCATAGggtgtacacgcttttttttataagaatggtg
taaatctatttcatcatggatattcttaactgtTTTGGGATAATTATCCt
agaatattcttacagcattcttaggttaggatcctacttcagactagatt
taacatttagtacatacgtctcaagcataaaatagcatttttgtgaaagg
agtgagccttacttgggggtaattgataatttttaattgaaaatgctcta
aaaatggcattcttagcttgatagcaaaattccatgattcCAAAATTCCA
Agtcttaatttttcatcatggacattcttataaagtgtattcttataaat
aaagtgTGTATTTTTACGTAGTTTTATATTTGTATTTAATGTTATATATT
CTTTTTTAAGAAACCATAATTtagagggggtttatctaacaaatcctgca
ttactaaaaatagaaaaagaacaacaaatctTGCCGttcacaaccccgac
cgaaagtgactgtaccatcCCTACGgatcagtagcgtagacaagggggcg
caaaatttgtgttggAGAGCAGATTCAATTATGAcccagtaattatcttt
ttatattacagataattactgtgtcataaaaatctgctctcctacacaaa
ttttgcgcccccccccccttgtctacgctactgcggattcattcctcttt
gtttatcacgggaattaactacatgtggtttaaaagaacgaaaaattacG
TATGCGTGGtattaatgcaggaattgtcaGTCGAGCTCACTGTTTAAGAT
AATATGAAgtatatttttaaatatatataaatttctGTAATAACgaaagt
aaatatttttatatttgataaggTGCACCTTGTGATTAGTGAACTAATAA
GCACtgcatttttgcattttaaaccagattttttataataattttataaT
AATTTCTAGAATCATGGATAACTtaacttttttatatttgaacatttTGC
AATTATTATATTGCTCCGTATTATTAACAATTATAGTCCTTATTCATGga
ttttaaaaatcaataaact Run BLAST on NCBI protein sequence of TCONS_00013278-protein >TCONS_00013278-protein ID=TCONS_00013278-protein|Name=TCONS_00013278-protein|organism=Clytia hemisphaerica|type=polypeptide|length=150bp
MSTENLILIIVLGGVFLIVVAWAIFFWYRYTKFHSDLNNDVECSGSQPQS
RIPILQRLARSMSGGGQHSTNQNNQENSPLNQSSHDEVNTVLPENTTVSR
LSHGPPSYNELRGSFTHLENNGESNSSPPSYHELRDVSSPVVEGADGENS Run BLAST on NCBI transcript from alignment at sc0000164:135021..139249+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00013278 ID=TCONS_00013278|Name=TCONS_00013278|organism=Clytia hemisphaerica|type=transcript|length=4229bp|location=Sequence derived from alignment at sc0000164:135021..139249+ (Clytia hemisphaerica)
CTTTTTGTTTACATGATCACACCAAACACACAACCATGCTAAGAGGGACT
TGGACAAAGTTGTGTCtgtttaaattctttttaattgGTATATGGAAGCC
TACAGTAAGTCTAGTATTTGTTTCTGTATTCAATGCGAGCGACAGTCTTT
GAATTACTCcagcagaaatttttttaatgataacGCATATATATAAATAT
AGCTATTAAAATTGATCTGGCTCTGTTCTGACTGATAGCTGTCACCTAGA
TAGatacaagataatttatcccaGTCGTACTGGCTGGAGTAATTTTATTA
ACAATAAACTGCTGCGTTTTTCCAAACGACTatcgtgaagtcgggtaact
tgcatcagtggagggaaacttgcatatggcatagccctcaaatgaatgac
ctggcgctctggtcattaaaatacaaagttaaatcaaaacaaacctgatt
taaaaaatttgcagATGGCAAAATGTATATCTCCTAATCATAAGTgatgt
catgcataattatgtttAATATCATCATAAAATTTGAGGTTACAAGTCCA
GCAGACATCGAGTATAACGTTTGAATTCTCGCCATCTTGAAATTTATGAT
CTTGCATGATTTTTGATTATCCAACCACTCTGTTTCATCTACCCGGGACT
CACACGGCAAATatgagattctaaaatggtaccgtaacttggtctaatgt
cgacacccctcctctaatttcgacaccctttttatcagctgaaatttata
gaaaggttgaaactgtttttctttgattaNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNATTTCAAACAATGCAAGGTCTTCATTTTGC
ATGTCCACACAAGAGAAAGAGATACCAAATGTATAATgtcttcttttgaa
attctaatCAACAAACGTCAATAGGAGCGCGGGCGTCTGGtcttagggaa
aaagagcccCCAGCCAGAACTTTAGGttctagcccccccccctaagagCC
AGAGGGGTTGCATTCTAtgagaagggtgtcggaattagaggaggggtgtt
gacattagaccaagttacggtagagtagagctgcaagcacagcattttgt
tttgaaattttgctgctttgattggtcagtcattcatttgatggctatgc
aagtttccctccactgatgcaagttacccgacttcacggtattgCATTCA
GCTTTTTAATGCTTACTGACACTAACAGGGCCcgataccgtgagatcggg
taacttgcatcagtggaggctaacattcatagccctcaaatgaatgacct
ggctggtcattaaaatacaaagttaaaataaaacaaaaatggtagagtag
agctgcgagcagagctgcgagcggagctgcgtagttcatttgttttgaaa
ttttgctgctttgattggtcattcatttgagggctatgcatgttagcctc
ctctgatgcaagttacccgacttcacggtagatAATACCCTGACATTATC
TGGTTTTTAAATGATACCATTTTGTTCCtgtatttgaaaccattgcattg
tTGGTTAATCTTATCTGAAAGCCTGGGTAACATGTGAAGTAGGTGACAGA
GGTAGAATTGGGTTAAGTCAATATTAGGCCAACTTACGATAACAAATACG
ACCCCCTAAGTGATTTCCTATAGTGCAACCAGATTTTAAATTTCCACCAT
TGAGTTTTTTCTCATCACCTTTAGACCAtcaagaaaatttgatttcaact
GTAAAAAAATGATGGTTTGACAAGCAGGTCTCTTAATTCTTATCTGTCAA
AAGCTTGTCcgattttcatttaatatatTGTTACTGAATTATAATTTCAT
ACTTCATATTTTAGATCAATACGAAAGGAGGTAAACATTAAAGATATGTC
GACTGAAAATCTAATACTGATCATTGTTTTGGGTGGTGTCTTTCTCATTG
TGGTTGCATGGGCCATCTTCTTTTGGTATCGCTACACCAAATTTCACAGT
GATTTGAATAATGATGTAGAATGCAGTGGAAGCCAACCGCAATCTCGTAT
TCCTATTCTGCAAAGATTGGCTCGCTCCATGAGTGGTGGTGGACAACATA
GCacaaatcaaaataatcaagAAAATTCTCCTTTGAATCAGTCATCCCAT
GATGAAGTCAATACTGTTTTGCCTGAAAATACTACTGTGTCACGATTAAG
TCATGGACCTCCAAGTTATAATGAGTTGAGGGGAAGTTTTACGCATTTGG
AAAACAATGGGGAAAGTAATTCCTCACCCCCTTCATATCATGAACTAAGG
GATGTTAGTTCACCTGTTGTAGAAGGTGCTGATGGGGAAAACAGCTAATC
TCGTTTGGTATTCCTGCTACTAGTGTGCTGCATAATAACCTTTTCAAGAA
TTGTTTAGAAAAAGGAGGATCAATATCTTTCTTGAGATACGCATTTGTAa
atcaaagttgaaatttttttttacatctcGGAATATGGAATTTCACTGGG
ACAACACAACGTAACACAAAGGCAAGCAATGCTTAAATTTTATGagcatt
gtaatttttttagccAAAGTGACCTGGAGAGAATGCTACAGTATATAATT
GTATTTTAGCAATTCCTCAAATCTCATAGggtgtacacgcttttttttat
aagaatggtgtaaatctatttcatcatggatattcttaactgtTTTGGGA
TAATTATCCtagaatattcttacagcattcttaggttaggatcctacttc
agactagatttaacatttagtacatacgtctcaagcataaaatagcattt
ttgtgaaaggagtgagccttacttgggggtaattgataatttttaattga
aaatgctctaaaaatggcattcttagcttgatagcaaaattccatgattc
CAAAATTCCAAgtcttaatttttcatcatggacattcttataaagtgtat
tcttataaataaagtgTGTATTTTTACGTAGTTTTATATTTGTATTTAAT
GTTATATATTCTTTTTTAAGAAACCATAATTtagagggggtttatctaac
aaatcctgcattactaaaaatagaaaaagaacaacaaatctTGCCGttca
caaccccgaccgaaagtgactgtaccatcCCTACGgatcagtagcgtaga
caagggggcgcaaaatttgtgttggAGAGCAGATTCAATTATGAcccagt
aattatctttttatattacagataattactgtgtcataaaaatctgctct
cctacacaaattttgcgcccccccccccttgtctacgctactgcggattc
attcctctttgtttatcacgggaattaactacatgtggtttaaaagaacg
aaaaattacGTATGCGTGGtattaatgcaggaattgtcaGTCGAGCTCAC
TGTTTAAGATAATATGAAgtatatttttaaatatatataaatttctGTAA
TAACgaaagtaaatatttttatatttgataaggTGCACCTTGTGATTAGT
GAACTAATAAGCACtgcatttttgcattttaaaccagattttttataata
attttataaTAATTTCTAGAATCATGGATAACTtaacttttttatatttg
aacatttTGCAATTATTATATTGCTCCGTATTATTAACAATTATAGTCCT
TATTCATGgattttaaaaatcaataaact Coding sequence (CDS) from alignment at sc0000164:135021..139249+ >TCONS_00013278 ID=TCONS_00013278|Name=TCONS_00013278|organism=Clytia hemisphaerica|type=CDS|length=453bp|location=Sequence derived from alignment at sc0000164:135021..139249+ (Clytia hemisphaerica)
ATGTCGACTGAAAATCTAATACTGATCATTGTTTTGGGTGGTGTCTTTCT
CATTGTGGTTGCATGGGCCATCTTCTTTTGGTATCGCTACACCAAATTTC
ACAGTGATTTGAATAATGATGTAGAATGCAGTGGAAGCCAACCGCAATCT
CGTATTCCTATTCTGCAAAGATTGGCTCGCTCCATGAGTGGTGGTGGACA
ACATAGCacaaatcaaaataatcaagAAAATTCTCCTTTGAATCAGTCAT
CCCATGATGAAGTCAATACTGTTTTGCCTGAAAATACTACTGTGTCACGA
TTAAGTCATGGACCTCCAAGTTATAATGAGTTGAGGGGAAGTTTTACGCA
TTTGGAAAACAATGGGGAAAGTAATTCCTCACCCCCTTCATATCATGAAC
TAAGGGATGTTAGTTCACCTGTTGTAGAAGGTGCTGATGGGGAAAACAGC
TAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00013278-exon-sc0000164-1491911889:135021..135124 | TCONS_00013278-exon-sc0000164-1491911889:135021..135124 | Clytia hemisphaerica | exon |
| TCONS_00013278-exon-sc0000164-1510915933:135021..135124 | TCONS_00013278-exon-sc0000164-1510915933:135021..135124 | Clytia hemisphaerica | exon |
| TCONS_00013278-exon-sc0000164-1575043694:135021..135124 | TCONS_00013278-exon-sc0000164-1575043694:135021..135124 | Clytia hemisphaerica | exon |
| TCONS_00013278-exon-sc0000164-1491911889:137435..139249 | TCONS_00013278-exon-sc0000164-1491911889:137435..139249 | Clytia hemisphaerica | exon |
| TCONS_00013278-exon-sc0000164-1510915933:137435..139249 | TCONS_00013278-exon-sc0000164-1510915933:137435..139249 | Clytia hemisphaerica | exon |
| TCONS_00013278-exon-sc0000164-1575043694:137435..139249 | TCONS_00013278-exon-sc0000164-1575043694:137435..139249 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000164 | supercontig | sc0000164:135021..139249 + |
Blast
The following BLAST results are available for this feature:
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