TCONS_00013261 (transcript) - C. hemisphaerica

Overview
NameTCONS_00013261
Unique NameTCONS_00013261
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2043

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00013261 ID=TCONS_00013261|Name=TCONS_00013261|organism=Clytia hemisphaerica|type=transcript|length=2043bp
GATAGTAACCACCAGACAAACAAATCTCTTAAGTTTGTGGCTTCCTGAGA
TAATAGAAAAAGTACTGAATCATCACAAAAAAGTACTAAAGTGAACTTTT
CTGGGAATTCTCAGTTCGTTTGGTTTTCCCCACTTTTCTGTTTGACTGTA
TGACGTCTTGTATATAAATACTACGTGTCTGAtgtgttttcagaaaaaat
caattcatttttatgatttatagTGAGAGATACGTTTGAGATAGAAAAAT
CATTGGAAGTGATAGTAAACCTTGAGTTAGTTGGAAAGTTTTGAACATTC
AAACTTGAAACAGAGAAAGTCTATTATATCAACTTTCTTCAGTGAAACAT
TTATTTGTTGATTTGTTGGCTTGGAGCTGAATTTGAAGGGATAATCGGTG
TTTCATATAGAGACGTTATTGAAGATTCATTTCACAGCAAAGACatattt
ttatggatttttgaaaaaactaaatgGCACCTGAAACTACCGCAACCGCT
ATTCCTAACAAAACACAAAACGAAATTACTGCTTATGACGAAACGCCAAA
CGAGACAAGAGACATTACCACACCAATGAATTCTTCAGAAAACAATTCGG
TCACTGGTCATGCTTCTAAAGTTGAAAATTCTACCGATTTTGTGGATGCT
CCACCTAGTTTAGCATCCAACTCTCCTAACACAGATTCTTCTAAAAACGA
TGCAATCACTACTTCTGGTGCATGCGCTGTCGTGACCAACCAACAAACTG
GATTGAATCCATTTCTAGAAGACGACCATCCTGAAGATATTCAACCATGT
CTAGATATCGAAGACATTGATAAATTCCAATGGAAAACCATAGGTGCTGG
AGATGAAGATACCATCGACGGATCACTTTTCCTCCACAGTAACAAAGAAG
GTGGACCCAATTTCTATTTAACTTGTATGCGGTGGCAGCGAAAAGATTAC
GAGGGCATTCTTACCAGACAGATTTCGTATCGACCGAAAAGTTTCGAGGC
TTGTCCGCCGTTGTCATCGACTAAGCGAGGACACTCTTCCAGTAGGTTTA
ATGTCAAAAAAATGTTCAGTAAACTTAAAATTCATGGTGTTAATaagaaa
caacaaaagaaaaaatttgatatttattcaGACGATTTCTACCCGATGGA
TACTTTCCCACGTGGGACATTATTGATCATTAATATGAAGAATTTCAGTT
TGACTTCACGTCTACGCAGAAACCCAGGAAGTGATCCAACAAGAAAGGGT
ACAGACATTGACGCTGAATCTTTAACTAGACTATTTCTAGATCTTGGTTT
CTACGTTGAACGGTTAGATAATCCTACCACAGCTGAAATTTGCACCTTTA
TTAAAGAGACTGTTAACGAGGATCATTCAAATCGTTCTATTATCGCATGC
GCAGTGTTAAGCCACGGTGAAGACGGTCTGATCTATAGTAAAGATGGTGA
AATGAAAATTGACGATATTGTTAAACCCTTTCGTATCGATTCTCTAGCCG
GGAAACCGAAATTATTCATCATCCAAGCTTGTCGTGGTGACGAATATATG
GAAAGCCAAGACCAGGTTGATGGTCCACCCTTAGCCAATAAAGGCAGTGC
CCAATACAATTTATCGTTACCAAGCGAAGCTGATGTATTATACGCCTATT
CTACAGTCTCAGGTTATTTTTCATGGCGCAATCAAGCACGTGGGTCATGG
TTTATAGAAGCTCTTGTCAAAACTTTCCGTACCCATGCGCACAAAATGGA
CGTACTGCGCATGCTTACTAAAGTCAATTCTAAGGTAGCCGATCGTTTCC
CTGAGACTACGGATGCTGTcatcaataaaaagaaacagATTTCTTCGTTT
GTTTCACAACTAAGAGAAGATTTGTTTTTGTTCCCACCGTATGGGCCATT
GAAAAACTAAatcaagaaaatgattttcaaacttgttTCTTTATATTAAC
TGTATTGGTGTTTtgtaatttgaatttaaaaacttttataatatttttat
ataccTAAGAATTTTGTtatctaaaaaatgaaatttagtcaat
Run BLAST on NCBI

protein sequence of TCONS_00013261-protein

>TCONS_00013261-protein ID=TCONS_00013261-protein|Name=TCONS_00013261-protein|organism=Clytia hemisphaerica|type=polypeptide|length=478bp
MAPETTATAIPNKTQNEITAYDETPNETRDITTPMNSSENNSVTGHASKV
ENSTDFVDAPPSLASNSPNTDSSKNDAITTSGACAVVTNQQTGLNPFLED
DHPEDIQPCLDIEDIDKFQWKTIGAGDEDTIDGSLFLHSNKEGGPNFYLT
CMRWQRKDYEGILTRQISYRPKSFEACPPLSSTKRGHSSSRFNVKKMFSK
LKIHGVNKKQQKKKFDIYSDDFYPMDTFPRGTLLIINMKNFSLTSRLRRN
PGSDPTRKGTDIDAESLTRLFLDLGFYVERLDNPTTAEICTFIKETVNED
HSNRSIIACAVLSHGEDGLIYSKDGEMKIDDIVKPFRIDSLAGKPKLFII
QACRGDEYMESQDQVDGPPLANKGSAQYNLSLPSEADVLYAYSTVSGYFS
WRNQARGSWFIEALVKTFRTHAHKMDVLRMLTKVNSKVADRFPETTDAVI
NKKKQISSFVSQLREDLFLFPPYGPLKN
Run BLAST on NCBI

transcript from alignment at sc0000163:36927..38969

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00013261 ID=TCONS_00013261|Name=TCONS_00013261|organism=Clytia hemisphaerica|type=transcript|length=2043bp|location=Sequence derived from alignment at sc0000163:36927..38969 (Clytia hemisphaerica)
attgactaaatttcattttttagataACAAAATTCTTAggtatataaaaa
tattataaaagtttttaaattcaaattacaAAACACCAATACAGTTAATA
TAAAGAaacaagtttgaaaatcattttcttgatTTAGTTTTTCAATGGCC
CATACGGTGGGAACAAAAACAAATCTTCTCTTAGTTGTGAAACAAACGAA
GAAATctgtttctttttattgatgACAGCATCCGTAGTCTCAGGGAAACG
ATCGGCTACCTTAGAATTGACTTTAGTAAGCATGCGCAGTACGTCCATTT
TGTGCGCATGGGTACGGAAAGTTTTGACAAGAGCTTCTATAAACCATGAC
CCACGTGCTTGATTGCGCCATGAAAAATAACCTGAGACTGTAGAATAGGC
GTATAATACATCAGCTTCGCTTGGTAACGATAAATTGTATTGGGCACTGC
CTTTATTGGCTAAGGGTGGACCATCAACCTGGTCTTGGCTTTCCATATAT
TCGTCACCACGACAAGCTTGGATGATGAATAATTTCGGTTTCCCGGCTAG
AGAATCGATACGAAAGGGTTTAACAATATCGTCAATTTTCATTTCACCAT
CTTTACTATAGATCAGACCGTCTTCACCGTGGCTTAACACTGCGCATGCG
ATAATAGAACGATTTGAATGATCCTCGTTAACAGTCTCTTTAATAAAGGT
GCAAATTTCAGCTGTGGTAGGATTATCTAACCGTTCAACGTAGAAACCAA
GATCTAGAAATAGTCTAGTTAAAGATTCAGCGTCAATGTCTGTACCCTTT
CTTGTTGGATCACTTCCTGGGTTTCTGCGTAGACGTGAAGTCAAACTGAA
ATTCTTCATATTAATGATCAATAATGTCCCACGTGGGAAAGTATCCATCG
GGTAGAAATCGTCtgaataaatatcaaattttttcttttgttgtttcttA
TTAACACCATGAATTTTAAGTTTACTGAACATTTTTTTGACATTAAACCT
ACTGGAAGAGTGTCCTCGCTTAGTCGATGACAACGGCGGACAAGCCTCGA
AACTTTTCGGTCGATACGAAATCTGTCTGGTAAGAATGCCCTCGTAATCT
TTTCGCTGCCACCGCATACAAGTTAAATAGAAATTGGGTCCACCTTCTTT
GTTACTGTGGAGGAAAAGTGATCCGTCGATGGTATCTTCATCTCCAGCAC
CTATGGTTTTCCATTGGAATTTATCAATGTCTTCGATATCTAGACATGGT
TGAATATCTTCAGGATGGTCGTCTTCTAGAAATGGATTCAATCCAGTTTG
TTGGTTGGTCACGACAGCGCATGCACCAGAAGTAGTGATTGCATCGTTTT
TAGAAGAATCTGTGTTAGGAGAGTTGGATGCTAAACTAGGTGGAGCATCC
ACAAAATCGGTAGAATTTTCAACTTTAGAAGCATGACCAGTGACCGAATT
GTTTTCTGAAGAATTCATTGGTGTGGTAATGTCTCTTGTCTCGTTTGGCG
TTTCGTCATAAGCAGTAATTTCGTTTTGTGTTTTGTTAGGAATAGCGGTT
GCGGTAGTTTCAGGTGCcatttagttttttcaaaaatccataaaaatatG
TCTTTGCTGTGAAATGAATCTTCAATAACGTCTCTATATGAAACACCGAT
TATCCCTTCAAATTCAGCTCCAAGCCAACAAATCAACAAATAAATGTTTC
ACTGAAGAAAGTTGATATAATAGACTTTCTCTGTTTCAAGTTTGAATGTT
CAAAACTTTCCAACTAACTCAAGGTTTACTATCACTTCCAATGATTTTTC
TATCTCAAACGTATCTCTCActataaatcataaaaatgaattgatttttt
ctgaaaacacaTCAGACACGTAGTATTTATATACAAGACGTCATACAGTC
AAACAGAAAAGTGGGGAAAACCAAACGAACTGAGAATTCCCAGAAAAGTT
CACTTTAGTACTTTTTTGTGATGATTCAGTACTTTTTCTATTATCTCAGG
AAGCCACAAACTTAAGAGATTTGTTTGTCTGGTGGTTACTATC

Coding sequence (CDS) from alignment at sc0000163:36927..38969

>TCONS_00013261 ID=TCONS_00013261|Name=TCONS_00013261|organism=Clytia hemisphaerica|type=CDS|length=1437bp|location=Sequence derived from alignment at sc0000163:36927..38969 (Clytia hemisphaerica)
TTAGTTTTTCAATGGCCCATACGGTGGGAACAAAAACAAATCTTCTCTTA
GTTGTGAAACAAACGAAGAAATctgtttctttttattgatgACAGCATCC
GTAGTCTCAGGGAAACGATCGGCTACCTTAGAATTGACTTTAGTAAGCAT
GCGCAGTACGTCCATTTTGTGCGCATGGGTACGGAAAGTTTTGACAAGAG
CTTCTATAAACCATGACCCACGTGCTTGATTGCGCCATGAAAAATAACCT
GAGACTGTAGAATAGGCGTATAATACATCAGCTTCGCTTGGTAACGATAA
ATTGTATTGGGCACTGCCTTTATTGGCTAAGGGTGGACCATCAACCTGGT
CTTGGCTTTCCATATATTCGTCACCACGACAAGCTTGGATGATGAATAAT
TTCGGTTTCCCGGCTAGAGAATCGATACGAAAGGGTTTAACAATATCGTC
AATTTTCATTTCACCATCTTTACTATAGATCAGACCGTCTTCACCGTGGC
TTAACACTGCGCATGCGATAATAGAACGATTTGAATGATCCTCGTTAACA
GTCTCTTTAATAAAGGTGCAAATTTCAGCTGTGGTAGGATTATCTAACCG
TTCAACGTAGAAACCAAGATCTAGAAATAGTCTAGTTAAAGATTCAGCGT
CAATGTCTGTACCCTTTCTTGTTGGATCACTTCCTGGGTTTCTGCGTAGA
CGTGAAGTCAAACTGAAATTCTTCATATTAATGATCAATAATGTCCCACG
TGGGAAAGTATCCATCGGGTAGAAATCGTCtgaataaatatcaaattttt
tcttttgttgtttcttATTAACACCATGAATTTTAAGTTTACTGAACATT
TTTTTGACATTAAACCTACTGGAAGAGTGTCCTCGCTTAGTCGATGACAA
CGGCGGACAAGCCTCGAAACTTTTCGGTCGATACGAAATCTGTCTGGTAA
GAATGCCCTCGTAATCTTTTCGCTGCCACCGCATACAAGTTAAATAGAAA
TTGGGTCCACCTTCTTTGTTACTGTGGAGGAAAAGTGATCCGTCGATGGT
ATCTTCATCTCCAGCACCTATGGTTTTCCATTGGAATTTATCAATGTCTT
CGATATCTAGACATGGTTGAATATCTTCAGGATGGTCGTCTTCTAGAAAT
GGATTCAATCCAGTTTGTTGGTTGGTCACGACAGCGCATGCACCAGAAGT
AGTGATTGCATCGTTTTTAGAAGAATCTGTGTTAGGAGAGTTGGATGCTA
AACTAGGTGGAGCATCCACAAAATCGGTAGAATTTTCAACTTTAGAAGCA
TGACCAGTGACCGAATTGTTTTCTGAAGAATTCATTGGTGTGGTAATGTC
TCTTGTCTCGTTTGGCGTTTCGTCATAAGCAGTAATTTCGTTTTGTGTTT
TGTTAGGAATAGCGGTTGCGGTAGTTTCAGGTGCcat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007403XLOC_007403Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00013261-proteinTCONS_00013261-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00013261-exon-sc0000163-1491911889:36927..38969TCONS_00013261-exon-sc0000163-1491911889:36927..38969Clytia hemisphaericaexon
TCONS_00013261-exon-sc0000163-1510915933:36927..38969TCONS_00013261-exon-sc0000163-1510915933:36927..38969Clytia hemisphaericaexon
TCONS_00013261-exon-sc0000163-1575043694:36927..38969TCONS_00013261-exon-sc0000163-1575043694:36927..38969Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000163supercontigsc0000163:36927..38969 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.464039	0.295116	0.54757	0.771425	0.299287	0.494501	0.778167	1.23847	1.23889	8.5007	0.817623	1.22275	7.19213	4.96082	4.47944	6.56523	1.68118	2.67011	6.58035	8.75271	0.130923	0.256899	1.15336	1.38806	3.4442	3.51851	5.50528	5.60967	3.67251	1.1594
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR015917Pept_C14A
IPR033139Caspase_cys_AS
IPR001309Pept_C14_p20
IPR002138Pept_C14_p10
IPR029030Caspase-like_dom
Vocabulary: Molecular Function
TermDefinition
GO:0008234cysteine-type peptidase activity
GO:0004197cysteine-type endopeptidase activity
Vocabulary: Biological Process
TermDefinition
GO:0006508proteolysis
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006508 proteolysis
molecular_function GO:0004197 cysteine-type endopeptidase activity
molecular_function GO:0008234 cysteine-type peptidase activity
Blast
[Close]
BLAST of TCONS_00013261 vs. Swiss-Prot (Human)
Match: CASP3 (Caspase-3 OS=Homo sapiens GN=CASP3 PE=1 SV=2)

HSP 1 Score: 186.037 bits (471), Expect = 4.435e-53
Identity = 105/258 (40.70%), Postives = 147/258 (56.98%), Query Frame = 3 
Query: 1131 DDFYPMDTFPRGTLLIINMKNFSLTSRLRRNPGSDPTRKGTDIDAESLTRLFLDLGFYVERLDNPTTAEICTFIKETVNEDHSNRSIIACAVLSHGEDGLIYSKDGEMKIDDIVKPFRID---SLAGKPKLFIIQACRGDEY---MESQDQVDGPPLANKGSAQYNLSLPSEADVLYAYSTVSGYFSWRNQARGSWFIEALVKTFRTHAHKMDVLRMLTKVNSKVADRFPE-TTDAVINKKKQISSFVSQLREDLFLF 1883
            D+ Y MD    G  +IIN KNF  ++ +        +R GTD+DA +L   F +L + V   ++ T  EI   +++   EDHS RS   C +LSHGE+G+I+  +G + +  I   FR D   SL GKPKLFIIQACRG E    +E+   VD     +K        +P EAD LYAYST  GY+SWRN   GSWFI++L    + +A K++ + +LT+VN KVA  F   + DA  + KKQI   VS L ++L+ +
Sbjct:   34 DNSYKMDYPEMGLCIIINNKNFHKSTGM-------TSRSGTDVDAANLRETFRNLKYEVRNKNDLTREEIVELMRDVSKEDHSKRSSFVCVLLSHGEEGIIFGTNGPVDLKKITNFFRGDRCRSLTGKPKLFIIQACRGTELDCGIETDSGVDDDMACHK--------IPVEADFLYAYSTAPGYYSWRNSKDGSWFIQSLCAMLKQYADKLEFMHILTRVNRKVATEFESFSFDATFHAKKQIPCIVSMLTKELYFY 276
The following BLAST results are available for this feature:
BLAST of TCONS_00013261 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CASP34.435e-5340.70Caspase-3 OS=Homo sapiens GN=CASP3 PE=1 SV=2[more]
back to top