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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00013254 ID=TCONS_00013254|Name=TCONS_00013254|organism=Clytia hemisphaerica|type=transcript|length=817bp
AGTAATGTTGGTTGTAACATGGTCCAAGGTCGCACTCACTATAATACAAT
GTGTTATCATTGCAATCAACGAAACAATAATAGAAGCGTACAATCGAAAA
GTGATCATAGCATATGTAACatatataaagaaaataaatagtCCAACTGA
ATCTGAAGCTAATAGCGGCTTAGTGGATGCTACCAAGTCAATTAGGAGTT
GAATGTATATTATAATCCATAGTATACCAGATTGTATAGTATAGTTTGTT
GAGCGTAGAGTTGGACGACTGAATAACACCAGTGTAATGAGACAAGATAT
TATAGATATTGATGTTACGATAATACGTGTTACTAAATGCGTTTGTGTTT
TGTCTTTTGAATAATCAATAGCTGTTATAATCATTTGTACCAGGTTATAA
AGAACGACAAGTGATAACAAAAATCGTATACTTGTGCGTCTCCTTTTAGA
AAAATAGTTCTGATATATTGATTCGAGTGCTGGACTATCGAATGTTGATG
TGATTAGATCGATAAAACCCGATAGCGAAACAGACGCTTTACGATAGTTT
TCGTTGTCATGGACAACTCCGGGTCGACCATTttggatgacgtcattttg
ttgTTTACGTCTCATTTCGGTTAACGGACTTTTAGCAGCGACGGAGACCA
TGTGTGTTTGTTCTCCTCCATTGAGGGACATTTCGTCTACGCTGCTTGGT
GATACACGTATTGTCATAACAAGCCCCTGTGAAGGAGAGTACGCTAAAAT
CTACTATTTATCTTCTAGAtcgttttgatttaaatttcatcttttttttt
aagctttttgttacttt Run BLAST on NCBI transcript from alignment at sc0000163:284686..285554- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00013254 ID=TCONS_00013254|Name=TCONS_00013254|organism=Clytia hemisphaerica|type=transcript|length=869bp|location=Sequence derived from alignment at sc0000163:284686..285554- (Clytia hemisphaerica)
AGTAATGTTGGTTGTAACATGGTCCAAGGTCGCACTCACTATAATACAAT
GTGTTATCATTGCAATCAACGAAACAATAATAGAAGCGTACAATCGAAAA
GTGATCATAGCATATGTAACATATATAAAGAAAATAAATAGTCCAACTGA
ATCTGAAGCTAATAGCGGCTTAGTGGATGCTACCAAGTCAATTAGGAGTT
GAATGTATATTATAATCCATAGTATACCAGATTGTATAGTATAGTTTGTT
GAGCGTAGAGTTGGACGACTGAATAACACCAGTGTAATGAGACAAGATAT
TATAGATATTGATGTTACGATAATACGTGTTACTAAATGCGTTTGTGTTT
TGTCTTTTGAATAATCAATAGCTGTTATAATCATTTGTACCAGGTTATAA
AGAACGACAAGTGATAACAAAAATCGTATACTTGTGCGTCTCCTTTTAGA
AAAATAGTTCTGATATATTGATTCGAGTGCTGGACTATCGAATGTTGATG
TGATTAGATCGATAAAACCCGATAGCGAAACAGACGCTTTACGATAGTTT
TCGTTGTCATGGACAACTCCGGGTCGACCATTTTGGATGACGTCATTTTG
TTGTTTACGTCTCATTTCGGTTAACGGACTTTTAGCAGCGACGGAGACCA
TGTGTGTTTGTTCTCCTCCATTGAGGGACATTTCGTCTACGCTGCTTGGT
GACACACGTATTGTCATAACAAGCCCCTGTGAAGGAGAGTNCGCTGCTAG
GTGATACACGTATTGTCATAACAAGCCCCTGTGAAGGAGAGTACGCTAAA
ATCTACTATTTATCTTCTAGATCGTTTTGATTTAAATTTCATCTTTTTTT
TTAAGCTTTTTGTTACTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00013254-exon-sc0000163-1575043694:284857..285554 | TCONS_00013254-exon-sc0000163-1575043694:284857..285554 | Clytia hemisphaerica | exon |
| TCONS_00013254-exon-sc0000163-1575043694:284686..284804 | TCONS_00013254-exon-sc0000163-1575043694:284686..284804 | Clytia hemisphaerica | exon |
| TCONS_00013254-exon-sc0000163-1510915933:284857..285554 | TCONS_00013254-exon-sc0000163-1510915933:284857..285554 | Clytia hemisphaerica | exon |
| TCONS_00013254-exon-sc0000163-1510915933:284686..284804 | TCONS_00013254-exon-sc0000163-1510915933:284686..284804 | Clytia hemisphaerica | exon |
| TCONS_00013254-exon-sc0000163-1491911889:284857..285554 | TCONS_00013254-exon-sc0000163-1491911889:284857..285554 | Clytia hemisphaerica | exon |
| TCONS_00013254-exon-sc0000163-1491911889:284686..284804 | TCONS_00013254-exon-sc0000163-1491911889:284686..284804 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000163 | supercontig | sc0000163:284686..285554 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR032628 | AC_N |
Blast
The following BLAST results are available for this feature:
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