TCONS_00013138 (transcript) - C. hemisphaerica

Overview
NameTCONS_00013138
Unique NameTCONS_00013138
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1455

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00013138 ID=TCONS_00013138|Name=TCONS_00013138|organism=Clytia hemisphaerica|type=transcript|length=1455bp
ATAACGTCATTATTTCATTCACACACCACCGCAGGGATTTATCTATTCAA
TAACCTCAATGAAAGTCAAAAACATATCAATTATGTAGGAGGGTTCTATG
TTGTGCAACTTTAAAAACATCGTTTTTATAGATGGAAAAATCTCCTTGGG
ATATTATTTGAAACAAATATTGAGAGAAAGACATCTTAGAAGAAATCAGG
AAAAGAATCAACGACAATGAGTGACTTTCCAACGTCCAAGAAAGTGTTAA
TCTTCGTCAACTTGGTGATCTACGTCATCCATCTCGTGCTCAATGGATTG
TCAGCAGCAGGTGGACCAGACAGCAAACTATTTCCAAACACTGTTGGTAA
CATCTCCAGGGCTTTCCATTTGGAACTAACTCCAGTCGGAGCAACATTCT
CAATCTGGGGTGCCATCTTTACATGGGAATTAATCTGGATCATCTACACA
TGTGCTACAGTATGCCGAAGTAATGCACCGTCAGCAAATATCTTGACTAC
ACGCTTCTACATTGCTTTCATTTTGAACATTCTCTTCATCTCGGCTTGGT
TATTCGTGTGGGCACGCGAGATGGCAATCGCTTCGCTGGTTGTCATCGTT
TTGGGTCAGATCTGTGTGGACACTGCCATCGCTTTTGCATTGATGGACTT
GAAAGCATTCTTAGATGACCAGAAAATCTTGAACAAGACAAAAGTTGATG
TTTGGTGCCAACGCATCTTGGTGCAGAACGGATTGATTTTTTACGCCACT
TGGACCACCGTCGCCTCTTTGATTAATGTCGCTGTTGTCGCCGCATACCG
TGGAAACGCCTCCACCTTGACTGCGTCCATCATCTCTATTAGTCTCCTGG
CAGCACTTGCGATTGTTTGGTTCCTCCTTGAGAACTTcgcttttcaaaaa
tacacaGAGTACACATTCAGTTCATACATCACTCTGATCATCGCAAACAT
CGGCGTCTACGCAGCCAACAACAAAGACGACGGTAATGAAACCATCAAAT
GGTTCTCCTTCGCCCTCATCATACTGTCTGCTATCTTCTTGGTGGTCCGT
ATCATCATCATTGCTGTCCGCCATAAACGCCAATCAAACACCATCGCTGG
TCGTGAACATAATGCCACCAACAGCACAAAAGTCCTTTACCAAAATTATT
AACTTAAACTTTCGAGGAACAAAATCTACAACTATCAAATATTAGATTTG
TAAAAGCGAAGAACTTTACAAACGCTAGTAAAAGGTAGAAATTGTATTCA
GATCGGAAAATAGCATCAAGTTTTTATACATTCTCATTTCAATAATCGTT
TATCTGTAAATAGCTTTTACTAGCCAGTTgttaatttatataaaaaatat
tttatccgATTTACATTTCAATAAAATATATgtcaaaaacattatcaagt
CTTTTCCATAAAAATTGATATTCTATACatagggcttttccagaaaatgt
ccgta
Run BLAST on NCBI

protein sequence of TCONS_00013138-protein

>TCONS_00013138-protein ID=TCONS_00013138-protein|Name=TCONS_00013138-protein|organism=Clytia hemisphaerica|type=polypeptide|length=311bp
MSDFPTSKKVLIFVNLVIYVIHLVLNGLSAAGGPDSKLFPNTVGNISRAF
HLELTPVGATFSIWGAIFTWELIWIIYTCATVCRSNAPSANILTTRFYIA
FILNILFISAWLFVWAREMAIASLVVIVLGQICVDTAIAFALMDLKAFLD
DQKILNKTKVDVWCQRILVQNGLIFYATWTTVASLINVAVVAAYRGNAST
LTASIISISLLAALAIVWFLLENFAFQKYTEYTFSSYITLIIANIGVYAA
NNKDDGNETIKWFSFALIILSAIFLVVRIIIIAVRHKRQSNTIAGREHNA
TNSTKVLYQNY
Run BLAST on NCBI

transcript from alignment at sc0000162:179497..181101-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00013138 ID=TCONS_00013138|Name=TCONS_00013138|organism=Clytia hemisphaerica|type=transcript|length=1605bp|location=Sequence derived from alignment at sc0000162:179497..181101- (Clytia hemisphaerica)
ATAACGTCATTATTTCATTCACACACCACCGCAGGGATTTATCTATTCAA
TAACCTCAATGAAAGTCAAAAACATATCAATTATGTAGGAGGGTTCTATG
TTGTGCAACTTTAAAAACATCGTTTTTATAGATGGAAAAATCTCCTTGGG
ATATTATTTGAAACAAATATTGAGAGAAAGACATCTTAGAAGAAATCAGG
TAAGAACAGAATAACATTTTTATTTTTTTATTTCTATCCCTTCTAGGGCT
TTTAGCCATCTAAACAATTTGCTAGAATCTAAACACATAGAAAACATTAT
CCCCGCTCAAATACAAGAGACTTTACAAATGTTTTGCTTTTATTTACAGG
AAAAGAATCAACGACAATGAGTGACTTTCCAACGTCCAAGAAAGTGTTAA
TCTTCGTCAACTTGGTGATCTACGTCATCCATCTCGTGCTCAATGGATTG
TCAGCAGCAGGTGGACCAGACAGCAAACTATTTCCAAACACTGTTGGTAA
CATCTCCAGGGCTTTCCATTTGGAACTAACTCCAGTCGGAGCAACATTCT
CAATCTGGGGTGCCATCTTTACATGGGAATTAATCTGGATCATCTACACA
TGTGCTACAGTATGCCGAAGTAATGCACCGTCAGCAAATATCTTGACTAC
ACGCTTCTACATTGCTTTCATTTTGAACATTCTCTTCATCTCGGCTTGGT
TATTCGTGTGGGCACGCGAGATGGCAATCGCTTCGCTGGTTGTCATCGTT
TTGGGTCAGATCTGTGTGGACACTGCCATCGCTTTTGCATTGATGGACTT
GAAAGCATTCTTAGATGACCAGAAAATCTTGAACAAGACAAAAGTTGATG
TTTGGTGCCAACGCATCTTGGTGCAGAACGGATTGATTTTTTACGCCACT
TGGACCACCGTCGCCTCTTTGATTAATGTCGCTGTTGTCGCCGCATACCG
TGGAAACGCCTCCACCTTGACTGCGTCCATCATCTCTATTAGTCTCCTGG
CAGCACTTGCGATTGTTTGGTTCCTCCTTGAGAACTTCGCTTTTCAAAAA
TACACAGAGTACACATTCAGTTCATACATCACTCTGATCATCGCAAACAT
CGGCGTCTACGCAGCCAACAACAAAGACGACGGTAATGAAACCATCAAAT
GGTTCTCCTTCGCCCTCATCATACTGTCTGCTATCTTCTTGGTGGTCCGT
ATCATCATCATTGCTGTCCGCCATAAACGCCAATCAAACACCATCGCTGG
TCGTGAACATAATGCCACCAACAGCACAAAAGTCCTTTACCAAAATTATT
AACTTAAACTTTCGAGGAACAAAATCTACAACTATCAAATATTAGATTTG
TAAAAGCGAAGAACTTTACAAACGCTAGTAAAAGGTAGAAATTGTATTCA
GATCGGAAAATAGCATCAAGTTTTTATACATTCTCATTTCAATAATCGTT
TATCTGTAAATAGCTTTTACTAGCCAGTTGTTAATTTATATAAAAAATAT
TTTATCCGATTTACATTTCAATAAAATATATGTCAAAAACATTATCAAGT
CTTTTCCATAAAAATTGATATTCTATACATAGGGCTTTTCCAGAAAATGT
CCGTA

Coding sequence (CDS) from alignment at sc0000162:179497..181101-

>TCONS_00013138 ID=TCONS_00013138|Name=TCONS_00013138|organism=Clytia hemisphaerica|type=CDS|length=936bp|location=Sequence derived from alignment at sc0000162:179497..181101- (Clytia hemisphaerica)
ATGAGTGACTTTCCAACGTCCAAGAAAGTGTTAATCTTCGTCAACTTGGT
GATCTACGTCATCCATCTCGTGCTCAATGGATTGTCAGCAGCAGGTGGAC
CAGACAGCAAACTATTTCCAAACACTGTTGGTAACATCTCCAGGGCTTTC
CATTTGGAACTAACTCCAGTCGGAGCAACATTCTCAATCTGGGGTGCCAT
CTTTACATGGGAATTAATCTGGATCATCTACACATGTGCTACAGTATGCC
GAAGTAATGCACCGTCAGCAAATATCTTGACTACACGCTTCTACATTGCT
TTCATTTTGAACATTCTCTTCATCTCGGCTTGGTTATTCGTGTGGGCACG
CGAGATGGCAATCGCTTCGCTGGTTGTCATCGTTTTGGGTCAGATCTGTG
TGGACACTGCCATCGCTTTTGCATTGATGGACTTGAAAGCATTCTTAGAT
GACCAGAAAATCTTGAACAAGACAAAAGTTGATGTTTGGTGCCAACGCAT
CTTGGTGCAGAACGGATTGATTTTTTACGCCACTTGGACCACCGTCGCCT
CTTTGATTAATGTCGCTGTTGTCGCCGCATACCGTGGAAACGCCTCCACC
TTGACTGCGTCCATCATCTCTATTAGTCTCCTGGCAGCACTTGCGATTGT
TTGGTTCCTCCTTGAGAACTTCGCTTTTCAAAAATACACAGAGTACACAT
TCAGTTCATACATCACTCTGATCATCGCAAACATCGGCGTCTACGCAGCC
AACAACAAAGACGACGGTAATGAAACCATCAAATGGTTCTCCTTCGCCCT
CATCATACTGTCTGCTATCTTCTTGGTGGTCCGTATCATCATCATTGCTG
TCCGCCATAAACGCCAATCAAACACCATCGCTGGTCGTGAACATAATGCC
ACCAACAGCACAAAAGTCCTTTACCAAAATTATTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007342XLOC_007342Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00013138-proteinTCONS_00013138-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00013138-exon-sc0000162-1575043694:180903..181101TCONS_00013138-exon-sc0000162-1575043694:180903..181101Clytia hemisphaericaexon
TCONS_00013138-exon-sc0000162-1575043694:179497..180752TCONS_00013138-exon-sc0000162-1575043694:179497..180752Clytia hemisphaericaexon
TCONS_00013138-exon-sc0000162-1510915933:180903..181101TCONS_00013138-exon-sc0000162-1510915933:180903..181101Clytia hemisphaericaexon
TCONS_00013138-exon-sc0000162-1510915933:179497..180752TCONS_00013138-exon-sc0000162-1510915933:179497..180752Clytia hemisphaericaexon
TCONS_00013138-exon-sc0000162-1491911889:180903..181101TCONS_00013138-exon-sc0000162-1491911889:180903..181101Clytia hemisphaericaexon
TCONS_00013138-exon-sc0000162-1491911889:179497..180752TCONS_00013138-exon-sc0000162-1491911889:179497..180752Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000162supercontigsc0000162:179497..181101 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.768779	0.583085	4.54569	5.33039	39.5114	26.9745	2.67231	3.70126	1.48762	4.81469	5.71176	7.45248	27.0605	32.5472	6.58041	138.39	16.4586	52.0984	5.4482	5.03601	43.8271	76.8215	12.0467	12.5847	5.07471	4.63819	18.1548	11.1668	83.7484	23.505
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00013138 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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