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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00013131 ID=TCONS_00013131|Name=TCONS_00013131|organism=Clytia hemisphaerica|type=transcript|length=2021bp
TTAGCACTCcgaaaacacacccttacagtgtatccagctaaaaggGTTGG
ACCATATATGGCTTCACAAAATAATTTGATTTACCTCCTATATGTATCAA
ATTGTCATTCCTTAGACAAAGCCAGTCAGTCAAGATCTGGATGTTTCAGC
TTTGTTGGAGAGTTTAGCATATCCTACACTGGCATCAAGTCTTCCAAAAC
AAGAATTAGAAGAGGAAGTGCAACCACCGACACTACCAAACACAACGGTC
AATAAACCTTCTGTGGTTGAACCTGAAGACAAACTCACCAAGATGAGAAG
AATCCTGTCAGAAGAATCCAATGATAAAAACAATGCAAATATTACTAACC
AAAAAGTTGTTTACCCCTCCCTTCCTAATGGAGACAGTAAAACGACACTA
ACACCCAGTACCAATACTGATCATAAAGAAACACCAGAGAAGGCAGTCAC
ACCAAATAAGCCAATTGAACCAAACAAACCTCTTGTTAATTTAGAACAAG
ATAATGATAAAAAAGAACCTCCTAAACCAGTTGTAAATAAAGCTATTGAA
GAGAcaaaaaattccataaaaaaagaTGATTTTGCTGAGCCGAATATTTC
TCATGATAAAGAGACTTTAATTACACCCAATAAAAAAGCTGGTAAACTTG
ACACGACACCGGGACTGCCAAACGGTTGGGTAAAAAAGGTTGATCAGAAC
TCAGGCAAAGTCTATTATATCGATCATAATACTAAAACCACTCATTGGGT
ACCTCCTGATTTGCAATCAAACAATGCTTCGAATAATTTAGTAAACAAAC
AATTGAATATGAAAACATTAGATCCAACCAACCAGAATTTGAAAGATTCA
TCGAACATTCCAAAAGCAACTTCAAATATCACCCCAACCACAATAGCGAC
ACCCAAAGCAGCACAAAATGCGCTCAGCAAGCCGCCTACACCACAGAATC
AAGCTTCAACAcaaccaaaaaaaacaactccAAAACCAGATCAGTCAAAT
ATGATTCCTCAAACAGCACAAAAGCCGCAAGTTCAACCACAGCAACCACC
ACAGAACACGCCACACCAACCTATACAAAAACAACCTTCACAATTGATCC
CACCACAACCATCTTCAAATATCACACAACAGCCTAAATCAACAATTAAT
ACATCTCAACTACCAGTTACTCCTCAACAACCAACGAAACCCATCTTAAA
GCAACACCCGCCGCCACCAGTCAACCNACCAGTTACTCTTCAACAACCAA
CGAAACCCATCTTAAAGCAACACCCGCCGCCACCAGTCAACCAAGCGGCA
ACACCTCAAAACCCGATGAAACCTAAACCGCCATCTCTCACTCAACCACC
AAAGGTTACACAGTCTCCATCCACACCTATAAACGTTCCTCAGGCACCAA
AGAACACTGTACCTGCAACTTCGCGCTATACAACAGATTCTCTGGACCTT
CCAAAACAACCTTCATTGAAACGTTCTTTATCCTCACCAAATCTAGCTGA
AAACTTGGCAAActtgaataaaaacaaaccaaaaacacCGATTGTTGATC
GAGGCTCTAAACCAAGCATTCCCAGTAGCAATACAAAACCAACTCATCTC
ATCGATCGTGCATCGAAACCCATTTCGGCTTCCAGATTGAGAAATCTTTC
CCCTGTGTATGGTAGCCAGgGTATGTCATTGactggtttgaaaaatcttg
gcAACACATGTTATATGAATTCAGTGCTTCAATGTTTAGTGAACACTCCT
CCTTTGGTTCGCTACTTCTCATCTGGGTTGTACGAAAAAGATTTAAATGC
AGAAAAAATCAATACAAATCCACTGAAAGGTGTCATCGCTCGTGAATTTG
CTTTCATCATGAAAGTTCTTGTGTCTGGCACCTATCGGTCCGTCTCCCCG
ATCGATTTCAAGTTAGCTTTGGGAGGTATTTCACGGCGATTCTTGACATA
TGAACAACAAGATTCGCATGAAGTCTTATTGATTGTTTTGGATGGACTTC
ACAATGATGTCAATAAGGTat Run BLAST on NCBI protein sequence of TCONS_00013131-protein >TCONS_00013131-protein ID=TCONS_00013131-protein|Name=TCONS_00013131-protein|organism=Clytia hemisphaerica|type=polypeptide|length=576bp
MRRILSEESNDKNNANITNQKVVYPSLPNGDSKTTLTPSTNTDHKETPEK
AVTPNKPIEPNKPLVNLEQDNDKKEPPKPVVNKAIEETKNSIKKDDFAEP
NISHDKETLITPNKKAGKLDTTPGLPNGWVKKVDQNSGKVYYIDHNTKTT
HWVPPDLQSNNASNNLVNKQLNMKTLDPTNQNLKDSSNIPKATSNITPTT
IATPKAAQNALSKPPTPQNQASTQPKKTTPKPDQSNMIPQTAQKPQVQPQ
QPPQNTPHQPIQKQPSQLIPPQPSSNITQQPKSTINTSQLPVTPQQPTKP
ILKQHPPPPVNXPVTLQQPTKPILKQHPPPPVNQAATPQNPMKPKPPSLT
QPPKVTQSPSTPINVPQAPKNTVPATSRYTTDSLDLPKQPSLKRSLSSPN
LAENLANLNKNKPKTPIVDRGSKPSIPSSNTKPTHLIDRASKPISASRLR
NLSPVYGSQGMSLTGLKNLGNTCYMNSVLQCLVNTPPLVRYFSSGLYEKD
LNAEKINTNPLKGVIAREFAFIMKVLVSGTYRSVSPIDFKLALGGISRRF
LTYEQQDSHEVLLIVLDGLHNDVNKV Run BLAST on NCBI transcript from alignment at sc0000162:7670..10424- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00013131 ID=TCONS_00013131|Name=TCONS_00013131|organism=Clytia hemisphaerica|type=transcript|length=2755bp|location=Sequence derived from alignment at sc0000162:7670..10424- (Clytia hemisphaerica)
TTAGCACTCCGAAAACACACCCTTACAGTGTATCCAGCTAAAAGGGTTGG
ACCATATATGGCTTCACAAAATAATTTGATTTACCTCCTATATGTATCAA
ATTGTCATTCCTTAGACAAAGCCAGTCAGTCAAGATCTGGATGTTTCAGC
TTTGTTGGAGAGTTTAGCATATCCTACACTGGCATCAAGTCTTCCAAAAC
AGTAAGATCTGATCACTTTAAAAATTCTTAATAGATTTTGATCAAAAATA
TTCATTACATATACATTCTTCTTTTTAGAAAGGGGTATTTTTAGAAAAAT
GAACACAATTTGTGGGTCACATTTATAATTAAAATTTTTGTTGAATTTTA
TGGTGTGATAGAGGTCTTGCTTGAAAATCTAGCTGATGGACAAGTTCCAT
TTGTTGATAAAAGTGAATATTGATTTAAGGGTTACACTTCGGATTTAAAC
ACTTTCAAATTAATTTAATAATTTCTTGAAGTTGTTTTTACTTTAGTTGT
TGGACTTTGCCTTAACTAATCTAAATAAGATCAAATGAGACTGTTTGTCA
CTAATTAAATTTTCGCTGTGCCTCTCCACTTCACAGAGAATTAGAAGAGG
AAGTGCAACCACCGACACTACCAAACACAACGGTCAATAAACCTTCTGTG
GTTGAACCTGAAGACAAACTCACCAAGATGAGAAGAATCCTGTCAGAAGA
ATCCAATGATAAAAACAATGCAAATATTACTAACCAAAAAGTTGTTTACC
CCTCCCTTCCTAATGGAGACAGTAAAACGACACTAACACCCAGTACCAAT
ACTGATCATAAAGAAACACCAGAGAAGGCAGTCACACCAAATAAGCCAAT
TGAACCAAACAAACCTCTTGTTAATTTAGAACAAGATAATGATAAAAAAG
AACCTCCTAAACCAGTTGTAAATAAAGCTATTGAAGAGACAAAAAATTCC
ATAAAAAAAGATGATTTTGCTGAGCCGAATATTTCTCATGATAAAGAGAC
TTTAATTACACCCAATAAAAAAGCTGGTAAACTTGACACGACACCGGGAC
TGCCAAACGGTTGGGTAAAAAAGGTTGATCAGAACTCAGGCAAAGTCTAT
TATATCGATCATAATACTAAAACCACTCATTGGGTACCTCCTGATTTGCA
ATCAAACAATGCTTCGAATAATTTAGTAAACAAACAATTGAATATGAAAA
CATTAGATCCAACCAACCAGAATTTGAAAGATTCATCGAACATTCCAAAA
GCAACTTCAAATATCACCCCAACCACAATAGCGACACCCAAAGCAGCACA
AAATGCGCTCAGCAAGCCGCCTACACCACAGAATCAAGCTTCAACACAAC
CAAAAAAAACAACTCCAAAACCAGATCAGTCAAATATGATTCCTCAAACA
GCACAAAAGCCGCAAGTTCAACCACAGCAACCACCACAGAACACGCCACA
CCAACCTATACAAAAACAACCTTCACAATTGATCCCACCACAACCATCTT
CAAATATCACACAACAGCCTAAATCAACAATTAATACATCTCAACTACCA
GTTACTCCTCAACAACCAACGAAACCCATCTTAAAGCAACACCCGCCGCC
ACCAGTCAACCNACCAGTTACTCTTCAACAACCAACGAAACCCATCTTAA
AGCAACACCCGCCGCCACCAGTCAACCAAGCGGCAACACCTCAAAACCCG
ATGAAACCTAAACCGCCATCTCTCACTCAACCACCAAAGGTTACACAGTC
TCCATCCACACCTATAAACGTTCCTCAGGCACCAAAGAACACTGTACCTG
CAACTTCGCGCTATACAACAGATTCTCTGGACCTTCCAAAACAACCTTCA
TTGAAACGTTCTTTATCCTCACCAAATCTAGCTGAAAACTTGGCAAACTT
GAATAAAAACAAACCAAAAACACCGATTGTTGATCGAGGCTCTAAACCAA
GGTATTAAAATTATCTTCTCTGATTTATGTCATAAACATTTAACATTTAT
AATTTAGTTGATTTTATTAATTTCTTGCATTGAAATAATTACAATTCTCG
TATTTTTCCACAGCATTCCCAGTAGCAATACAAAACCAACTCATCTCATC
GATCGTGCATCGAAACCCATTTCGGCTTCCAGATTGAGAAATCTTTCCCC
TGTGTATGGTAGCCAGGTATTGTTTTCTTATTGTTTTAAGTTGTTTGATC
TTTCCAAAAGTTTCTCATCTCTTGTGGGGAATTTCTAGAATCTTATGCTT
GGAGTTTTTGGTTTATACAAAACTCGACAAACGTCATTTTTGTTGTTCTA
TGGTGATATGGCTCTACTCTAAAACAATCTTATCCCCCAAGGAATTATCT
TTTTTGTCAGGTAGTGGTCACATTTCAAATATTTTGTTTTACATTTTTTT
CAGGGTATGTCATTGACTGGTTTGAAAAATCTTGGCAACACATGTTATAT
GAATTCAGTGCTTCAATGTTTAGTGAACACTCCTCCTTTGGTTCGCTACT
TCTCATCTGGGTTGTACGAAAAAGATTTAAATGCAGAAAAAATCAATACA
AATCCACTGAAAGGTGTCATCGCTCGTGAATTTGCTTTCATCATGAAAGT
TCTTGTGTCTGGCACCTATCGGTCCGTCTCCCCGATCGATTTCAAGTTAG
CTTTGGGAGGTATTTCACGGCGATTCTTGACATATGAACAACAAGATTCG
CATGAAGTCTTATTGATTGTTTTGGATGGACTTCACAATGATGTCAATAA
GGTAT Coding sequence (CDS) from alignment at sc0000162:7670..10424- >TCONS_00013131 ID=TCONS_00013131|Name=TCONS_00013131|organism=Clytia hemisphaerica|type=CDS|length=5184bp|location=Sequence derived from alignment at sc0000162:7670..10424- (Clytia hemisphaerica)
GGTATGTCATTGACTGGTTTGAAAAATCTTGGCAACACATGTTATATGAA
TTCAGTGCTTCAATGTTTAGTGAACACTCCTCCTTTGGTTCGCTACTTCT
CATCTGGGTTGTACGAAAAAGATTTAAATGCAGAAAAAATCAATACAAAT
CCACTGAAAGGTGTCATCGCTCGTGAATTTGCTTTCATCATGAAAGTTCT
TGTGTCTGGCACCTATCGGTCCGTCTCCCCGATCGATTTCAAGTTAGCTT
TGGGAGGTATTTCACGGCGATTCTTGACATATGAACAACAAGATTCGCAT
GAAGTCTTATTGATTGTTTTGGATGGACTTCACAATGATGTCAATAAGGT
ACATTCCCAGTAGCAATACAAAACCAACTCATCTCATCGATCGTGCATCG
AAACCCATTTCGGCTTCCAGATTGAGAAATCTTTCCCCTGTGTATGGTAG
CCAGATGAGAAGAATCCTGTCAGAAGAATCCAATGATAAAAACAATGCAA
ATATTACTAACCAAAAAGTTGTTTACCCCTCCCTTCCTAATGGAGACAGT
AAAACGACACTAACACCCAGTACCAATACTGATCATAAAGAAACACCAGA
GAAGGCAGTCACACCAAATAAGCCAATTGAACCAAACAAACCTCTTGTTA
ATTTAGAACAAGATAATGATAAAAAAGAACCTCCTAAACCAGTTGTAAAT
AAAGCTATTGAAGAGACAAAAAATTCCATAAAAAAAGATGATTTTGCTGA
GCCGAATATTTCTCATGATAAAGAGACTTTAATTACACCCAATAAAAAAG
CTGGTAAACTTGACACGACACCGGGACTGCCAAACGGTTGGGTAAAAAAG
GTTGATCAGAACTCAGGCAAAGTCTATTATATCGATCATAATACTAAAAC
CACTCATTGGGTACCTCCTGATTTGCAATCAAACAATGCTTCGAATAATT
TAGTAAACAAACAATTGAATATGAAAACATTAGATCCAACCAACCAGAAT
TTGAAAGATTCATCGAACATTCCAAAAGCAACTTCAAATATCACCCCAAC
CACAATAGCGACACCCAAAGCAGCACAAAATGCGCTCAGCAAGCCGCCTA
CACCACAGAATCAAGCTTCAACACAACCAAAAAAAACAACTCCAAAACCA
GATCAGTCAAATATGATTCCTCAAACAGCACAAAAGCCGCAAGTTCAACC
ACAGCAACCACCACAGAACACGCCACACCAACCTATACAAAAACAACCTT
CACAATTGATCCCACCACAACCATCTTCAAATATCACACAACAGCCTAAA
TCAACAATTAATACATCTCAACTACCAGTTACTCCTCAACAACCAACGAA
ACCCATCTTAAAGCAACACCCGCCGCCACCAGTCAACCNACCAGTTACTC
TTCAACAACCAACGAAACCCATCTTAAAGCAACACCCGCCGCCACCAGTC
AACCAAGCGGCAACACCTCAAAACCCGATGAAACCTAAACCGCCATCTCT
CACTCAACCACCAAAGGTTACACAGTCTCCATCCACACCTATAAACGTTC
CTCAGGCACCAAAGAACACTGTACCTGCAACTTCGCGCTATACAACAGAT
TCTCTGGACCTTCCAAAACAACCTTCATTGAAACGTTCTTTATCCTCACC
AAATCTAGCTGAAAACTTGGCAAACTTGAATAAAAACAAACCAAAAACAC
CGATTGTTGATCGAGGCTCTAAACCAAGGGTATGTCATTGACTGGTTTGA
AAAATCTTGGCAACACATGTTATATGAATTCAGTGCTTCAATGTTTAGTG
AACACTCCTCCTTTGGTTCGCTACTTCTCATCTGGGTTGTACGAAAAAGA
TTTAAATGCAGAAAAAATCAATACAAATCCACTGAAAGGTGTCATCGCTC
GTGAATTTGCTTTCATCATGAAAGTTCTTGTGTCTGGCACCTATCGGTCC
GTCTCCCCGATCGATTTCAAGTTAGCTTTGGGAGGTATTTCACGGCGATT
CTTGACATATGAACAACAAGATTCGCATGAAGTCTTATTGATTGTTTTGG
ATGGACTTCACAATGATGTCAATAAGGTACATTCCCAGTAGCAATACAAA
ACCAACTCATCTCATCGATCGTGCATCGAAACCCATTTCGGCTTCCAGAT
TGAGAAATCTTTCCCCTGTGTATGGTAGCCAGATGAGAAGAATCCTGTCA
GAAGAATCCAATGATAAAAACAATGCAAATATTACTAACCAAAAAGTTGT
TTACCCCTCCCTTCCTAATGGAGACAGTAAAACGACACTAACACCCAGTA
CCAATACTGATCATAAAGAAACACCAGAGAAGGCAGTCACACCAAATAAG
CCAATTGAACCAAACAAACCTCTTGTTAATTTAGAACAAGATAATGATAA
AAAAGAACCTCCTAAACCAGTTGTAAATAAAGCTATTGAAGAGACAAAAA
ATTCCATAAAAAAAGATGATTTTGCTGAGCCGAATATTTCTCATGATAAA
GAGACTTTAATTACACCCAATAAAAAAGCTGGTAAACTTGACACGACACC
GGGACTGCCAAACGGTTGGGTAAAAAAGGTTGATCAGAACTCAGGCAAAG
TCTATTATATCGATCATAATACTAAAACCACTCATTGGGTACCTCCTGAT
TTGCAATCAAACAATGCTTCGAATAATTTAGTAAACAAACAATTGAATAT
GAAAACATTAGATCCAACCAACCAGAATTTGAAAGATTCATCGAACATTC
CAAAAGCAACTTCAAATATCACCCCAACCACAATAGCGACACCCAAAGCA
GCACAAAATGCGCTCAGCAAGCCGCCTACACCACAGAATCAAGCTTCAAC
ACAACCAAAAAAAACAACTCCAAAACCAGATCAGTCAAATATGATTCCTC
AAACAGCACAAAAGCCGCAAGTTCAACCACAGCAACCACCACAGAACACG
CCACACCAACCTATACAAAAACAACCTTCACAATTGATCCCACCACAACC
ATCTTCAAATATCACACAACAGCCTAAATCAACAATTAATACATCTCAAC
TACCAGTTACTCCTCAACAACCAACGAAACCCATCTTAAAGCAACACCCG
CCGCCACCAGTCAACCNACCAGTTACTCTTCAACAACCAACGAAACCCAT
CTTAAAGCAACACCCGCCGCCACCAGTCAACCAAGCGGCAACACCTCAAA
ACCCGATGAAACCTAAACCGCCATCTCTCACTCAACCACCAAAGGTTACA
CAGTCTCCATCCACACCTATAAACGTTCCTCAGGCACCAAAGAACACTGT
ACCTGCAACTTCGCGCTATACAACAGATTCTCTGGACCTTCCAAAACAAC
CTTCATTGAAACGTTCTTTATCCTCACCAAATCTAGCTGAAAACTTGGCA
AACTTGAATAAAAACAAACCAAAAACACCGATTGTTGATCGAGGCTCTAA
ACCAAGGGTATGTCATTGACTGGTTTGAAAAATCTTGGCAACACATGTTA
TATGAATTCAGTGCTTCAATGTTTAGTGAACACTCCTCCTTTGGTTCGCT
ACTTCTCATCTGGGTTGTACGAAAAAGATTTAAATGCAGAAAAAATCAAT
ACAAATCCACTGAAAGGTGTCATCGCTCGTGAATTTGCTTTCATCATGAA
AGTTCTTGTGTCTGGCACCTATCGGTCCGTCTCCCCGATCGATTTCAAGT
TAGCTTTGGGAGGTATTTCACGGCGATTCTTGACATATGAACAACAAGAT
TCGCATGAAGTCTTATTGATTGTTTTGGATGGACTTCACAATGATGTCAA
TAAGGTACATTCCCAGTAGCAATACAAAACCAACTCATCTCATCGATCGT
GCATCGAAACCCATTTCGGCTTCCAGATTGAGAAATCTTTCCCCTGTGTA
TGGTAGCCAGATGAGAAGAATCCTGTCAGAAGAATCCAATGATAAAAACA
ATGCAAATATTACTAACCAAAAAGTTGTTTACCCCTCCCTTCCTAATGGA
GACAGTAAAACGACACTAACACCCAGTACCAATACTGATCATAAAGAAAC
ACCAGAGAAGGCAGTCACACCAAATAAGCCAATTGAACCAAACAAACCTC
TTGTTAATTTAGAACAAGATAATGATAAAAAAGAACCTCCTAAACCAGTT
GTAAATAAAGCTATTGAAGAGACAAAAAATTCCATAAAAAAAGATGATTT
TGCTGAGCCGAATATTTCTCATGATAAAGAGACTTTAATTACACCCAATA
AAAAAGCTGGTAAACTTGACACGACACCGGGACTGCCAAACGGTTGGGTA
AAAAAGGTTGATCAGAACTCAGGCAAAGTCTATTATATCGATCATAATAC
TAAAACCACTCATTGGGTACCTCCTGATTTGCAATCAAACAATGCTTCGA
ATAATTTAGTAAACAAACAATTGAATATGAAAACATTAGATCCAACCAAC
CAGAATTTGAAAGATTCATCGAACATTCCAAAAGCAACTTCAAATATCAC
CCCAACCACAATAGCGACACCCAAAGCAGCACAAAATGCGCTCAGCAAGC
CGCCTACACCACAGAATCAAGCTTCAACACAACCAAAAAAAACAACTCCA
AAACCAGATCAGTCAAATATGATTCCTCAAACAGCACAAAAGCCGCAAGT
TCAACCACAGCAACCACCACAGAACACGCCACACCAACCTATACAAAAAC
AACCTTCACAATTGATCCCACCACAACCATCTTCAAATATCACACAACAG
CCTAAATCAACAATTAATACATCTCAACTACCAGTTACTCCTCAACAACC
AACGAAACCCATCTTAAAGCAACACCCGCCGCCACCAGTCAACCNACCAG
TTACTCTTCAACAACCAACGAAACCCATCTTAAAGCAACACCCGCCGCCA
CCAGTCAACCAAGCGGCAACACCTCAAAACCCGATGAAACCTAAACCGCC
ATCTCTCACTCAACCACCAAAGGTTACACAGTCTCCATCCACACCTATAA
ACGTTCCTCAGGCACCAAAGAACACTGTACCTGCAACTTCGCGCTATACA
ACAGATTCTCTGGACCTTCCAAAACAACCTTCATTGAAACGTTCTTTATC
CTCACCAAATCTAGCTGAAAACTTGGCAAACTTGAATAAAAACAAACCAA
AAACACCGATTGTTGATCGAGGCTCTAAACCAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00013131-exon-sc0000162-1575043694:10224..10424 | TCONS_00013131-exon-sc0000162-1575043694:10224..10424 | Clytia hemisphaerica | exon |
| TCONS_00013131-exon-sc0000162-1575043694:8474..9838 | TCONS_00013131-exon-sc0000162-1575043694:8474..9838 | Clytia hemisphaerica | exon |
| TCONS_00013131-exon-sc0000162-1575043694:8259..8361 | TCONS_00013131-exon-sc0000162-1575043694:8259..8361 | Clytia hemisphaerica | exon |
| TCONS_00013131-exon-sc0000162-1575043694:7670..8021 | TCONS_00013131-exon-sc0000162-1575043694:7670..8021 | Clytia hemisphaerica | exon |
| TCONS_00013131-exon-sc0000162-1510915933:10224..10424 | TCONS_00013131-exon-sc0000162-1510915933:10224..10424 | Clytia hemisphaerica | exon |
| TCONS_00013131-exon-sc0000162-1510915933:8474..9838 | TCONS_00013131-exon-sc0000162-1510915933:8474..9838 | Clytia hemisphaerica | exon |
| TCONS_00013131-exon-sc0000162-1510915933:8259..8361 | TCONS_00013131-exon-sc0000162-1510915933:8259..8361 | Clytia hemisphaerica | exon |
| TCONS_00013131-exon-sc0000162-1510915933:7670..8021 | TCONS_00013131-exon-sc0000162-1510915933:7670..8021 | Clytia hemisphaerica | exon |
| TCONS_00013131-exon-sc0000162-1491911889:10224..10424 | TCONS_00013131-exon-sc0000162-1491911889:10224..10424 | Clytia hemisphaerica | exon |
| TCONS_00013131-exon-sc0000162-1491911889:8474..9838 | TCONS_00013131-exon-sc0000162-1491911889:8474..9838 | Clytia hemisphaerica | exon |
| TCONS_00013131-exon-sc0000162-1491911889:8259..8361 | TCONS_00013131-exon-sc0000162-1491911889:8259..8361 | Clytia hemisphaerica | exon |
| TCONS_00013131-exon-sc0000162-1491911889:7670..8021 | TCONS_00013131-exon-sc0000162-1491911889:7670..8021 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000162 | supercontig | sc0000162:7670..10424 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005515 | protein binding |
| GO:0036459 | thiol-dependent ubiquitinyl hydrolase activity |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0016579 | protein deubiquitination |
| GO:0006511 | ubiquitin-dependent protein catabolic process |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0016579 |
protein deubiquitination |
| biological_process |
GO:0006511 |
ubiquitin-dependent protein catabolic process |
| molecular_function |
GO:0005515 |
protein binding |
| molecular_function |
GO:0036459 |
thiol-dependent ubiquitinyl hydrolase activity |
Blast
BLAST of TCONS_00013131 vs. Swiss-Prot (Human)
Match: UBP8 (Ubiquitin carboxyl-terminal hydrolase 8 OS=Homo sapiens GN=USP8 PE=1 SV=1) HSP 1 Score: 167.548 bits (423), Expect = 4.594e-43 Identity = 81/162 (50.00%), Postives = 107/162 (66.05%), Query Frame = 2
Query: 1535 TPIVDRGSKPSIPSSNTKPTHLIDRASKPISASRLRNLSPVYGSQGMSLTGLKNLGNTCYMNSVLQCLVNTPPLVRYFSSGLYEKDLNAEKINTNPLKGVIAREFAFIMKVLVSGTYRSVSPIDFKLALGGISRRFLTYEQQDSHEVLLIVLDGLHNDVNKV 2020
TP V+R +KP+ P I R +SAS++RNL+PV+G G +LTGL+NLGNTCYMNS+LQCL N P L YF+ Y+ D+N + N KG +A EF IMK L +G YR +SP DFK+ +G I+ +F Y QQDS E+LL ++DGLH D+NK
Sbjct: 737 TPTVNRENKPTCY-----PKAEISR----LSASQIRNLNPVFGGSGPALTGLRNLGNTCYMNSILQCLCNAPHLADYFNRNCYQDDIN--RSNLLGHKGEVAEEFGIIMKALWTGQYRYISPKDFKITIGKINDQFAGYSQQDSQELLLFLMDGLHEDLNKA 887
The following BLAST results are available for this feature:
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