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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00013130 ID=TCONS_00013130|Name=TCONS_00013130|organism=Clytia hemisphaerica|type=transcript|length=3439bpRun BLAST on NCBI protein sequence of TCONS_00013130-protein >TCONS_00013130-protein ID=TCONS_00013130-protein|Name=TCONS_00013130-protein|organism=Clytia hemisphaerica|type=polypeptide|length=989bp MAVGNGQVEPADKRRDVINGVVEDEKKPAMEALVILREHEDQSDNESESSRun BLAST on NCBI transcript from alignment at sc0000162:433360..448296+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00013130 ID=TCONS_00013130|Name=TCONS_00013130|organism=Clytia hemisphaerica|type=transcript|length=14937bp|location=Sequence derived from alignment at sc0000162:433360..448296+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000162:433360..448296+ >TCONS_00013130 ID=TCONS_00013130|Name=TCONS_00013130|organism=Clytia hemisphaerica|type=CDS|length=80190bp|location=Sequence derived from alignment at sc0000162:433360..448296+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00013130 vs. Swiss-Prot (Human)
Match: PLD2 (Phospholipase D2 OS=Homo sapiens GN=PLD2 PE=1 SV=2) HSP 1 Score: 644.81 bits (1662), Expect = 0.000e+0 Identity = 381/939 (40.58%), Postives = 527/939 (56.12%), Query Frame = 2
Query: 419 KDIEDYGDVKIPFSHTFKSGKIEENFLV---GVPVRIRI--NERVVSYGAYRHRLNPNLYTVEFVHGRFKWTIKKRYNHFRRLRNHLEVYHAALIVKHPTMAIRL----------EKVPKLPXXXXXXXXXXXXXXXXXXXXXXFLQKVVNIDRYRNNEHVLDFLEVSHLSFVHDLGAKHKEQEVLKRAGGHTFS--KSFLKNHIIWIWHKRWLILRNSFVAYIDKENNRIRDVLLFDNKFNVSCDKTRTGIKNGIMVSNNRRDLVVRFQSDAQARSYFGNIINVMGKEGRDWIREHRHDSFAPIRNNTHIKWFVDGEGYFAAVADAIRKAKEEIFITDWWLSPELVLKRPITDVKAWRLDTLLKEKADQGVKIFIILYKELEVALPINSLYSKRALTSLHPENIKVLRHPDHQPTSDNPVWYWAHHEKLVCIDQKLTFMGGFDLCFGRWDDHTHRLVDFGSATPNFLDQTSQAVVNISNLFLETDVIDSEYHKQQLRKLPQTAKKWFIGKDYCNFYIQDVTEVEKPLIDLLDRNENPRMPWHDIACAMYGDAARDIGRHFIERWNFTKHLKCKDMHEI-PYLLPRCEPILEQGYQDFHISTVANVQVLRSSGAWSAGLLSTEHSILNAYKHHIRNAKYYIYIENQFFITCKSD-NVKNTIGDLLVERILLAHHNKETFRVYVVMPLLPSFAGEIGTSAATS----LHFIEYWNLQSARNIINTLQENGVEDPTEYITFNSLRNYADLRHKMVTEILYVHSKLMIIDDEVVIMGSANINDRSMLGDRDSELAVCVQDENKTLPGVMNGVEYRVGGFASTLRRKLFQEHLGLLNEPYYTVVDPVSQHFFKDVWCQRARKNTEILHEVFGRMPNNEVKSFADLEEYKKREFLETKDPVEARKLLKGVQGFLVEKPLDFLKDQDLFPPADSKEFVAPYKIFT 3166
K+ ED D PF ++ ++ + LV GVPV ++ ER S LY+V HG F WT KK+Y HF+ L L + H L+ P + ++P LPR + ++ + +L +++ + YRN + +FLEVS LSF+ DLG K E + KR+GGH ++ + + W KRWL++++SF+ Y+ E I V LFD F V K T ++G+ + + R L+++ S QAR + I + GRD+++ HRHDS+AP R T +WFV+G GYFAAVADAI +A+EEIFITDWWLSPE+ LKRP WRLD +LK KA++GV++ I+L+KE+E+AL INS YSKRAL LHP NIKV+RHPD V WAHHEKL+ +DQ + F+GG DL +GRWDD +RL D G D + A ++ H Q +++GKDY N +D ++++P D +DR PRMPW D+ ++G ARD+ RHFI+RWNFTK K K PYLLP+ Q VQVLRS WSAG L E+SILNAY H IR +++++YIENQFFI+C V N +GD +V+RIL AH +RVYV++PLLP F G+I T S LHF + +I++ L+ +YI+ LR + +L V+E++Y+HSK++I DD VI+GSANINDRS+LG RDSELAV ++D +T P +MNG EY+ G FA +LR+ F LG P + DP+ FF+ +W A N I ++F +P+N +S L EY E L T P AR L VQG LV PL FL+D+ L PP SKE + P +++T
Sbjct: 31 KEGEDPADRMHPFLAIYELQSLKVHPLVFAPGVPVTAQVVGTERYTSGSKVG---TCTLYSVRLTHGDFSWTTKKKYRHFQELHRDL-LRHKVLMSLLPLARFAVAYSPARDAGNREMPSLPRAGPEGSTRHAASKQKYLEN--YLNRLLTMSFYRNYHAMTEFLEVSQLSFIPDLGRKGLEGMIRKRSGGHRVPGLTCCGRDQVCYRWSKRWLVVKDSFLLYMCLETGAISFVQLFDPGFEVQVGKRSTEARHGVRIDTSHRSLILKCSSYRQARWWAQEITELAQGPGRDFLQLHRHDSYAPPRPGTLARWFVNGAGYFAAVADAILRAQEEIFITDWWLSPEVYLKRP-AHSDDWRLDIMLKRKAEEGVRVSILLFKEVELALGINSGYSKRALMLLHP-NIKVMRHPDQ-------VTLWAHHEKLLVVDQVVAFLGGLDLAYGRWDDLHYRLTDLG-------DSSESAASQPPTPRPDSPATPDLSHNQ----------FFWLGKDYSNLITKDWVQLDRPFEDFIDRETTPRMPWRDVGVVVHGLPARDLARHFIQRWNFTKTTKAKYKTPTYPYLLPKSTSTANQLPFTLPGGQCTTVQVLRSVDRWSAGTL--ENSILNAYLHTIRESQHFLYIENQFFISCSDGRTVLNKVGDEIVDRILKAHKQGWCYRVYVLLPLLPGFEGDISTGGGNSIQAILHFTYRTLCRGEYSILHRLKAAMGTAWRDYISICGLRTHGELGGHPVSELIYIHSKVLIADDRTVIIGSANINDRSLLGKRDSELAVLIED-TETEPSLMNGAEYQAGRFALSLRKHCFGVILGANTRPDLDLRDPICDDFFQ-LWQDMAESNANIYEQIFRCLPSNATRSLRTLREYVAVEPLATVSPPLARSELTQVQGHLVHFPLKFLEDESLLPPLGSKEGMIPLEVWT 933 The following BLAST results are available for this feature:
BLAST of TCONS_00013130 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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