TCONS_00013100 (transcript) - C. hemisphaerica

Overview
NameTCONS_00013100
Unique NameTCONS_00013100
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2707

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00013100 ID=TCONS_00013100|Name=TCONS_00013100|organism=Clytia hemisphaerica|type=transcript|length=2707bp
CTGAAAACTGCAACAGAGGGGAGAGTCATACACGCAGCAAAATGAGGAAT
AGCAAGATTTTCAAAGAGATTGTGAGCCTTCTATACTGGACCATGTTGGC
GGCTTGTACAGTGGGGCCCGGAACCGTAGTCACTTGCGCAAGGGCCGGTG
CTGAATTTGATTTGAACTTGATTTGGGCGTTGATTTTCGCTTCCATTCTC
TCATATACTTTGCAGGAAGGTACAGCAAGACTGACAATAAAAAGTGGTAA
AAGCCTTGGTCAATGTCTTCAAGCAAAATATAAACATGGTCGACTGATAT
GGGGCGTGGGCGTTATTTGCTGGGTGGTGGCGGTCTGTGTATTTCTTGGA
AACACTTTTTATTCATGCAACAACTGGGCAGGTGGCATGTCCGCCATCTA
CGCACTACCCGGTGCTGGAAATACGGTCGGACTACGTGTTGGTGCTTGTT
TTGGGTATGGTTTCATTGTCATCGCAATTTCATTGGCTGATAAAACGGAT
TCACTTGGAGTAGGACTTGGTGTAGTTATGATTGCCATGGTGATATTATT
CCTGGTAGTTGTCGTTAAACTAGGTTTAGATGGTGCACGATTCGCTAAAG
GATTGCTGCCGATCAGTATGCCAGCAGGATCCACCAACATTGTTTTAAGC
TTGGTAGGAACAACTGCTATCGGCTTCAACCTATTCTTAGGTGGACAGAT
GGCAGAAGGGAAAACGCTTCCACAAGCACAAAGAGGGATTGCATTTTCAA
CAGTAATGACTCTGATTGTGTCAGTCTTAATCATGATTGTTGGAGATGGT
ACAGAGTTACAGAAAGGGTTATTCACCATCGCCAACTTGTCTGGTACTGT
AGAAAATCTGACTGGAGGTGCTGGTCTTTGGATATTTTGTCTGGGCTTCA
TTGCAGCCGCTTTAAGTTCCATGTTAGTGTGCCCGTTAGGATCAGTGATG
ACTTGTGAAAGCGTTTTCAATATTTATGCGGAAAATGACGAGCAGTCGGC
AATGGAGTATAAGAGCACTGGAGAGAAGGAACAGGATCAAGGTACAAAAG
AAGGGGAGCAAGTTATTCAAATCCAAAGTGAAGGCCAAGAAAGATTGTTT
CCCAAGAAATATGCACGTGCTTTGATGGTCATAATGGTATCCGTAGCTGT
GATTGTGAACGCTGCAAATGCACCACCTGTTAAAGTCATCTTGGTCGCTC
AAGTGTTCAATGGTTGTCTTCTCCCCTTCTTTTCTATCTGTCTATTGATC
TGTTTGAACGATCCACAATTTATGGCATCTGCTCCACAAAAAGGATGGTC
CAATTGCTTCCTCACTACTGCTGTCATTATAACTTTGTTCCTGACCGCAA
ATTCCATGATTCAAAACCTCTTCGGATGGACTACAACTAATGGTCATATC
TTGAAATCCACATTTGACACCatcaaatttagtttttctggAGTGATTGC
GGTGGCGATTAtgctttgtttgtttttgtgtacTAGTCTAGGAAAGAATG
TTTGCAAAAGTTTAAATTGCTTTAATCGTGTAGAAGACCTAAGAACATAA
AAGATGATGATGGTGAATTTTATTAGTAACACTATAGAACCCCCTCTAAT
ATATCTATACATGACAAAAGAAATACAAATTATCCTCGACTCTGGTAGTC
ATTAAAACCTACAATGGCGCAAAGAGCGACAAATACCACGAGCGAAAAAC
CCACGTGTCCGGAAAAAGTAGAACAGATTTTATTTAAAGTATAATCATCA
GAACTCATTATTTTACTTGAATTCAGAACAATTGAACTAATGGTATGGAA
TTTCTTTGTCGAATCGATAAATACTAAAagtatttttgtttacttaaatT
TTGTTCCAATATTTCCCCTAACCCTATAGACACACAAAGATagaatttta
agaaagaaatccttaatttttaaaattgcattttcgattttcatttttaa
gctCAATGGCCTATACTTTAGACGTAAACAATAAGAGTCATAGGAAAAAT
ATCTAGCTCATTCATAAATTCTCTagataaatacaaaaatatacaaaaaa
caaatataaacctTCCTTTTTGATGACCATCCCACCCTTTTTTCGGGAAA
TGTACGTACCCTAGTAAAACATTTTTCAGCGCTGGCATTTAGTTAAATTT
TCAGTGAAATAAGTCTTTTGAGAGTCTTTTAATGGCCAATANcaaattta
gtttttctggAGTGATTGCGGTGGCGATTAtgctttgtttgtttttgtgt
acTAGTCTAGGAAAGAATGTTTGCAAAAGTTTAAATTGCTTTAATCGTGT
AGAAGACCTAAGAACATAAAAGATGATGATGGTGAATTTTATTAGTAACA
CTATAGAACCCCCTTTAATGTATCTATACATGACAAAAGAAATACAAATT
ATCCTCGACTCTGGTAGTCATTAAAACCTACAATGGCGCGAAGAGCGACA
AATACCACGAGCGAAAAACCCACGTGTCCGGAAAAAGTAGAACAGATTTT
ATTTAAAGTATAATCATCAGAACTCATTATTTTACTTGAATTCAGAACAA
TTGAACTAATGGTATGGAATTTCTTTGTCGAATCGATAAATACTAAAagt
atttttgtttacttaaatTTTGTTCCAATATTTCCCCTAACCCTATAGAC
ACACAAAGATagaattttaagaaagaaatccttaatttttaaaattgcat
tttcgat
Run BLAST on NCBI

transcript from alignment at sc0000162:266509..270834+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00013100 ID=TCONS_00013100|Name=TCONS_00013100|organism=Clytia hemisphaerica|type=transcript|length=4326bp|location=Sequence derived from alignment at sc0000162:266509..270834+ (Clytia hemisphaerica)
CTGAAAACTGCAACAGAGGGGAGAGTCATACACGCAGCAAAATGAGGAAT
AGCAAGATTTTCAAAGAGATTGTGAGCCTTCTATACTGGACCATGTTGGC
GGCTTGTACAGTGGGGCCCGGAACCGTAGTCACTTGCGCAAGGGCCGGTG
CTGAATTTGATTTGAACTTGATTTGGGCGTTGATTTTCGCTTCCATTCTC
TCATATACTTTGCAGGAAGGTAAAGAATTTGAGCATGGACAAAAATGATA
AACGTTATTTAACCTAAACACGTTTCTTTTACATCATCTATTCTATTCAA
TTTAGGGTGGAGTAATAACCATGCCAACCTCTTAGCTTTCGTTACACTCG
GAACATTGACAAGTTACTTGTTAACTTTGCTAACTTTTATCTGTACGTAA
TATCATTATCCACCTTTAGGTACAGCAAGACTGACAATAAAAAGTGGTAA
AAGCCTTGGTCAATGTCTTCAAGCAAAATATAAACATGGTCGACTGATAT
GGGGCGTGGGCGTTATTTGCTGGGTGGTGGCGGTCTGTGTATTTCTTGGT
AAGTTGCCTCAAAAAATGTTTAGCCACCTCGGTTTAAAGCtcattcgatt
gacaaaaagGCAAAAAGTCATTGCACTATTTCAATTATttatttcaattc
atttttcTCCAGTTCCCGATTTGTTCTGTTCTTGTTCAATTCCTCAGCCT
GTCTAAAAGCTGCTGATTTTCTTTTCCTTCATACTATAGGAAACACTTTT
TATTCATGCAACAACTGGGCAGGTGGCATGTCCGCCATCTACGCACTACC
CGGTGCTGGAAATACGGTCGGACTACGTGTTGGTGCTTGTTTTGGGTATG
GTTTCATTGTCATCGCAATTTCATTGGCTGATAAAACGGATTCACTTGGA
GTAGGACTTGGTGTAGTTATGATTGCCATGGTGATATTATTCCTGGTAGT
TGTCGTTAAACTAGGTAAATTTTATTATCTCATGTTACAAGCCTTGAGAA
GAGATTATAATTCAAAACAGCTAATTGGAAGACACTTTTTGTCCTTTAAC
TATTATTCTTTGCCAAATCATGACTCATAGATTAATTATGTATGTGCAGT
AAACAATAACCTTCTAGCAAGTTAAACCTTGATGCTTGTTTCCCCTCCAA
ATCTTATTACTTGCTAACACACTTTCCGTGGTGAAGCATAAACAATTACA
TTACATGAAAACATGGTTCTTAATTTTgatgacaaaaattctttctATAC
CACATTATANAAGGCAAAAAGTCATTGCACTATTTCAATTATttatttca
attcatttttcTCCAGTTCCCGATTTGTTCTGTTCTTGTTCAATTCCTCA
GCCTGTCTAAAAGCTGCTGATTTTCTTTTCCTTCATACTATAGGAAACAC
TTTTTATTCATGCAACAACTGGGCAGGTGGCATGTCCGCCATCTACGCAC
TACCCGGTGCTGGAAATACGGTCGGACTACGTGTTGGTGCTTGTTTTGGG
TATGGTTTCATTGTCATCGCAATTTCATTGGCTGATAAAACGGATTCACT
TGGAGTAGGACTTGGTGTAGTTATGATTGCCATGGTGATATTATTCCTGG
TAGTTGTCGTTAAACTAGGTAAATTTTATTATCTCATGTTACAAGCCTTG
AGAAGAGATTATAATTCAAAACAGCTAATTGGAAGACACTTTTTGTCCTT
TAACTATTATTCTTTGCCAAATCATGACTCATAGATTAATTATGTATGTG
CAGTAAACAATAACCTTCTAGCAAGTTAAACCTTGATGCTTGTTTCCCCT
CCAAATCTTATTACTTGCTAACACACTTTCCGTGGTGAAGCATAAACAAT
TACATTACATGAAAACATGGTTCTTAATTTTgatgacaaaaattctttct
ATACCACATTATATCATTTCCATAGGTTTAGATGGTGCACGATTCGCTAA
AGGATTGCTGCCGATCAGTATGCCAGCAGGATCCACCAACATTGTTTTAA
GCTTGGTAGGAACAACTGCTATCGGCTTCAACCTATTCTTAGGTGGACAG
ATGGCAGAAGGGAAAACGCTTCCACAAGCACAAAGAGGGATTGCATTTTC
AACAGTAATGACTCTGATTGTGTCAGTCTTAATCATGATTGTTGGAGATG
GTACAGAGTTACAGAAAGGGTTATTCACCATCGCCAACTTGTCTGGTACT
GTAGAAAATCTGACTGGAGGTGCTGGTCTTTGGATATTTTGTCTGGGCTT
CATTGCAGCCGCTTTAAGTTCCATGTTAGTGTGCCCGTTAGGATCAGTGA
TGACTTGTGAAAGCGTTTTCAATATTTATGCGGAAAATGACGAGCAGTCG
GCAATGGAGTATAAGAGCACTGGAGAGAAGGAACAGGATCAAGGTACAAA
AGAAGGGGAGCAAGTTATTCAAATCCAAAGTGAAGGCCAAGAAAGATTGT
TTCCCAAGAAATATGCACGTGCTTTGATGGTCATAATGGTATCCGTAGCT
GTGATTGTGAACGCTGCAAATGCACCACCTGTTAAAGTCATCTTGGTCGC
TCAAGTAAggctttttcttatttttctaaactAATTTTGACACAAGGCAT
ACGTACTGATAGCTTCTAAGATCTTAATAAGGCCATCAGgtgttaaattt
tgaaaataataaaaacctACTTACTTGAAAACGTTCTCCAACAACTGATT
TGTGCGTCAACCTGAAGTAAGAAATAAGCTGGAAAATTATCTTATCTACA
CTAAGCAACTGAAGTTTATATAATGTTCATGGATTTTTTCATTAATTGAA
GTACCTTTGAATCTAATTTAGGTGTTCAATGGTTGTCTTCTCCCCTTCTT
TTCTATCTGTCTATTGATCTGTTTGAACGATCCACAATTTATGGCATCTG
CTCCACAAAAAGGATGGTCCAATTGCTTCCTCACTACTGCTGTCATTATA
ACTTTGTTCCTGACCGCAAATTCCATGATTCAAAACCTCTTCGGATGGAC
TACAACTAATGGTCATATCTTGAAATCCACATTTGACACCatcaaattta
gtttttctggAGTGATTGCGGTGGCGATTAtgctttgtttgtttttgtgt
acTAGTCTAGGAAAGAATGTTTGCAAAAGTTTAAATTGCTTTAATCGTGT
AGAAGACCTAAGAACATAAAAGATGATGATGGTGAATTTTATTAGTAACA
CTATAGAACCCCCTCTAATATATCTATACATGACAAAAGAAATACAAATT
ATCCTCGACTCTGGTAGTCATTAAAACCTACAATGGCGCAAAGAGCGACA
AATACCACGAGCGAAAAACCCACGTGTCCGGAAAAAGTAGAACAGATTTT
ATTTAAAGTATAATCATCAGAACTCATTATTTTACTTGAATTCAGAACAA
TTGAACTAATGGTATGGAATTTCTTTGTCGAATCGATAAATACTAAAagt
atttttgtttacttaaatTTTGTTCCAATATTTCCCCTAACCCTATAGAC
ACACAAAGATagaattttaagaaagaaatccttaatttttaaaattgcat
tttcgattttcatttttaagctCAATGGCCTATACTTTAGACGTAAACAA
TAAGAGTCATAGGAAAAATATCTAGCTCATTCATAAATTCTCTagataaa
tacaaaaatatacaaaaaacaaatataaacctTCCTTTTTGATGACCATC
CCACCCTTTTTTCGGGAAATGTACGTACCCTAGTAAAACATTTTTCAGCG
CTGGCATTTAGTTAAATTTTCAGTGAAATAAGTCTTTTGAGAGTCTTTTA
ATGGCCAATANcaaatttagtttttctggAGTGATTGCGGTGGCGATTAt
gctttgtttgtttttgtgtacTAGTCTAGGAAAGAATGTTTGCAAAAGTT
TAAATTGCTTTAATCGTGTAGAAGACCTAAGAACATAAAAGATGATGATG
GTGAATTTTATTAGTAACACTATAGAACCCCCTTTAATGTATCTATACAT
GACAAAAGAAATACAAATTATCCTCGACTCTGGTAGTCATTAAAACCTAC
AATGGCGCGAAGAGCGACAAATACCACGAGCGAAAAACCCACGTGTCCGG
AAAAAGTAGAACAGATTTTATTTAAAGTATAATCATCAGAACTCATTATT
TTACTTGAATTCAGAACAATTGAACTAATGGTATGGAATTTCTTTGTCGA
ATCGATAAATACTAAAagtatttttgtttacttaaatTTTGTTCCAATAT
TTCCCCTAACCCTATAGACACACAAAGATagaattttaagaaagaaatcc
ttaatttttaaaattgcattttcgat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007328XLOC_007328Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00013100-exon-sc0000162-1491911889:266509..266727TCONS_00013100-exon-sc0000162-1491911889:266509..266727Clytia hemisphaericaexon
TCONS_00013100-exon-sc0000162-1510915933:266509..266727TCONS_00013100-exon-sc0000162-1510915933:266509..266727Clytia hemisphaericaexon
TCONS_00013100-exon-sc0000162-1575043694:266509..266727TCONS_00013100-exon-sc0000162-1575043694:266509..266727Clytia hemisphaericaexon
TCONS_00013100-exon-sc0000162-1491911889:266928..267056TCONS_00013100-exon-sc0000162-1491911889:266928..267056Clytia hemisphaericaexon
TCONS_00013100-exon-sc0000162-1510915933:266928..267056TCONS_00013100-exon-sc0000162-1510915933:266928..267056Clytia hemisphaericaexon
TCONS_00013100-exon-sc0000162-1575043694:266928..267056TCONS_00013100-exon-sc0000162-1575043694:266928..267056Clytia hemisphaericaexon
TCONS_00013100-exon-sc0000162-1491911889:267902..268126TCONS_00013100-exon-sc0000162-1491911889:267902..268126Clytia hemisphaericaexon
TCONS_00013100-exon-sc0000162-1510915933:267902..268126TCONS_00013100-exon-sc0000162-1510915933:267902..268126Clytia hemisphaericaexon
TCONS_00013100-exon-sc0000162-1575043694:267902..268126TCONS_00013100-exon-sc0000162-1575043694:267902..268126Clytia hemisphaericaexon
TCONS_00013100-exon-sc0000162-1491911889:268434..269062TCONS_00013100-exon-sc0000162-1491911889:268434..269062Clytia hemisphaericaexon
TCONS_00013100-exon-sc0000162-1510915933:268434..269062TCONS_00013100-exon-sc0000162-1510915933:268434..269062Clytia hemisphaericaexon
TCONS_00013100-exon-sc0000162-1575043694:268434..269062TCONS_00013100-exon-sc0000162-1575043694:268434..269062Clytia hemisphaericaexon
TCONS_00013100-exon-sc0000162-1491911889:269330..270834TCONS_00013100-exon-sc0000162-1491911889:269330..270834Clytia hemisphaericaexon
TCONS_00013100-exon-sc0000162-1510915933:269330..270834TCONS_00013100-exon-sc0000162-1510915933:269330..270834Clytia hemisphaericaexon
TCONS_00013100-exon-sc0000162-1575043694:269330..270834TCONS_00013100-exon-sc0000162-1575043694:269330..270834Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000162supercontigsc0000162:266509..270834 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0747534	0.0687345	0.00219031	0	0	0	0.0284129	0	0.0593968	0	0.0071945	0	4.85963	3.49217	0	0.0942513	0	0	0	0	0	0	0	0	0.00913132	0.230024	0	0	0.189921	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00013100 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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