TCONS_00013093 (transcript) - C. hemisphaerica

Overview
NameTCONS_00013093
Unique NameTCONS_00013093
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2924

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00013093 ID=TCONS_00013093|Name=TCONS_00013093|organism=Clytia hemisphaerica|type=transcript|length=2924bp
GACGGTTTAAAAGATGTACTACTCGAGTTATGATAATATATGATAGATAT
TTCATATATATGCAAGCTgacaaaacaataacaattttACCTCGAAATTG
GATATATGTCCCCTAAAAATAATACTGCGGCGGAGAAGTACTTATGAAGT
GGCGATTGAAATAtggaaaacaataaaaatagaaGCAATCCTACAGAGGG
TCAACAGCTTTTACAGACTGAAAACTGCAACAGAGGGGAGAGTCATACAC
GCAGCAAAATGAGGAATAGCAAGATTTTCAAAGAGATTGTGAGCCTTCTA
TACTGGACCATGTTGGCGGCTTGTACAGTGGGGCCGGGAACCGTAGTCAC
TTGCGCAAGGGCCGGTGCTGAATTTGATTTGAACTTGATTTGGGCGTTGA
TTTTTGCTTCCATTCTCTCATATACTTTGCAAGAAGGTACAGCAAGACTG
ACAATAAAAAGTGGTAAAAGCCTTGGTCAATGTCTTCAAGCAAAATATAA
ACATGGTCGACTGATATGGGGCGTGGGCGTTATTTGCTGGGTGGTGGCGG
TCTGTGTATTTCTTGGAAACACTTTTTATTCATGCAACAACTGGGCAGGT
GGCATGTCCGCCATCTACGCACTACCCGGTGCTGGAAATACGGTCGGACT
ACGTGTTGGTGCTTGTTTTGGGTATGGTTTCATTGTCATCGCAATTTCAT
TGGCTGATAAAACGGATTCACTTGGAGTAGGACTTGGTGTAGTTATGATT
GCCATGGTGATATTATTCCTGGTAGTTGTCGTTAAACTAGGTTTAGATGG
TGCACGATTCGCTAAAGGATTGCTGCCGATCAGTATGCCAGCAGGATCCA
CCAACATTGTTTTAAGCTTGGTAGGAACAACTGCTATCGGCTTCAACCTA
TTCTTAGGTGGACAGATGGCAGAAGGGAAAACGCTTCCACAAGCACAAAG
AGGGATTGCATTTTCAACAGTAATGACTCTGATTGTGTCAGTCTTAATCA
TGATTGTTGGAGATGGTACAGAGTTACAGAAAGGGTTATTCACCATCGCC
AACTTGTCTGGTACTGTAGAAAATCTGACTGGAGGTGCTGGTCTTTGGAT
ATTTTGTCTGGGCTTCATTGCAGCCGCTTTAAGTTCCATGTTAGTGTGCC
CGTTAGGATCAGTGATGACTTGTGAAAGCGTTTTCAATATTTATGCGGAA
AATGACGAGCAGTCGGCAATGGAGTATAAGAGCACTGGAGAGAAGGAACA
GGATCAAGGTACAAAAGAAGGGGAGCAAGTTATTCAAATCCAAAGTGAAG
GCCAAGAAAGATTGTTTCCCAAGAAATATGCACGTGCTTTGATGGTCATA
ATGGTATCCGTAGCTGTGATTGTGAACGCTGCAAATGCACCACCTGTTAA
AGTCATCTTGGTCGCTCAAGTGTTCAATGGTTGTCTTCTCCCCTTCTTTT
CTATCTGTCTATTGATCTGTTTGAACGATCCACAATTTATGGCATCTGCT
CCACAAAAAGGATGGTCCAATTGCTTCCTCACTACTGCTGTCATTATAAC
TTTGTTCCTGACCGCAAATTCCATGATTCAAAACCTCTTCGGATGGACTA
CAACTAATGGTCATATCTTGAAATCCACATTTGACACCatcaaatttagt
ttttctggAGTGATTGCGGTGGCGATTAtgctttgtttgtttttgtgtac
TAGTCTAGGAAAGAATGTTTGCAAAAGTTTAAATTGCTTTAATCGTGTAG
AAGACCTAAGAACATAAAAGATGATGATGGTGAATTTTATTAGTAACACT
ATAGAACCCCCTCTAATATATCTATACATGACAAAAGAAATACAAATTAT
CCTCGACTCTGGTAGTCATTAAAACCTACAATGGCGCAAAGAGCGACAAA
TACCACGAGCGAAAAACCCACGTGTCCGGAAAAAGTAGAACAGATTTTAT
TTAAAGTATAATCATCAGAACTCATTATTTTACTTGAATTCAGAACAATT
GAACTAATGGTATGGAATTTCTTTGTCGAATCGATAAATACTAAAagtat
ttttgtttacttaaatTTTGTTCCAATATTTCCCCTAACCCTATAGACAC
ACAAAGATagaattttaagaaagaaatccttaatttttaaaattgcattt
tcgattttcatttttaagctCAATGGCCTATACTTTAGACGTAAACAATA
AGAGTCATAGGAAAAATATCTAGCTCATTCATAAATTCTCTagataaata
caaaaatatacaaaaaacaaatataaacctTCCTTTTTGATGACCATCCC
ACCCTTTTTTCGGGAAATGTACGTACCCTAGTAAAACATTTTTCAGCGCT
GGCATTTAGTTAAATTTTCAGTGAAATAAGTCTTTTGAGAGTCTTTTAAT
GGCCAATANcaaatttagtttttctggAGTGATTGCGGTGGCGATTAtgc
tttgtttgtttttgtgtacTAGTCTAGGAAAGAATGTTTGCAAAAGTTTA
AATTGCTTTAATCGTGTAGAAGACCTAAGAACATAAAAGATGATGATGGT
GAATTTTATTAGTAACACTATAGAACCCCCTTTAATGTATCTATACATGA
CAAAAGAAATACAAATTATCCTCGACTCTGGTAGTCATTAAAACCTACAA
TGGCGCGAAGAGCGACAAATACCACGAGCGAAAAACCCACGTGTCCGGAA
AAAGTAGAACAGATTTTATTTAAAGTATAATCATCAGAACTCATTATTTT
ACTTGAATTCAGAACAATTGAACTAATGGTATGGAATTTCTTTGTCGAAT
CGATAAATACTAAAagtatttttgtttacttaaatTTTGTTCCAATATTT
CCCCTAACCCTATAGACACACAAAGATagaattttaagaaagaaatcctt
aatttttaaaattgcattttcgat
Run BLAST on NCBI

transcript from alignment at sc0000162:265612..270834+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00013093 ID=TCONS_00013093|Name=TCONS_00013093|organism=Clytia hemisphaerica|type=transcript|length=5223bp|location=Sequence derived from alignment at sc0000162:265612..270834+ (Clytia hemisphaerica)
GACGGTTTAAAAGATGTACTACTCGAGTTATGATAATATATGATAGATAT
TTCATATATATGCAAGCTgacaaaacaataacaattttACCTCGAAATTG
GATATATGTCCCCTAAAAATAATACTGCGGCGGAGAAGTACTTATGAAGT
GGCGATTGAAATAtggaaaacaataaaaatagaaGCAATCCTACAGAGGG
TCAACAGCTTTTACAGACTGAAAACTGCAACAGAGGGGAGAGTCATACAC
GCAGCAAAATGAGGAATAGCAAGATTTTCAAAGAGATTGTGAGCCTTCTA
TACTGGACCATGTTGGCGGCTTGTACAGTGGGGCCGGGAACCGTAGTCAC
TTGCGCAAGGGCCGGTGCTGAATTTGATTTGAACTTGATTTGGGCGTTGA
TTTTTGCTTCCATTCTCTCATATACTTTGCAAGAAGGTAAAGAATTTGAG
CACAGACAGAAATGATGAACGTCGTTTTACAGAAACACATTTTCTTTTCC
ATCGtctattctattctatttaGGGTGGAGTTATAACCATGCCAACCCTC
TTAGCTTTCATTACACTCGGAACATTGACAAGTTACTTGTTAACTTTGCT
AACTTATCTGTACGTAATATCATTATCCACCATTAGGTACAGCAAGACTG
ACAATAAAAAGTGGTAAAAGCCTTGGTCAATGTCTTCAAGCAAAATATAA
ACATGGTCGACTGATATGGGGCGTGGGCGTTATTTGCTGGGTGGTGGCGG
TCTGTGTATTTCTTGGTAAGTTGCCTCAAAAAATGTTTAGCNCTAAAAAT
AATACTGCGGCGGAGAAGTACTTATGAAGTGGCGATTGAAATAtggaaaa
caataaaaatagaaGCAATCCTACAGAGGGTCAACAGCTTTTACAGACTG
AAAACTGCAACAGAGGGGAGAGTCATACACGCAGCAAAATGAGGAATAGC
AAGATTTTCAAAGAGATTGTGAGCCTTCTATACTGGACCATGTTGGCGGC
TTGTACAGTGGGGCCCGGAACCGTAGTCACTTGCGCAAGGGCCGGTGCTG
AATTTGATTTGAACTTGATTTGGGCGTTGATTTTCGCTTCCATTCTCTCA
TATACTTTGCAGGAAGGTAAAGAATTTGAGCATGGACAAAAATGATAAAC
GTTATTTAACCTAAACACGTTTCTTTTACATCATCTATTCTATTCAATTT
AGGGTGGAGTAATAACCATGCCAACCTCTTAGCTTTCGTTACACTCGGAA
CATTGACAAGTTACTTGTTAACTTTGCTAACTTTTATCTGTACGTAATAT
CATTATCCACCTTTAGGTACAGCAAGACTGACAATAAAAAGTGGTAAAAG
CCTTGGTCAATGTCTTCAAGCAAAATATAAACATGGTCGACTGATATGGG
GCGTGGGCGTTATTTGCTGGGTGGTGGCGGTCTGTGTATTTCTTGGTAAG
TTGCCTCAAAAAATGTTTAGCCACCTCGGTTTAAAGCtcattcgattgac
aaaaagGCAAAAAGTCATTGCACTATTTCAATTATttatttcaattcatt
tttcTCCAGTTCCCGATTTGTTCTGTTCTTGTTCAATTCCTCAGCCTGTC
TAAAAGCTGCTGATTTTCTTTTCCTTCATACTATAGGAAACACTTTTTAT
TCATGCAACAACTGGGCAGGTGGCATGTCCGCCATCTACGCACTACCCGG
TGCTGGAAATACGGTCGGACTACGTGTTGGTGCTTGTTTTGGGTATGGTT
TCATTGTCATCGCAATTTCATTGGCTGATAAAACGGATTCACTTGGAGTA
GGACTTGGTGTAGTTATGATTGCCATGGTGATATTATTCCTGGTAGTTGT
CGTTAAACTAGGTAAATTTTATTATCTCATGTTACAAGCCTTGAGAAGAG
ATTATAATTCAAAACAGCTAATTGGAAGACACTTTTTGTCCTTTAACTAT
TATTCTTTGCCAAATCATGACTCATAGATTAATTATGTATGTGCAGTAAA
CAATAACCTTCTAGCAAGTTAAACCTTGATGCTTGTTTCCCCTCCAAATC
TTATTACTTGCTAACACACTTTCCGTGGTGAAGCATAAACAATTACATTA
CATGAAAACATGGTTCTTAATTTTgatgacaaaaattctttctATACCAC
ATTATANAAGGCAAAAAGTCATTGCACTATTTCAATTATttatttcaatt
catttttcTCCAGTTCCCGATTTGTTCTGTTCTTGTTCAATTCCTCAGCC
TGTCTAAAAGCTGCTGATTTTCTTTTCCTTCATACTATAGGAAACACTTT
TTATTCATGCAACAACTGGGCAGGTGGCATGTCCGCCATCTACGCACTAC
CCGGTGCTGGAAATACGGTCGGACTACGTGTTGGTGCTTGTTTTGGGTAT
GGTTTCATTGTCATCGCAATTTCATTGGCTGATAAAACGGATTCACTTGG
AGTAGGACTTGGTGTAGTTATGATTGCCATGGTGATATTATTCCTGGTAG
TTGTCGTTAAACTAGGTAAATTTTATTATCTCATGTTACAAGCCTTGAGA
AGAGATTATAATTCAAAACAGCTAATTGGAAGACACTTTTTGTCCTTTAA
CTATTATTCTTTGCCAAATCATGACTCATAGATTAATTATGTATGTGCAG
TAAACAATAACCTTCTAGCAAGTTAAACCTTGATGCTTGTTTCCCCTCCA
AATCTTATTACTTGCTAACACACTTTCCGTGGTGAAGCATAAACAATTAC
ATTACATGAAAACATGGTTCTTAATTTTgatgacaaaaattctttctATA
CCACATTATATCATTTCCATAGGTTTAGATGGTGCACGATTCGCTAAAGG
ATTGCTGCCGATCAGTATGCCAGCAGGATCCACCAACATTGTTTTAAGCT
TGGTAGGAACAACTGCTATCGGCTTCAACCTATTCTTAGGTGGACAGATG
GCAGAAGGGAAAACGCTTCCACAAGCACAAAGAGGGATTGCATTTTCAAC
AGTAATGACTCTGATTGTGTCAGTCTTAATCATGATTGTTGGAGATGGTA
CAGAGTTACAGAAAGGGTTATTCACCATCGCCAACTTGTCTGGTACTGTA
GAAAATCTGACTGGAGGTGCTGGTCTTTGGATATTTTGTCTGGGCTTCAT
TGCAGCCGCTTTAAGTTCCATGTTAGTGTGCCCGTTAGGATCAGTGATGA
CTTGTGAAAGCGTTTTCAATATTTATGCGGAAAATGACGAGCAGTCGGCA
ATGGAGTATAAGAGCACTGGAGAGAAGGAACAGGATCAAGGTACAAAAGA
AGGGGAGCAAGTTATTCAAATCCAAAGTGAAGGCCAAGAAAGATTGTTTC
CCAAGAAATATGCACGTGCTTTGATGGTCATAATGGTATCCGTAGCTGTG
ATTGTGAACGCTGCAAATGCACCACCTGTTAAAGTCATCTTGGTCGCTCA
AGTAAggctttttcttatttttctaaactAATTTTGACACAAGGCATACG
TACTGATAGCTTCTAAGATCTTAATAAGGCCATCAGgtgttaaattttga
aaataataaaaacctACTTACTTGAAAACGTTCTCCAACAACTGATTTGT
GCGTCAACCTGAAGTAAGAAATAAGCTGGAAAATTATCTTATCTACACTA
AGCAACTGAAGTTTATATAATGTTCATGGATTTTTTCATTAATTGAAGTA
CCTTTGAATCTAATTTAGGTGTTCAATGGTTGTCTTCTCCCCTTCTTTTC
TATCTGTCTATTGATCTGTTTGAACGATCCACAATTTATGGCATCTGCTC
CACAAAAAGGATGGTCCAATTGCTTCCTCACTACTGCTGTCATTATAACT
TTGTTCCTGACCGCAAATTCCATGATTCAAAACCTCTTCGGATGGACTAC
AACTAATGGTCATATCTTGAAATCCACATTTGACACCatcaaatttagtt
tttctggAGTGATTGCGGTGGCGATTAtgctttgtttgtttttgtgtacT
AGTCTAGGAAAGAATGTTTGCAAAAGTTTAAATTGCTTTAATCGTGTAGA
AGACCTAAGAACATAAAAGATGATGATGGTGAATTTTATTAGTAACACTA
TAGAACCCCCTCTAATATATCTATACATGACAAAAGAAATACAAATTATC
CTCGACTCTGGTAGTCATTAAAACCTACAATGGCGCAAAGAGCGACAAAT
ACCACGAGCGAAAAACCCACGTGTCCGGAAAAAGTAGAACAGATTTTATT
TAAAGTATAATCATCAGAACTCATTATTTTACTTGAATTCAGAACAATTG
AACTAATGGTATGGAATTTCTTTGTCGAATCGATAAATACTAAAagtatt
tttgtttacttaaatTTTGTTCCAATATTTCCCCTAACCCTATAGACACA
CAAAGATagaattttaagaaagaaatccttaatttttaaaattgcatttt
cgattttcatttttaagctCAATGGCCTATACTTTAGACGTAAACAATAA
GAGTCATAGGAAAAATATCTAGCTCATTCATAAATTCTCTagataaatac
aaaaatatacaaaaaacaaatataaacctTCCTTTTTGATGACCATCCCA
CCCTTTTTTCGGGAAATGTACGTACCCTAGTAAAACATTTTTCAGCGCTG
GCATTTAGTTAAATTTTCAGTGAAATAAGTCTTTTGAGAGTCTTTTAATG
GCCAATANcaaatttagtttttctggAGTGATTGCGGTGGCGATTAtgct
ttgtttgtttttgtgtacTAGTCTAGGAAAGAATGTTTGCAAAAGTTTAA
ATTGCTTTAATCGTGTAGAAGACCTAAGAACATAAAAGATGATGATGGTG
AATTTTATTAGTAACACTATAGAACCCCCTTTAATGTATCTATACATGAC
AAAAGAAATACAAATTATCCTCGACTCTGGTAGTCATTAAAACCTACAAT
GGCGCGAAGAGCGACAAATACCACGAGCGAAAAACCCACGTGTCCGGAAA
AAGTAGAACAGATTTTATTTAAAGTATAATCATCAGAACTCATTATTTTA
CTTGAATTCAGAACAATTGAACTAATGGTATGGAATTTCTTTGTCGAATC
GATAAATACTAAAagtatttttgtttacttaaatTTTGTTCCAATATTTC
CCCTAACCCTATAGACACACAAAGATagaattttaagaaagaaatcctta
atttttaaaattgcattttcgat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007328XLOC_007328Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00013093-exon-sc0000162-1491911889:265612..266047TCONS_00013093-exon-sc0000162-1491911889:265612..266047Clytia hemisphaericaexon
TCONS_00013093-exon-sc0000162-1510915933:265612..266047TCONS_00013093-exon-sc0000162-1510915933:265612..266047Clytia hemisphaericaexon
TCONS_00013093-exon-sc0000162-1575043694:265612..266047TCONS_00013093-exon-sc0000162-1575043694:265612..266047Clytia hemisphaericaexon
TCONS_00013093-exon-sc0000162-1491911889:266928..267056TCONS_00013093-exon-sc0000162-1491911889:266928..267056Clytia hemisphaericaexon
TCONS_00013093-exon-sc0000162-1510915933:266928..267056TCONS_00013093-exon-sc0000162-1510915933:266928..267056Clytia hemisphaericaexon
TCONS_00013093-exon-sc0000162-1575043694:266928..267056TCONS_00013093-exon-sc0000162-1575043694:266928..267056Clytia hemisphaericaexon
TCONS_00013093-exon-sc0000162-1491911889:267902..268126TCONS_00013093-exon-sc0000162-1491911889:267902..268126Clytia hemisphaericaexon
TCONS_00013093-exon-sc0000162-1510915933:267902..268126TCONS_00013093-exon-sc0000162-1510915933:267902..268126Clytia hemisphaericaexon
TCONS_00013093-exon-sc0000162-1575043694:267902..268126TCONS_00013093-exon-sc0000162-1575043694:267902..268126Clytia hemisphaericaexon
TCONS_00013093-exon-sc0000162-1491911889:268434..269062TCONS_00013093-exon-sc0000162-1491911889:268434..269062Clytia hemisphaericaexon
TCONS_00013093-exon-sc0000162-1510915933:268434..269062TCONS_00013093-exon-sc0000162-1510915933:268434..269062Clytia hemisphaericaexon
TCONS_00013093-exon-sc0000162-1575043694:268434..269062TCONS_00013093-exon-sc0000162-1575043694:268434..269062Clytia hemisphaericaexon
TCONS_00013093-exon-sc0000162-1491911889:269330..270834TCONS_00013093-exon-sc0000162-1491911889:269330..270834Clytia hemisphaericaexon
TCONS_00013093-exon-sc0000162-1510915933:269330..270834TCONS_00013093-exon-sc0000162-1510915933:269330..270834Clytia hemisphaericaexon
TCONS_00013093-exon-sc0000162-1575043694:269330..270834TCONS_00013093-exon-sc0000162-1575043694:269330..270834Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000162supercontigsc0000162:265612..270834 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0	0	0	0.932522	9.41089e-07	0	0	0	0	0.670331	0.0329482	0	0	0	0	0	0.0024534	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00013093 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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