TCONS_00013088 (transcript) - C. hemisphaerica

Overview
NameTCONS_00013088
Unique NameTCONS_00013088
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1166

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00013088 ID=TCONS_00013088|Name=TCONS_00013088|organism=Clytia hemisphaerica|type=transcript|length=1166bp
CATCAAAGAAACACCACTTGAAAGTCCTTCTGATATTGGGTATGTCAGCT
CAGCAGAATAAGACATACCAATAGCCATAAAAGGGATGCTGAAAATACAA
AGTGTAGCATATGTAAGGAATAGTAACAATTTGACTTTCCAATACAATAT
CACAGAACTAAATGCTATCCAGCTTAGAATCTGCATAAAAAACAGGAAAA
ACATCATTTTCTTGTAACATTTGTATTTGTCAACAATGGAAGCAAAGACA
ATGACACCAATTATAGTTGCAGTGTTGCCTGTGAACCCTATCCAACCAAT
GTCTTTGGAGTTCGCAATGTGACTTGCCATTTGGTTCaaacaaatgataa
aaaagttgaataaGCCTGCCTGTATACCAAAAGCAAgacaaaatatcatg
aaatttttatcatgtaGAAGCATTCTTAAGGATTGTTTAAAGCAAGGTGT
GGCAACTCTTTCATCGATAGTAATGCTTGAACTATCGAGAACAGCTTTTG
CATAAGAGGGTGGTAATGGaggtttttcatcaaaaaacaaataaGCTGAA
ATCAAACACACTGCTAAGAGAGCAACATGCGAGATATTCATCCTCAATAA
TCCATCATAAATTTCATCCATATTGTCACTATCTGGAACCATGTAAGAGG
GCTGTAAAAAACCAATAGCTTGTCCAATGAGATTGAATATGCCTGATAAA
CCTATAGCTTTTGCATACTCTTGTTCAGAAAACCATACCATAGATAAGCG
TGATGGTATTTGTGCTACTGCTCCAAccgaaaaagcagaaaaaatctGAC
CCGTCATAACAAACGAAATCCCTTGCTGTGTTGTACCAGCTAGATGAAGA
CACACACAAACTCCATTTAAACTGGATCCAATTATCAAAAGTGTTTTGAT
TCCAAAATTGTCCATGCAGTAAGCTGATGGAAGGGCAATCAAGACATAAA
CCAAGCTAAAAATATTTCCGGCCCAGTTAGTCAACTCAGGTGATATATGG
TAATACTTGCAAACAATTTTGTTAATAGCAGTAATACATGTGAACAAAGT
TGTGTTAGCCATCGAATTAATAGAGAATATTAACAATATGAGCCATCGTT
TCTTATAAACTTTAACAGTCGAAGGTGTCTGTATGTCATCATTTGAATTA
ATAAGTTTTTCAGTGT
Run BLAST on NCBI

transcript from alignment at sc0000162:218401..219566+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00013088 ID=TCONS_00013088|Name=TCONS_00013088|organism=Clytia hemisphaerica|type=transcript|length=1166bp|location=Sequence derived from alignment at sc0000162:218401..219566+ (Clytia hemisphaerica)
CATCAAAGAAACACCACTTGAAAGTCCTTCTGATATTGGGTATGTCAGCT
CAGCAGAATAAGACATACCAATAGCCATAAAAGGGATGCTGAAAATACAA
AGTGTAGCATATGTAAGGAATAGTAACAATTTGACTTTCCAATACAATAT
CACAGAACTAAATGCTATCCAGCTTAGAATCTGCATAAAAAACAGGAAAA
ACATCATTTTCTTGTAACATTTGTATTTGTCAACAATGGAAGCAAAGACA
ATGACACCAATTATAGTTGCAGTGTTGCCTGTGAACCCTATCCAACCAAT
GTCTTTGGAGTTCGCAATGTGACTTGCCATTTGGTTCaaacaaatgataa
aaaagttgaataaGCCTGCCTGTATACCAAAAGCAAgacaaaatatcatg
aaatttttatcatgtaGAAGCATTCTTAAGGATTGTTTAAAGCAAGGTGT
GGCAACTCTTTCATCGATAGTAATGCTTGAACTATCGAGAACAGCTTTTG
CATAAGAGGGTGGTAATGGaggtttttcatcaaaaaacaaataaGCTGAA
ATCAAACACACTGCTAAGAGAGCAACATGCGAGATATTCATCCTCAATAA
TCCATCATAAATTTCATCCATATTGTCACTATCTGGAACCATGTAAGAGG
GCTGTAAAAAACCAATAGCTTGTCCAATGAGATTGAATATGCCTGATAAA
CCTATAGCTTTTGCATACTCTTGTTCAGAAAACCATACCATAGATAAGCG
TGATGGTATTTGTGCTACTGCTCCAAccgaaaaagcagaaaaaatctGAC
CCGTCATAACAAACGAAATCCCTTGCTGTGTTGTACCAGCTAGATGAAGA
CACACACAAACTCCATTTAAACTGGATCCAATTATCAAAAGTGTTTTGAT
TCCAAAATTGTCCATGCAGTAAGCTGATGGAAGGGCAATCAAGACATAAA
CCAAGCTAAAAATATTTCCGGCCCAGTTAGTCAACTCAGGTGATATATGG
TAATACTTGCAAACAATTTTGTTAATAGCAGTAATACATGTGAACAAAGT
TGTGTTAGCCATCGAATTAATAGAGAATATTAACAATATGAGCCATCGTT
TCTTATAAACTTTAACAGTCGAAGGTGTCTGTATGTCATCATTTGAATTA
ATAAGTTTTTCAGTGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007325XLOC_007325Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00013088-exon-sc0000162-1491911889:218401..219566TCONS_00013088-exon-sc0000162-1491911889:218401..219566Clytia hemisphaericaexon
TCONS_00013088-exon-sc0000162-1510915933:218401..219566TCONS_00013088-exon-sc0000162-1510915933:218401..219566Clytia hemisphaericaexon
TCONS_00013088-exon-sc0000162-1575043694:218401..219566TCONS_00013088-exon-sc0000162-1575043694:218401..219566Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000162supercontigsc0000162:218401..219566 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.535008	0.628692	0.602584	0.0949204	1.82756	2.3438	1.03352	1.18457	0.101302	0.15548	0	0	0.168771	0.132452	0	0	0.287091	0.168165	0	0.129092	0.24873	0.12704	0.419141	0.723365	0.256713	0.431813	0	0.260309	0	0.124174
Blast
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BLAST of TCONS_00013088 vs. Swiss-Prot (Human)
Match: FLVC2 (Feline leukemia virus subgroup C receptor-related protein 2 OS=Homo sapiens GN=FLVCR2 PE=1 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 9.853e-45
Identity = 105/375 (28.00%), Postives = 197/375 (52.53%), Query Frame = -3 
Query:   10 STVKVYKKRWLILLIFSINSMANTTLFTCITAINKIVCKYYHISPELTNWAGNIFSLVYVLIALPSAYCMDNFGIKTLLIIGSSLNGVCVCLHLAGTTQQGISFVMTGQIFSAFSVGAVAQIPSRLSMVWFSEQEYAKAIGLSGIFNLIGQAIGFLQPSYMVPDSDNMDEI--YDGLLRMNISHVALLAVCLISAYLFFDEKPPLPPSYAKAVLDSSSITIDERVATPCFKQSLRMLLHDKNFMIFCLAFGIQAGLFNFFIICLNQMA--SHIANSKDIGWIGFTGNTATIIGVIVFASIVDKYKCYKKMMFFLFFMQILSWIAFSSVILYWKVKLLLFLTYATLCIFSIPFMAIGMSYSAELTYPISEGLSSGV 1122
            S +KV ++RW ++L+FS  SM N+  +    +IN I   +Y +S    +W    + L Y+ + LP A+ ++ FG++T+ + GS+LN +   + L           + GQ+  + +   +  +PSR++ VWF   E + A  ++   N +G AIGFL P  +VP+ ++ DE+  +  ++   I  VA L + L+   + F EKP  PPS A+++  S ++T  +      +  S+  L  + NF++  + +G+ AG F      LN+M    +     + G IG T   A ++G ++    +D+ K YK+    ++ M ++  + ++  +    +  ++F+T  T+  F   ++ +G  ++ ELTYP SEG+SSG+
Sbjct:   76 SVIKVSRRRWAVVLVFSCYSMCNSFQWIQYGSINNIFMHFYGVSAFAIDWLSMCYMLTYIPLLLPVAWLLEKFGLRTIALTGSALNCLGAWVKLGSLKPHLFPVTVVGQLICSVAQVFILGMPSRIASVWFGANEVSTACSVAVFGNQLGIAIGFLVPPVLVPNIEDRDELAYHISIMFYIIGGVATLLLILV--IIVFKEKPKYPPSRAQSL--SYALTSPDA----SYLGSIARLFKNLNFVLLVITYGLNAGAFYALSTLLNRMVIWHYPGEEVNAGRIGLTIVIAGMLGAVISGIWLDRSKTYKETTLVVYIMTLVGMVVYTFTLNLGHL-WVVFITAGTMGFFMTGYLPLGFEFAVELTYPESEGISSGL 441
The following BLAST results are available for this feature:
BLAST of TCONS_00013088 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
FLVC29.853e-4528.00Feline leukemia virus subgroup C receptor-related ... [more]
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