TCONS_00013077 (transcript) - C. hemisphaerica

Overview
NameTCONS_00013077
Unique NameTCONS_00013077
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1227

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00013077 ID=TCONS_00013077|Name=TCONS_00013077|organism=Clytia hemisphaerica|type=transcript|length=1227bp
ttgtaGGTCAACTGACGGTTCTGGCATGTTCAATTGGAGGTTTAAATACA
ATTTCAAATATCACCAAGCTAAAAGACAAATCGTCCGCAAAGAAACGGTG
AGCGTCGAATCAACTTGCTGAAAGTCCCACCATATTTCGGCAAACCCTGG
GGATGGTCAATGGGTAAATATAAAGAACTAGCGAAGAACGAGAATAGGAC
ACCATCTTTGTTCAACTGCTCCACCATTCGTGGATGGTGGCCCTTGGAAA
CGGATGACCCTGAACGAGAAGACGGTGATGGTGGTCGAGTTGAATTGGAA
TTGGAGTTGTTAACGAAAGAAGAAGCGGACGAGAACCCTGTCGGTGAACA
ACGAAATGAACCTCATGCTCTCTCAAAACCTAAACGCCCTCAAGAGAGTA
TGCGGTTATTGATCGGCCCTCTTCGAACACTCAGAATTTTCGTCAATTCA
CATCGTGGTCTTATTTGTAAAGTAGTCTTCTTGTTGCTGCTGGTTATTCT
GATGCTCCTCTTTCTATACGCCATGCCTGGAGCTGCTGTCCAAAAGATGT
TTGGTGCTCGTTGAGATAAATGTCGGGTTTTATTGCAAGTATTTATCTCG
ATTAGTGCATGAATTTAATCAAGGCTTTGTTATGGTAATTTGTTGACCAA
GCATCAAAGAGCAAAAAGAAAATGTACTAACGAGACATCAGACTGTGTCA
ATATAGTTCCCTGTAACTTATCAATCATGCCTCCTCCCCCTGTACTGATC
CTTACAAAGACTACCTCAGCTGAGCTCAGTTGATCTATGTCATTTTGACG
CTCTTTGTCAATTATGGGGTGTAATCTAACAAAACGGcgcaaattttaaa
agaatttaaaaccaATTAGATTTTTGATGAACGAACGAatgtatattttt
gaattttttcctttaaacCTACATACTAAAATACTATTTATAAATTATTT
ACAAATGAAATgtcatatatatatattttgaatGCATTGTTTATTGTATA
TTTTATATGATTTTTACGGGGAAATCACGAGTCATTAAACCAACCAGGAT
TCGCTTccagtaaaaaaataatttatataggggtcattttgaaatagaaa
gttttttaaaaatatttttgtactaTATCTTGAGGGTTGATTTGGTGTTG
GACGTGTGTATATGTATTTGGATGACCATATATTGACcctaaaaaatgaa
acaaaataattgaatatGAATTATTAA
Run BLAST on NCBI

transcript from alignment at sc0000162:104955..109062+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00013077 ID=TCONS_00013077|Name=TCONS_00013077|organism=Clytia hemisphaerica|type=transcript|length=4108bp|location=Sequence derived from alignment at sc0000162:104955..109062+ (Clytia hemisphaerica)
ttgtaGGTCAACTGACGGTTCTGGCATGTTCAATTGGAGGTTTAAATACA
ATTTCAAATATCACCAAGCTAAAAGACAAATCGTCCGCAAAGAAACGGTC
AGTTGAAAGTTCCTTTGTTCGTTTTTTCATTTAGGTCTGCTCGTCTTCTT
TTAATCAAAGGGTCTGCGTTATCAATATATTGCCAATTGGTAAATACTAA
TGGTAGACGAATAGACTCTCATCTTTATCAGTTTCTCGGTGCAACCTGAT
ATAAAAGTTCGAATaatgttggaaaattttcaaaattttaataaacgggg
ggaccaaATTTCCGGAGGGGttagaaattgtacttctgaaaacccaaaat
aaggtaaatataggctaaaatcaggttaTTTAGAGctaaataaggggcct
tctctttggcagctgaaaatattcttgaaaatttataaacaGGGGGTGTc
ctaattttcgaaaaattaacaagcagggggcccgtttatttggaacctaa
gagaaGCTTTTagtactttaagggcagaaactttcgtgggcagaaacttt
cgcactttcgcgtttttcgcgattttgatcctttttcgagaaagtttctg
ccaggtaagaaattaaacctgaaaaacgcgaaagtttttttcgcgaaaaa
taaactttcctactcagttttgcactgtttgctaaatttttgcgtgtttt
tgttaccaaaaaaggtaaattttatatgaattcgcgaaagttctatctgt
aaaatttcggctaaaaccataattcgcgaaacttaaattcgctaaatttc
gcgactttttgacttcgcgaaactttctgcccgtgaaactttctgccctt
aaagtatcaGTACTTATTTCAATGTTTATTCTTTTGCAGAACGTAGCATT
TGAAAAGACAGCTCTATATTATCGACCGGAGCTCGTGATTGAATGTTTAG
AGAACGACCTTTTCTCACACGATGTTCTAGGTATGTATTGTACGGGATTC
gaagatttgaaaactttttaaaaaaaagaaaagtttaaatTACATAGACA
TAGTTGTGAAGCTACGAAGAGTTATTATTGTTAATACTTTCTACTCACAA
TACTTTACCGGTAGATAATTCGTTGGTGAAAAATATTCGCCGGTTAAAAA
TATTCGTCTGtcaaaaattccgtcaccgagcgatttttttgtcattttct
acCGAAGAATTTCTTACCGAAAAAGgtatatttttaataaaatttctaac
cGTAGGTGAGCGTCGAATCAACTTGCTGAAAGTCCCACCATATTTCGGCA
AACCCTGGGGATGGTCAATGGGTAAATATAAAGAACTAGCGAAGAACGAG
AATAGGACACCATCTTTGTTCAACTGCTCCACCATTCGTGGATGGTGGCC
CTTGGAAACGGATGACCCTGAACGAGAAGACGGTGATGGTGTAAGTGCCC
AGCTGGtgcacaatgttgtttcaacgttcatcgaATATTCACAACGTCAA
TATAACGTtggatgaacattgaaacaacgtcttgtgccagctgggtgggA
TTTTGAACGTGTCTCTTACAAGATATTTTACACGAATGGCTAAAAGAAAT
CCAGTCATAAGATATATGTGGGCCCAGTCCATTCGCTTTATGCGAGCGCT
ATTTTATGTTATCACGTGTGAACCATGTAAGCATCATTTGACTAATCTCC
ATTGTAGTGGTTTCCACATGGAATATCAGAAAAGTGCTCACTTAAGGCGA
ATGGACTTTAGGCTTGAAAAAGGGAATATGTAAAACTTTAAAGGAGTGGG
CGGTCAAGACTTATCAATGAGAATAAGTGAATTCAatatattgatttgat
tttcttttgtagGGTCGAGTTGAATTGGAATTGGAGTTGTTAACGAAAGA
AGAAGCGGACGAGAACCCTGTCGGTGAACAACGAAATGAACCTCATGCTC
TCTCAAAACCTAAGTAAGTTCGCTAATCACTAGCTCTGCTGGTTTAACTC
ACCAAGTGCCTTAACACACTGTTGATTTGGCTCTTTCTAGGAGGTGTTAG
ATTTGGGGAAGCCTGAGAGTAATATTTTGCGTTGTCACATCATCTCAACA
CCGGACGATATGTTACATGACATGGAATCTCGTTTATGACATTAATTGGT
TTGTTGATCATCCAAGTTGATCGTTAAAATTCTTCTAGTTGACTTTTTGA
CTTATTGGTTAACTTACCGTTGTTGGATATTGTTGATTGTAGGATTATCC
CTTCATAAAGGAAATATAAATTGTAGATCTGATGAGTACCTGTAAATAAT
TCCAAATCAGAAGCTCGAAATCACAATTTTCTCCTTCCTTTTTTAGACGC
CCTCAAGAGAGTATGCGGTTATTGATCGGCCCTCTTCGAACACTCAGAAT
TTTCGTCAATTCACATCGTGGTCTTATTTGTAAAGTAGTCTTCTTGTTGC
TGCTGGTTATTCTGATGCTCCTCTTTCTATACGCCATGCCTGTGAGTAGA
CTTCTGTgaggattttgaattttatgagGATAGACATCCTTGTCTCTTTG
AGGAAGCTCAATTCTGAATGGGAATAGAAACCACCTGTTTTAATGGTAGG
GATTTCAAATTCTATTCTACTTGTTATTGATGTTCAAAAATCTATCCTTT
GAGAGGGGTCCCAGCCGGTCTGTGGCACGGGttgtataagaaaatttttc
gccagaaattgaaattttttacgTACCGAAATTCTCTCTGTCATTTCAAC
ATGACTATTTGCCTAATTTAGAGTGAATTTTCTTCGCCTTTTGATTTCAT
CAGATATTTCATTGATCAATTTTATTATTGGGTATGTGATGTGTGTCAAT
ATAAGTAAGGAATCTCGAGTAGCATTTTGTCCATTCCACTTGCGGATGGA
GAAGGTTTcgtaatttttctttctaataTCGAGTTCGATGTCCTGTTTTA
TCTATTCCCCGAATGCGTGCATTACCTCAAATTTCTCTTCATTTTCGTAA
TCATAGGGAGCTGCTGTCCAAAAGATGTTTGGTGCTCGTTGAGGTACTTG
ATAAGAAAATGTCGAAATATAGAATGGATGAAACTAAAAGAACTTAATAA
ATGGATCATTCTTTCTCTTGGATTTCCTCTACAAGTTACTCAGTCCaaca
aaaatacaaacaaacaaattgtTTCCCATGGAAATCGAGATACGAGAACA
TTTCTGAAACATTACTTCCTTTATCTTAACTCATCCTTTGGTTGAGTTAT
GTAACGCCAATTTTCACGTATTATGAATGTCGTTTCAACATTCATTCCTG
AACATTGGGTAGATATCTCGACTTTCAATCTTGTAGCTTGTTAAGAGCGG
AAATTAAAGTAATTAGGGTAGGAGATTGCGTTTTAATTGGCCACCTAGAG
TTGTTTTTGTAATTCGTAAATGCATTCTATTTATTCTTCATTATAGATAA
ATGTCGGGTTTTATTGCAAGTATTTATCTCGATTAGTGCATGAATTTAAT
CAAGGCTTTGTTATGGTAATTTGTTGACCAAGCATCAAAGAGCAAAAAGA
AAATGTACTAACGAGACATCAGACTGTGTCAATATAGTTCCCTGTAACTT
ATCAATCATGCCTCCTCCCCCTGTACTGATCCTTACAAAGACTACCTCAG
CTGAGCTCAGTTGATCTATGTCATTTTGACGCTCTTTGTCAATTATGGGG
TGTAATCTAACAAAACGGcgcaaattttaaaagaatttaaaaccaATTAG
ATTTTTGATGAACGAACGAatgtatatttttgaattttttcctttaaacC
TACATACTAAAATACTATTTATAAATTATTTACAAATGAAATgtcatata
tatatattttgaatGCATTGTTTATTGTATATTTTATATGATTTTTACGG
GGAAATCACGAGTCATTAAACCAACCAGGATTCGCTTccagtaaaaaaat
aatttatataggggtcattttgaaatagaaagttttttaaaaatattttt
gtactaTATCTTGAGGGTTGATTTGGTGTTGGACGTGTGTATATGTATTT
GGATGACCATATATTGACcctaaaaaatgaaacaaaataattgaatatGA
ATTATTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007321XLOC_007321Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00013077-exon-sc0000162-1491911889:104955..105051TCONS_00013077-exon-sc0000162-1491911889:104955..105051Clytia hemisphaericaexon
TCONS_00013077-exon-sc0000162-1510915933:104955..105051TCONS_00013077-exon-sc0000162-1510915933:104955..105051Clytia hemisphaericaexon
TCONS_00013077-exon-sc0000162-1575043694:104955..105051TCONS_00013077-exon-sc0000162-1575043694:104955..105051Clytia hemisphaericaexon
TCONS_00013077-exon-sc0000162-1491911889:106210..106394TCONS_00013077-exon-sc0000162-1491911889:106210..106394Clytia hemisphaericaexon
TCONS_00013077-exon-sc0000162-1510915933:106210..106394TCONS_00013077-exon-sc0000162-1510915933:106210..106394Clytia hemisphaericaexon
TCONS_00013077-exon-sc0000162-1575043694:106210..106394TCONS_00013077-exon-sc0000162-1575043694:106210..106394Clytia hemisphaericaexon
TCONS_00013077-exon-sc0000162-1491911889:106817..106917TCONS_00013077-exon-sc0000162-1491911889:106817..106917Clytia hemisphaericaexon
TCONS_00013077-exon-sc0000162-1510915933:106817..106917TCONS_00013077-exon-sc0000162-1510915933:106817..106917Clytia hemisphaericaexon
TCONS_00013077-exon-sc0000162-1575043694:106817..106917TCONS_00013077-exon-sc0000162-1575043694:106817..106917Clytia hemisphaericaexon
TCONS_00013077-exon-sc0000162-1491911889:107301..107445TCONS_00013077-exon-sc0000162-1491911889:107301..107445Clytia hemisphaericaexon
TCONS_00013077-exon-sc0000162-1510915933:107301..107445TCONS_00013077-exon-sc0000162-1510915933:107301..107445Clytia hemisphaericaexon
TCONS_00013077-exon-sc0000162-1575043694:107301..107445TCONS_00013077-exon-sc0000162-1575043694:107301..107445Clytia hemisphaericaexon
TCONS_00013077-exon-sc0000162-1491911889:107961..107997TCONS_00013077-exon-sc0000162-1491911889:107961..107997Clytia hemisphaericaexon
TCONS_00013077-exon-sc0000162-1510915933:107961..107997TCONS_00013077-exon-sc0000162-1510915933:107961..107997Clytia hemisphaericaexon
TCONS_00013077-exon-sc0000162-1575043694:107961..107997TCONS_00013077-exon-sc0000162-1575043694:107961..107997Clytia hemisphaericaexon
TCONS_00013077-exon-sc0000162-1491911889:108401..109062TCONS_00013077-exon-sc0000162-1491911889:108401..109062Clytia hemisphaericaexon
TCONS_00013077-exon-sc0000162-1510915933:108401..109062TCONS_00013077-exon-sc0000162-1510915933:108401..109062Clytia hemisphaericaexon
TCONS_00013077-exon-sc0000162-1575043694:108401..109062TCONS_00013077-exon-sc0000162-1575043694:108401..109062Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000162supercontigsc0000162:104955..109062 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	7.77972e-10	0	0	0	0	0	0.695653	0	0.00135788	0.324424	0	4.20444e-05	0.397103	0	9.81581e-10	4.38544e-09	0	1.32783e-08	0.529805	0	0	0.159692	0	0	0.302563	0	0	3.18741e-08
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00013077 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top