TCONS_00013076 (transcript) - C. hemisphaerica

Overview
NameTCONS_00013076
Unique NameTCONS_00013076
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1809

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00013076 ID=TCONS_00013076|Name=TCONS_00013076|organism=Clytia hemisphaerica|type=transcript|length=1809bp
TGTAAACTCAGTGCAGTGGACGTGTTGGAAATGAGAGACCCATTAGAAAG
CTAAGGAAATGGTCGACtcatgtttttcatatttttcattgtaGGTCAAC
TGACGGTTCTGGCATGTTCAATTGGAGGTTTAAATACAATTTCAAATATC
ACCAAGCTAAAAGACAAATCGTCCGCAAAGAAACGAACGTAGCATTTGAA
AAGACAGCTCTATATTATCGACCGGAGCTCGTGATTGAATGTTTAGAGAA
CGACCTTTTCTCACACGATGTTCTAGGTGAGCGTCGAATCAACTTGCTGA
AAGTCCCACCATATTTCGGCAAACCCTGGGGATGGTCAATGGGTAAATAT
AAAGAACTAGCGAAGAACGAGAATAGGACACCATCTTTGTTCAACTGCTC
CACCATTCGTGGATGGTGGCCCTTGGAAACGGATGACCCTGAACGAGAAG
ACGGTGATGGTGGTCGAGTTGAATTGGAATTGGAGTTGTTAACGAAAGAA
GAAGCGGACGAGAACCCTGTCGGTGAACAACGAAATGAACCTCATGCTCT
CTCAAAACCTAAACGCCCTCAAGAGAGTATGCGGTTATTGATCGGCCCTC
TTCGAACACTCAGAATTTTCGTCAATTCACATCGTGGTCTTATTTGTAAA
GTAGTCTTCTTGTTGCTGCTGGTTATTCTGATGCTCCTCTTTCTATACGC
CATGCCTGGAGCTGCTGTCCAAAAGATGTTTGGTGCTCGTTGAGGTACTT
GATAAGAAAATGTCGAAATATAGAATGGATGAAACTAAAAGAACTTAATA
AATGGATCATTCTTTCTCTTGGATTTCCTCTACAAGTTACTCAGTCCaac
aaaaatacaaacaaacaaattgtTTCCCATGGAAATCGAGATACGAGAAC
ATTTCTGAAACATTACTTCCTTTATCTTAACTCATCCTTTGGTTGAGTTA
TGTAACGCCAATTTTCACGTATTATGAATGTCGTTTCAACATTCATTCCT
GAACATTGGGTAGATATCTCGACTTTCAATCTTGTAGCTTGTTAAGAGCG
GAAATTAAAGTAATTAGGGTAGGAGATTGCGTTTTAATTGGCCACCTAGA
GTTGTTTTTGTAATTCGTAAATGCATTCTATTTATTCTTCATTATAGATA
AATGTCGGGTTTTATTGCAAGTATTTATCTCGATTAGTGCATGAATTTAA
TCAAGGCTTTGTTATGGTAATTTGTTGACCAAGCATCAAAGAGCAAAAAG
AAAATGTACTAACGAGACATCAGACTGTGTCAATATAGTTCCCTGTAACT
TATCAATCATGCCTCCTCCCCCTGTACTGATCCTTACAAAGACTACCTCA
GCTGAGCTCAGTTGATCTATGTCATTTTGACGCTCTTTGTCAATTATGGG
GTGTAATCTAACAAAACGGcgcaaattttaaaagaatttaaaaccaATTA
GATTTTTGATGAACGAACGAatgtatatttttgaattttttcctttaaac
CTACATACTAAAATACTATTTATAAATTATTTACAAATGAAATgtcatat
atatatattttgaatGCATTGTTTATTGTATATTTTATATGATTTTTACG
GGGAAATCACGAGTCATTAAACCAACCAGGATTCGCTTccagtaaaaaaa
taatttatataggggtcattttgaaatagaaagttttttaaaaatatttt
tgtactaTATCTTGAGGGTTGATTTGGTGTTGGACGTGTGTATATGTATT
TGGATGACCATATATTGACcctaaaaaatgaaacaaaataattgaatatG
AATTATTAA
Run BLAST on NCBI

transcript from alignment at sc0000162:104867..109062+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00013076 ID=TCONS_00013076|Name=TCONS_00013076|organism=Clytia hemisphaerica|type=transcript|length=4196bp|location=Sequence derived from alignment at sc0000162:104867..109062+ (Clytia hemisphaerica)
TGTAAACTCAGTGCAGTGGACGTGTTGGAAATGAGAGACCCATTAGAAAG
CTAAGGAAATGGTCGACtcatgtttttcatatttttcattgtaGGTCAAC
TGACGGTTCTGGCATGTTCAATTGGAGGTTTAAATACAATTTCAAATATC
ACCAAGCTAAAAGACAAATCGTCCGCAAAGAAACGGTCAGTTGAAAGTTC
CTTTGTTCGTTTTTTCATTTAGGTCTGCTCGTCTTCTTTTAATCAAAGGG
TCTGCGTTATCAATATATTGCCAATTGGTAAATACTAATGGTAGACGAAT
AGACTCTCATCTTTATCAGTTTCTCGGTGCAACCTGATATAAAAGTTCGA
ATaatgttggaaaattttcaaaattttaataaacggggggaccaaATTTC
CGGAGGGGttagaaattgtacttctgaaaacccaaaataaggtaaatata
ggctaaaatcaggttaTTTAGAGctaaataaggggccttctctttggcag
ctgaaaatattcttgaaaatttataaacaGGGGGTGTcctaattttcgaa
aaattaacaagcagggggcccgtttatttggaacctaagagaaGCTTTTa
gtactttaagggcagaaactttcgtgggcagaaactttcgcactttcgcg
tttttcgcgattttgatcctttttcgagaaagtttctgccaggtaagaaa
ttaaacctgaaaaacgcgaaagtttttttcgcgaaaaataaactttccta
ctcagttttgcactgtttgctaaatttttgcgtgtttttgttaccaaaaa
aggtaaattttatatgaattcgcgaaagttctatctgtaaaatttcggct
aaaaccataattcgcgaaacttaaattcgctaaatttcgcgactttttga
cttcgcgaaactttctgcccgtgaaactttctgcccttaaagtatcaGTA
CTTATTTCAATGTTTATTCTTTTGCAGAACGTAGCATTTGAAAAGACAGC
TCTATATTATCGACCGGAGCTCGTGATTGAATGTTTAGAGAACGACCTTT
TCTCACACGATGTTCTAGGTATGTATTGTACGGGATTCgaagatttgaaa
actttttaaaaaaaagaaaagtttaaatTACATAGACATAGTTGTGAAGC
TACGAAGAGTTATTATTGTTAATACTTTCTACTCACAATACTTTACCGGT
AGATAATTCGTTGGTGAAAAATATTCGCCGGTTAAAAATATTCGTCTGtc
aaaaattccgtcaccgagcgatttttttgtcattttctacCGAAGAATTT
CTTACCGAAAAAGgtatatttttaataaaatttctaaccGTAGGTGAGCG
TCGAATCAACTTGCTGAAAGTCCCACCATATTTCGGCAAACCCTGGGGAT
GGTCAATGGGTAAATATAAAGAACTAGCGAAGAACGAGAATAGGACACCA
TCTTTGTTCAACTGCTCCACCATTCGTGGATGGTGGCCCTTGGAAACGGA
TGACCCTGAACGAGAAGACGGTGATGGTGTAAGTGCCCAGCTGGtgcaca
atgttgtttcaacgttcatcgaATATTCACAACGTCAATATAACGTtgga
tgaacattgaaacaacgtcttgtgccagctgggtgggATTTTGAACGTGT
CTCTTACAAGATATTTTACACGAATGGCTAAAAGAAATCCAGTCATAAGA
TATATGTGGGCCCAGTCCATTCGCTTTATGCGAGCGCTATTTTATGTTAT
CACGTGTGAACCATGTAAGCATCATTTGACTAATCTCCATTGTAGTGGTT
TCCACATGGAATATCAGAAAAGTGCTCACTTAAGGCGAATGGACTTTAGG
CTTGAAAAAGGGAATATGTAAAACTTTAAAGGAGTGGGCGGTCAAGACTT
ATCAATGAGAATAAGTGAATTCAatatattgatttgattttcttttgtag
GGTCGAGTTGAATTGGAATTGGAGTTGTTAACGAAAGAAGAAGCGGACGA
GAACCCTGTCGGTGAACAACGAAATGAACCTCATGCTCTCTCAAAACCTA
AGTAAGTTCGCTAATCACTAGCTCTGCTGGTTTAACTCACCAAGTGCCTT
AACACACTGTTGATTTGGCTCTTTCTAGGAGGTGTTAGATTTGGGGAAGC
CTGAGAGTAATATTTTGCGTTGTCACATCATCTCAACACCGGACGATATG
TTACATGACATGGAATCTCGTTTATGACATTAATTGGTTTGTTGATCATC
CAAGTTGATCGTTAAAATTCTTCTAGTTGACTTTTTGACTTATTGGTTAA
CTTACCGTTGTTGGATATTGTTGATTGTAGGATTATCCCTTCATAAAGGA
AATATAAATTGTAGATCTGATGAGTACCTGTAAATAATTCCAAATCAGAA
GCTCGAAATCACAATTTTCTCCTTCCTTTTTTAGACGCCCTCAAGAGAGT
ATGCGGTTATTGATCGGCCCTCTTCGAACACTCAGAATTTTCGTCAATTC
ACATCGTGGTCTTATTTGTAAAGTAGTCTTCTTGTTGCTGCTGGTTATTC
TGATGCTCCTCTTTCTATACGCCATGCCTGTGAGTAGACTTCTGTgagga
ttttgaattttatgagGATAGACATCCTTGTCTCTTTGAGGAAGCTCAAT
TCTGAATGGGAATAGAAACCACCTGTTTTAATGGTAGGGATTTCAAATTC
TATTCTACTTGTTATTGATGTTCAAAAATCTATCCTTTGAGAGGGGTCCC
AGCCGGTCTGTGGCACGGGttgtataagaaaatttttcgccagaaattga
aattttttacgTACCGAAATTCTCTCTGTCATTTCAACATGACTATTTGC
CTAATTTAGAGTGAATTTTCTTCGCCTTTTGATTTCATCAGATATTTCAT
TGATCAATTTTATTATTGGGTATGTGATGTGTGTCAATATAAGTAAGGAA
TCTCGAGTAGCATTTTGTCCATTCCACTTGCGGATGGAGAAGGTTTcgta
atttttctttctaataTCGAGTTCGATGTCCTGTTTTATCTATTCCCCGA
ATGCGTGCATTACCTCAAATTTCTCTTCATTTTCGTAATCATAGGGAGCT
GCTGTCCAAAAGATGTTTGGTGCTCGTTGAGGTACTTGATAAGAAAATGT
CGAAATATAGAATGGATGAAACTAAAAGAACTTAATAAATGGATCATTCT
TTCTCTTGGATTTCCTCTACAAGTTACTCAGTCCaacaaaaatacaaaca
aacaaattgtTTCCCATGGAAATCGAGATACGAGAACATTTCTGAAACAT
TACTTCCTTTATCTTAACTCATCCTTTGGTTGAGTTATGTAACGCCAATT
TTCACGTATTATGAATGTCGTTTCAACATTCATTCCTGAACATTGGGTAG
ATATCTCGACTTTCAATCTTGTAGCTTGTTAAGAGCGGAAATTAAAGTAA
TTAGGGTAGGAGATTGCGTTTTAATTGGCCACCTAGAGTTGTTTTTGTAA
TTCGTAAATGCATTCTATTTATTCTTCATTATAGATAAATGTCGGGTTTT
ATTGCAAGTATTTATCTCGATTAGTGCATGAATTTAATCAAGGCTTTGTT
ATGGTAATTTGTTGACCAAGCATCAAAGAGCAAAAAGAAAATGTACTAAC
GAGACATCAGACTGTGTCAATATAGTTCCCTGTAACTTATCAATCATGCC
TCCTCCCCCTGTACTGATCCTTACAAAGACTACCTCAGCTGAGCTCAGTT
GATCTATGTCATTTTGACGCTCTTTGTCAATTATGGGGTGTAATCTAACA
AAACGGcgcaaattttaaaagaatttaaaaccaATTAGATTTTTGATGAA
CGAACGAatgtatatttttgaattttttcctttaaacCTACATACTAAAA
TACTATTTATAAATTATTTACAAATGAAATgtcatatatatatattttga
atGCATTGTTTATTGTATATTTTATATGATTTTTACGGGGAAATCACGAG
TCATTAAACCAACCAGGATTCGCTTccagtaaaaaaataatttatatagg
ggtcattttgaaatagaaagttttttaaaaatatttttgtactaTATCTT
GAGGGTTGATTTGGTGTTGGACGTGTGTATATGTATTTGGATGACCATAT
ATTGACcctaaaaaatgaaacaaaataattgaatatGAATTATTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007321XLOC_007321Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00013076-exon-sc0000162-1491911889:104867..105051TCONS_00013076-exon-sc0000162-1491911889:104867..105051Clytia hemisphaericaexon
TCONS_00013076-exon-sc0000162-1510915933:104867..105051TCONS_00013076-exon-sc0000162-1510915933:104867..105051Clytia hemisphaericaexon
TCONS_00013076-exon-sc0000162-1575043694:104867..105051TCONS_00013076-exon-sc0000162-1575043694:104867..105051Clytia hemisphaericaexon
TCONS_00013076-exon-sc0000162-1491911889:105844..105934TCONS_00013076-exon-sc0000162-1491911889:105844..105934Clytia hemisphaericaexon
TCONS_00013076-exon-sc0000162-1510915933:105844..105934TCONS_00013076-exon-sc0000162-1510915933:105844..105934Clytia hemisphaericaexon
TCONS_00013076-exon-sc0000162-1575043694:105844..105934TCONS_00013076-exon-sc0000162-1575043694:105844..105934Clytia hemisphaericaexon
TCONS_00013076-exon-sc0000162-1491911889:106210..106394TCONS_00013076-exon-sc0000162-1491911889:106210..106394Clytia hemisphaericaexon
TCONS_00013076-exon-sc0000162-1510915933:106210..106394TCONS_00013076-exon-sc0000162-1510915933:106210..106394Clytia hemisphaericaexon
TCONS_00013076-exon-sc0000162-1575043694:106210..106394TCONS_00013076-exon-sc0000162-1575043694:106210..106394Clytia hemisphaericaexon
TCONS_00013076-exon-sc0000162-1491911889:106817..106917TCONS_00013076-exon-sc0000162-1491911889:106817..106917Clytia hemisphaericaexon
TCONS_00013076-exon-sc0000162-1510915933:106817..106917TCONS_00013076-exon-sc0000162-1510915933:106817..106917Clytia hemisphaericaexon
TCONS_00013076-exon-sc0000162-1575043694:106817..106917TCONS_00013076-exon-sc0000162-1575043694:106817..106917Clytia hemisphaericaexon
TCONS_00013076-exon-sc0000162-1491911889:107301..107445TCONS_00013076-exon-sc0000162-1491911889:107301..107445Clytia hemisphaericaexon
TCONS_00013076-exon-sc0000162-1510915933:107301..107445TCONS_00013076-exon-sc0000162-1510915933:107301..107445Clytia hemisphaericaexon
TCONS_00013076-exon-sc0000162-1575043694:107301..107445TCONS_00013076-exon-sc0000162-1575043694:107301..107445Clytia hemisphaericaexon
TCONS_00013076-exon-sc0000162-1491911889:107961..109062TCONS_00013076-exon-sc0000162-1491911889:107961..109062Clytia hemisphaericaexon
TCONS_00013076-exon-sc0000162-1510915933:107961..109062TCONS_00013076-exon-sc0000162-1510915933:107961..109062Clytia hemisphaericaexon
TCONS_00013076-exon-sc0000162-1575043694:107961..109062TCONS_00013076-exon-sc0000162-1575043694:107961..109062Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000162supercontigsc0000162:104867..109062 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.31933	1.43601	0.31727	0.551468	1.59413	1.43552	16.2953	16.1964	5.30529	6.64003	24.5881	3.94456	0.787212	0.000900539	1.03386	1.41024	0.957928	0.770525	1.09371	0.748488	1.29323	1.48548	0	0.805806	1.00696	0.433324	0.491581	0.270403	0.410183	0.186557
Blast
[Close]
BLAST of TCONS_00013076 vs. Swiss-Prot (Human)
Match: OTOF (Otoferlin OS=Homo sapiens GN=OTOF PE=1 SV=3)

HSP 1 Score: 84.3445 bits (207), Expect = 1.037e-16
Identity = 85/223 (38.12%), Postives = 127/223 (56.95%), Query Frame = 3 
Query:   87 HCRSTDGSGMFNWRFKYNFKYHQAKRQIV--RKETNVAFEKTALYYRPELVIECLENDLFS-HDVLGERRINLLKVPPYFGKPWGWSMGKYKELAKNENRTP--SLFNCSTIRGWWPLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNPVGEQRNEPHALSKPKRPQESMRLLIGPLRTLRIFV-NSHRGLICKXXXXXXXXXXXXXXXYAMPGAAVQKMFGA 737
            H  S  G G FNWR+ + F Y  A+ +IV  +KE+  ++++T       L ++  + D FS  D LG   ++L + P         +M    E+A  E   P  S+F    ++GWWPL   +   E    G+VE EL LLT EEA++NPVG  RNEP  L KP RP  S    + PL++ R F+ +++R L+ K++ LLLL++L+ LFLY++PG  V+K+ GA
Sbjct: 1779 HYHSLTGEGNFNWRYLFPFDYLAAEEKIVISKKESMFSWDETEYKIPARLTLQIWDADHFSADDFLGAIELDLNRFPRGAKTAKQCTM----EMATGEVDVPLVSIFKQKRVKGWWPLLARNENDEFELTGKVEAELHLLTAEEAEKNPVGLARNEPDPLEKPNRPDTSFIWFLNPLKSARYFLWHTYRWLLLKLLLLLLLLLLLALFLYSVPGYLVKKILGA 1997
The following BLAST results are available for this feature:
BLAST of TCONS_00013076 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
OTOF1.037e-1638.12Otoferlin OS=Homo sapiens GN=OTOF PE=1 SV=3[more]
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