TCONS_00013050 (transcript) - C. hemisphaerica

Overview
NameTCONS_00013050
Unique NameTCONS_00013050
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length657

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00013050 ID=TCONS_00013050|Name=TCONS_00013050|organism=Clytia hemisphaerica|type=transcript|length=657bp
GTTGTGTTAAGAAACTTACAGGAAAAACTTTATTCCCTAAGATATTGGAA
GTTTCATGCAATTATAGGTTATGGTCGTGTTAAGAAACTTacaggaaaaa
cttttttcactaagATATTGGAAGTTTCATGCAATTATAGGTTATGGTCG
TGTTAAAGAAACTTACAGGAAAAACTTTGTTCCCTAAGATATTGGAAGTT
TCATGCAATTATAGGTTATGGTCGTGTTAAGAAACTTacaggaaaaactt
ttttcactaagATATTGGAAGTTTCATGCAATTATAGGTTATGGTCGTGT
TAAGAAACTTACAGGAAAAACTTTCTTCTCTAAGATGTTGGAAGTTTCAT
GCCGGTAtaggttcgcaaggttgtgggttcaacccccagccgggacatac
caaagattcccaaaatgatacttgatgcctctctgcttgatgctcagcaa
ttaagagaaggatcatgGGTAAGTGgaacaatccagggagaaagagtggc
gccctcccctaccttcgggtagatagctaacgaaagaggagccttcgggt
cgcctccgactgtggtcacagacttacttacttataggTTATGATTTTGT
TAAGAAACTCTCAGGGATGGTTTTGCTCTCTTAGATGTTGGAAGTTTCGT
GCAATTG
Run BLAST on NCBI

transcript from alignment at sc0000161:200451..201107

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00013050 ID=TCONS_00013050|Name=TCONS_00013050|organism=Clytia hemisphaerica|type=transcript|length=657bp|location=Sequence derived from alignment at sc0000161:200451..201107 (Clytia hemisphaerica)
CAATTGCACGAAACTTCCAACATCTAAGAGAGCAAAACCATCCCTGAGAG
TTTCTTAACAAAATCATAAcctataagtaagtaagtctgtgaccacagtc
ggaggcgacccgaaggctcctctttcgttagctatctacccgaaggtagg
ggagggcgccactctttctccctggattgttcCACTTACCcatgatcctt
ctcttaattgctgagcatcaagcagagaggcatcaagtatcattttggga
atctttggtatgtcccggctgggggttgaacccacaaccttgcgaaccta
TACCGGCATGAAACTTCCAACATCTTAGAGAAGAAAGTTTTTCCTGTAAG
TTTCTTAACACGACCATAACCTATAATTGCATGAAACTTCCAATATctta
gtgaaaaaagtttttcctgtAAGTTTCTTAACACGACCATAACCTATAAT
TGCATGAAACTTCCAATATCTTAGGGAACAAAGTTTTTCCTGTAAGTTTC
TTTAACACGACCATAACCTATAATTGCATGAAACTTCCAATATcttagtg
aaaaaagtttttcctgtAAGTTTCTTAACACGACCATAACCTATAATTGC
ATGAAACTTCCAATATCTTAGGGAATAAAGTTTTTCCTGTAAGTTTCTTA
ACACAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007302XLOC_007302Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00013050-exon-sc0000161-1491911889:200451..201107TCONS_00013050-exon-sc0000161-1491911889:200451..201107Clytia hemisphaericaexon
TCONS_00013050-exon-sc0000161-1510915933:200451..201107TCONS_00013050-exon-sc0000161-1510915933:200451..201107Clytia hemisphaericaexon
TCONS_00013050-exon-sc0000161-1575043694:200451..201107TCONS_00013050-exon-sc0000161-1575043694:200451..201107Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000161supercontigsc0000161:200451..201107 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.163562	0.115395	0.656687	1.3106	0.109389	0	0.103695	0.290664	0	0.0860713	0.165119	0.17778	0.195906	0.173499	0	0.100138	0	0.224499	0	0.248045	0.0825943	0.122966	0.0914996	0	0	0	0	0.125718	0.112045	0.0993973
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00013050 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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