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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00012924 ID=TCONS_00012924|Name=TCONS_00012924|organism=Clytia hemisphaerica|type=transcript|length=1673bp
tcaagattAATTAAAAAGTATGGGGAAGTGCAAAAGCTGTGAAGAAAACG
TTTGCGAACGTAAATACGAAAATCGAGACAAGTGTCAAGACAAAAAGAAC
TGTACTTGTACATGTCAAGAATCAGAAGGCGAAACAGCTGTAAAAGAGGT
GTGTCAGCAGTTACCGGAggtttatttctttgtttttgtactGTTGCTAC
TGGCGGTGGTGCTTTAGCAGTAGCAGTTGCTGTTGGAGGAGCTGCCTTAG
CCGGTGGTGGTTCATCTATGGTAATTAACCCCCTTTCCAAAAAACATTCA
GGAGAAAGGATGACACCAAAAGATTATGCGACTGATGTTACCGTTGGTAC
CATAATTGGTGCTGCATCGGGGGGATTTGGGGTCGGTTCGTCAGCAATAA
CAGAAGGAGCAAAAGGTGCTGTTAAGCTTGGAGTCCGAGTTGCCAGTGGA
GCTGTTAGTGGAATCGTTGGAGGAGGAATATCAGAAACTGGAAGAAAAGT
TAAAGGGGAGGAAGTTAATGGCGAGACCGCCCTCAAATCAATGGCAATGG
GGATCATTACTGGAGGTATAGGTGGTGCCTCCGGTCATTTAGCAAGtaat
ttatctaaaattgaaCCTCTAAAAGATGCAATCACGAAGCCAGTGATTCG
AATTGCGACAGAGACTGTGACCAACACAAGTTTAGATGCTGGAATCCAGA
TTGCTGAAACAGGAAAAGTGGATCCTGCTAAACTTCTGCAAAATGCTGGT
GCTCAGTTGGTTACGTCAGTTGCTGGAGAATGTGGTCGACGCGCTGGTAA
GAACGTCGCCAAGCAAACACAGAAAAGAATGGTCCCTTCGTACAACGATG
AACAGATTAAAAAAGATGGCAACATCAAGGATGAGAAAACACGAGATTCA
GTTAAGGAACAGTTAGAAAAGGTTAATAAGATCCCGGATAAGGAAATATC
CGATTTGGTTTCAAACTCCGATCAAATCATACAGAAAAGGGACCAATTTG
ATTCGAAATTTGACCAGCTAACTGCTGATTTGAACCAGGCAGAGaagaca
aaaaaacaacatcaagcAGATAAATCATCGATTTTAGGAACAggagacaa
atcaaatttaaacGACAAGCAGCTGCAGGACCTAAAGCAATTGCAAAGTG
ATaacagaaaaaatgaaaaaaaaatcaaggctACCCGAAAGGAAATAACT
GCTCTAAACAAAAATGGCAAACCAGATCTTTTATTACTTGACAAACATGA
TAATTTGCACTGTTTAGGTGGTAAACACAAAGGTCGGGTTGCAGTAGATC
TCAACAACAACAATGGGAACAATGGACGTGGTACCGAACGGTTGCTATTA
GAAACGGCAAATGGAAAACCTGATTCTGCAGGTCAGTTTGTACTTGTTGC
ATATGTCCCTGATCATAATTACAATGATCCCAGAATCCCTCCACCAAAAA
ATGGACCCCATTTGGCTTTGCCTGCCTACCACATCGACATGACAGCCACA
CACCAATTGAGATCATGGAGCGAAGAACGTATCGAATGATCCATTAGCAA
TGAACAACTTTTCATATTCTTTTACTTGTAAACGAGTGGTAATTTTGAGG
TTTattttctaactttttataTAGGATGCTTCTCTTTACTAAAGTcagtc
tcaaaagtatgtgttCTGGTATT Run BLAST on NCBI protein sequence of TCONS_00012924-protein >TCONS_00012924-protein ID=TCONS_00012924-protein|Name=TCONS_00012924-protein|organism=Clytia hemisphaerica|type=polypeptide|length=475bp
MSRIRRRNSCKRGVSAVTGGLFLCFCTVATGGGALAVAVAVGGAALAGGG
SSMVINPLSKKHSGERMTPKDYATDVTVGTIIGAASGGFGVGSSAITEGA
KGAVKLGVRVASGAVSGIVGGGISETGRKVKGEEVNGETALKSMAMGIIT
GGIGGASGHLASNLSKIEPLKDAITKPVIRIATETVTNTSLDAGIQIAET
GKVDPAKLLQNAGAQLVTSVAGECGRRAGKNVAKQTQKRMVPSYNDEQIK
KDGNIKDEKTRDSVKEQLEKVNKIPDKEISDLVSNSDQIIQKRDQFDSKF
DQLTADLNQAEKTKKQHQADKSSILGTGDKSNLNDKQLQDLKQLQSDNRK
NEKKIKATRKEITALNKNGKPDLLLLDKHDNLHCLGGKHKGRVAVDLNNN
NGNNGRGTERLLLETANGKPDSAGQFVLVAYVPDHNYNDPRIPPPKNGPH
LALPAYHIDMTATHQLRSWSEERIE Run BLAST on NCBI transcript from alignment at sc0000157:165370..167042 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00012924 ID=TCONS_00012924|Name=TCONS_00012924|organism=Clytia hemisphaerica|type=transcript|length=1673bp|location=Sequence derived from alignment at sc0000157:165370..167042 (Clytia hemisphaerica)
AATACCAGaacacatacttttgagactgACTTTAGTAAAGAGAAGCATCC
TAtataaaaagttagaaaatAAACCTCAAAATTACCACTCGTTTACAAGT
AAAAGAATATGAAAAGTTGTTCATTGCTAATGGATCATTCGATACGTTCT
TCGCTCCATGATCTCAATTGGTGTGTGGCTGTCATGTCGATGTGGTAGGC
AGGCAAAGCCAAATGGGGTCCATTTTTTGGTGGAGGGATTCTGGGATCAT
TGTAATTATGATCAGGGACATATGCAACAAGTACAAACTGACCTGCAGAA
TCAGGTTTTCCATTTGCCGTTTCTAATAGCAACCGTTCGGTACCACGTCC
ATTGTTCCCATTGTTGTTGTTGAGATCTACTGCAACCCGACCTTTGTGTT
TACCACCTAAACAGTGCAAATTATCATGTTTGTCAAGTAATAAAAGATCT
GGTTTGCCATTTTTGTTTAGAGCAGTTATTTCCTTTCGGGTagccttgat
ttttttttcattttttctgttATCACTTTGCAATTGCTTTAGGTCCTGCA
GCTGCTTGTCgtttaaatttgatttgtctccTGTTCCTAAAATCGATGAT
TTATCTgcttgatgttgtttttttgtcttCTCTGCCTGGTTCAAATCAGC
AGTTAGCTGGTCAAATTTCGAATCAAATTGGTCCCTTTTCTGTATGATTT
GATCGGAGTTTGAAACCAAATCGGATATTTCCTTATCCGGGATCTTATTA
ACCTTTTCTAACTGTTCCTTAACTGAATCTCGTGTTTTCTCATCCTTGAT
GTTGCCATCTTTTTTAATCTGTTCATCGTTGTACGAAGGGACCATTCTTT
TCTGTGTTTGCTTGGCGACGTTCTTACCAGCGCGTCGACCACATTCTCCA
GCAACTGACGTAACCAACTGAGCACCAGCATTTTGCAGAAGTTTAGCAGG
ATCCACTTTTCCTGTTTCAGCAATCTGGATTCCAGCATCTAAACTTGTGT
TGGTCACAGTCTCTGTCGCAATTCGAATCACTGGCTTCGTGATTGCATCT
TTTAGAGGttcaattttagataaattaCTTGCTAAATGACCGGAGGCACC
ACCTATACCTCCAGTAATGATCCCCATTGCCATTGATTTGAGGGCGGTCT
CGCCATTAACTTCCTCCCCTTTAACTTTTCTTCCAGTTTCTGATATTCCT
CCTCCAACGATTCCACTAACAGCTCCACTGGCAACTCGGACTCCAAGCTT
AACAGCACCTTTTGCTCCTTCTGTTATTGCTGACGAACCGACCCCAAATC
CCCCCGATGCAGCACCAATTATGGTACCAACGGTAACATCAGTCGCATAA
TCTTTTGGTGTCATCCTTTCTCCTGAATGTTTTTTGGAAAGGGGGTTAAT
TACCATAGATGAACCACCACCGGCTAAGGCAGCTCCTCCAACAGCAACTG
CTACTGCTAAAGCACCACCGCCAGTAGCAACagtacaaaaacaaagaaat
aaaccTCCGGTAACTGCTGACACACCTCTTTTACAGCTGTTTCGCCTTCT
GATTCTTGACATGTACAAGTACAGTTCTTTTTGTCTTGACACTTGTCTCG
ATTTTCGTATTTACGTTCGCAAACGTTTTCTTCACAGCTTTTGCACTTCC
CCATACTTTTTAATTaatcttga Coding sequence (CDS) from alignment at sc0000157:165370..167042 >TCONS_00012924 ID=TCONS_00012924|Name=TCONS_00012924|organism=Clytia hemisphaerica|type=CDS|length=1428bp|location=Sequence derived from alignment at sc0000157:165370..167042 (Clytia hemisphaerica)
TCATTCGATACGTTCTTCGCTCCATGATCTCAATTGGTGTGTGGCTGTCA
TGTCGATGTGGTAGGCAGGCAAAGCCAAATGGGGTCCATTTTTTGGTGGA
GGGATTCTGGGATCATTGTAATTATGATCAGGGACATATGCAACAAGTAC
AAACTGACCTGCAGAATCAGGTTTTCCATTTGCCGTTTCTAATAGCAACC
GTTCGGTACCACGTCCATTGTTCCCATTGTTGTTGTTGAGATCTACTGCA
ACCCGACCTTTGTGTTTACCACCTAAACAGTGCAAATTATCATGTTTGTC
AAGTAATAAAAGATCTGGTTTGCCATTTTTGTTTAGAGCAGTTATTTCCT
TTCGGGTagccttgatttttttttcattttttctgttATCACTTTGCAAT
TGCTTTAGGTCCTGCAGCTGCTTGTCgtttaaatttgatttgtctccTGT
TCCTAAAATCGATGATTTATCTgcttgatgttgtttttttgtcttCTCTG
CCTGGTTCAAATCAGCAGTTAGCTGGTCAAATTTCGAATCAAATTGGTCC
CTTTTCTGTATGATTTGATCGGAGTTTGAAACCAAATCGGATATTTCCTT
ATCCGGGATCTTATTAACCTTTTCTAACTGTTCCTTAACTGAATCTCGTG
TTTTCTCATCCTTGATGTTGCCATCTTTTTTAATCTGTTCATCGTTGTAC
GAAGGGACCATTCTTTTCTGTGTTTGCTTGGCGACGTTCTTACCAGCGCG
TCGACCACATTCTCCAGCAACTGACGTAACCAACTGAGCACCAGCATTTT
GCAGAAGTTTAGCAGGATCCACTTTTCCTGTTTCAGCAATCTGGATTCCA
GCATCTAAACTTGTGTTGGTCACAGTCTCTGTCGCAATTCGAATCACTGG
CTTCGTGATTGCATCTTTTAGAGGttcaattttagataaattaCTTGCTA
AATGACCGGAGGCACCACCTATACCTCCAGTAATGATCCCCATTGCCATT
GATTTGAGGGCGGTCTCGCCATTAACTTCCTCCCCTTTAACTTTTCTTCC
AGTTTCTGATATTCCTCCTCCAACGATTCCACTAACAGCTCCACTGGCAA
CTCGGACTCCAAGCTTAACAGCACCTTTTGCTCCTTCTGTTATTGCTGAC
GAACCGACCCCAAATCCCCCCGATGCAGCACCAATTATGGTACCAACGGT
AACATCAGTCGCATAATCTTTTGGTGTCATCCTTTCTCCTGAATGTTTTT
TGGAAAGGGGGTTAATTACCATAGATGAACCACCACCGGCTAAGGCAGCT
CCTCCAACAGCAACTGCTACTGCTAAAGCACCACCGCCAGTAGCAACagt
acaaaaacaaagaaataaaccTCCGGTAACTGCTGACACACCTCTTTTAC
AGCTGTTTCGCCTTCTGATTCTTGACAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00012924-exon-sc0000157-1491911889:165370..167042 | TCONS_00012924-exon-sc0000157-1491911889:165370..167042 | Clytia hemisphaerica | exon |
| TCONS_00012924-exon-sc0000157-1510915933:165370..167042 | TCONS_00012924-exon-sc0000157-1510915933:165370..167042 | Clytia hemisphaerica | exon |
| TCONS_00012924-exon-sc0000157-1575043694:165370..167042 | TCONS_00012924-exon-sc0000157-1575043694:165370..167042 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000157 | supercontig | sc0000157:165370..167042 . |
Blast
The following BLAST results are available for this feature:
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