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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00012914 ID=TCONS_00012914|Name=TCONS_00012914|organism=Clytia hemisphaerica|type=transcript|length=609bp
gattgaGAATGAGTAATGTTTGCTTCGTCATTCCATCACTGTATTACTTG
TTGTTGTAATGGGATGCAGGTCCACCAAACCCTTGAATAATTCAGTTTCT
GATGACGTAGGTGAAAAATCCATCATCAAAGATCTTGGTTCAGAGTATGC
AGATGACAATGGTAATATGAATTCTCAACGTAATATGAAACCTTTCAATG
GTGGCAAAACACCAAATGGGAAAATGTTTATGCAGAAAGACTTAAAAGAA
CTTGGAAGgaAATCTGCTAGAGGAAATTCGAAGAATGCCCCGTACAGCCA
ATCACAATTAGATTTCTTTGAAATGTTGGACAAGAAGATTATGGAGGTAT
TATTCTTATTGTTCTGTTGTTTTTAGCTCGGTTGACTTTTTGCCCTGTTT
ATTCTAATTGTAGAGTGGGCAAAAAGAAGGTaaaaagttggcagttaaaa
tactacttgaaaaagattgaaaatgtcATTGCGTTGACGTCAAaagcatt
gactttagacagcaaACTTTGTGTCCATTTTAATTCACAATAAGATTAAG
TTAGGTCGAAAAGCGGATCGTCTAAACCAGAGCTTAATGATTTATGGTCG
AGATACGAG Run BLAST on NCBI transcript from alignment at sc0000157:489631..497490- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00012914 ID=TCONS_00012914|Name=TCONS_00012914|organism=Clytia hemisphaerica|type=transcript|length=7860bp|location=Sequence derived from alignment at sc0000157:489631..497490- (Clytia hemisphaerica)
GATTGAGAATGAGTAATGTTTGCTTCGTCATTCCATCACTGTATTACTTG
TTGTTGTAATGGGATGCAGGTCCACCAAACCCTTGAATAATTCAGTTTCT
GATGACGTAGGTGAAAAATCCATCATCAAAGGTAATTCTGAGTCTACTTC
TTTTCATTATCCAATATTATCCATTTTTATTCCAAATTTTAACAGTAACG
TAGACAGTAGGGGCGCAAAATTNCATTATCCAATATTATCCATTTTTATT
CCAAATTTTAACAGTAACGTAGACAGTAGGGGCGCAAAATTTGTGTGGGA
GAGAAGATTTTTATGACACAGTAATTATCTATTCATAATGTTAACAGATT
TTTGCGCCCCTCCTGTCTACGTTACTGTTTTAGATATAAAGTTTTGTAAT
CTTGTAGTTTTACCAACTCTAGCTAATTTTTTGAAATTTTTCTTTTTATC
GAGAGATCTCTGGCCCCTTGAAGATCGAATTACAGTAGACCCCTGGTTAT
TCAAAGATCCAACTGGGATAAGAATTTACTTCGAATATCCGAAAGGTCGA
ATAATTGAAGTTCAAATAACCGAGAGTATTTTTGTCTTAGTTGGGTGAGA
GATCAAAGGGGGACACCAACTCACTTCGAATAACCGAATTATTCGAATAA
GCGCAGGTTCGAATAATCGGGAGTCTGCGACTGTACAAATTTTCGGGGTA
GAACTAGCGAGCACCTCACTAAAAACCGGGATTTCTCATCTCGTTTCTTA
GTTAGTTCCACTTTGACGATTTTGGAAAAATAGAAGCCTTTCAAGTGTTT
TGACGCATATTCGTTTCTTTGCTACTGCAAACTTGCTTCGAACGTTTAAA
GTGACGTCAAAAAAGTGCGTTACGTTAATTACGTAGAAAAAAGCTGGTGA
CGTCTAGTATAGGCTTGGGCAGAACCGGATAAATATCTAAATTTTGCCAG
ATTACGTACGTACCCACGGTCTTTTTCAGATAGAATGCCCCAATATCAGC
CTCTTAGCATAGTTAGATATTTCCTCACAGGAAAAAAAGTCCCAACTGTN
CGAGATTTTATCATTAGTTTTTTCTGATTTTTTGCTCAAAGATGCGTATT
AACAATGCCCAAAACATGGCCTAGTCCGATTTTTGGGAAAATTTTTTTTC
CGGGTGGAAATGCCGGAAATATGCCGGAAATCGCCGTTTTTCTGGATTTT
CATTGGACTTTTTCCATATAATTGGTTGTTTTTTTCATTCAAAAACATTA
TTAATAGCAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATCGCCGTTTTTCTGG
ATTTTCATTGGACTTTTTCCATATAATTGGTTGTTTTTTTCATTCAAAAA
CATTATTAATAGCAATGCCCACCATCACGCATGTTTCAATTTTCAAAAAA
ATAGATTTTTGAAGCCGGAACTTTCTAAAAATCGCCGGAACAGCCGATTT
TCGCCGGAATAACGGTATTTCTTGAATTTCTTGAGCTGTACTTTATATTC
TTTCATGAAATTTTGCACAATGATGCAAAATGTCAATACCTAAATTGTGC
CGGAGCCCGATTTTCGAAAAACATCTTTTTTCGGCCGAAAATGCCGGAAA
TATGCCGGAAAAACTGTTTTTTTGGCATTTTCTCGAGATTTTATCATTAG
TTTTTTCTGATTTTTTGCTCAAATATGCGTGTTAACAATGCCCTAAACAT
GGCCGAGTCCGATTTTTCAGAAAAAATTTTTTCCGGTGGAAAATGCCTGA
AATATGCCGGAAATCGCCGTTTTTCTAGATTTTCATTGGACTTTTCCTTA
TAATTGGTTGTTTTTTCATTCAAAAACATTATTAATAGCAATGCCCACCA
TCGAGCATGTTTCAATTTTCAATAAAATTGATTTTTGAAGCCGAAACTAT
TTTAAAAGTCGCCGGAATAACCTTTTTTCGCCGGAAAGACAGTATTTCTT
GAATTTCTTTATTTTTGCAGATTTTCATTGGATTTTTTCCTTTATTTCTA
TATTTTTCACTACACAAAAACATTATTGATAACAATGCTCACCATCAAGC
ATGATTCAATTATTTTTTTTCATTTTTCTTTTCACATTGCTATCTAACTT
TCATCATCAGGTAGGTCCATTCAGCATATAGCTTGTTTTTTCTTTTTTCA
GATTCAGAATGAGTAATGTTTGCTTTGTCATTCCATCACTGTATTACTTG
TTGTTGTAATGGGATGCAGGTCCACCAAACCCTTGAATAATTCAGTTTCT
GATGACGTAGGTGAAAAATCCATCATCAAAGGTAATTCTGAGTCTACTTC
TTTTCATTATCCAATATTATCCATTTTTATTCCAAATTTTAACAGTAACG
TAGACAGTAGGGGCGCAANTATTGGATTATTTTTTTCCGAATTTTAGATA
TAAAGTTTCATAAAGCAGTTTACAGTTTTACTAACTTCAGCTAATTTTTT
TGAATTTTTTTTAACCTTAATGGGATGGGCTTTTTTGAAATAATTGAGGC
AGTTCAGTTGAGCGTAATAAACAAAGAATTTTTACTTTTTGAAGGAAGAA
CTAACTTTGGAGATAATAAAGGACTGAGGATCCCCTGTTTGCTTTAATTC
TCTGCACCGAAGGAGAATATTGAACTTTTGAAGATTGCTTGAAGAGGGTA
AATGCAAATAGCCATACATATTGAAACCTGTTTTAATCGTAGACGATCAA
TGTTTTCACTCGACGATTTCCCAATGAGAAACATTTGAATAACTTAGCCT
AATAATTTAGCCTATAATTGGCCCGAAGGGGGATAGAAATCACTTCGAAT
AACTGAAAGTTCGAATAATTGAAGTTAAAATGACCGAGAGTGTTTTTGTC
TGAGTTGGGTAAGCAGATCCAACGGGGAACACCAACTCACTTCGAATAAC
CGAATTATTGCATAAGTGCAGGTTCGAATAATTGGGAGTCTACGACTGTA
CAAATTTTCGGGGCAGAACTAGCGAGCACCTCACTAAAAACTGGGATTTT
TCATCTCGTTTCTTAGAGAGTTCCACTTTGACGATTTTCGAAAAATAGAA
GGCTTTCAAGTGTTTTGACGCAAATTCATTTCTTTGCTACTGCAGAAGCT
TTTAAAGTTAAAAGTGACGTCAAAAAATCGAATGTTTGGAGCCCGAAAAC
CTGCGCTCCAAACATTCGAAAAAGTCGCAAAGTGGAATAGGCGTTGAGTG
CGTAGAAAAAAAGCGGGTGACGTCTAGTATAGGTTAGGGCAGAACCGGAT
AAAGATCTAAACTTTGCTAGATTCCGTTCGTACCCACGGTCTTTTTCAGA
TAGAATGCCCCAATATCAGCCTCTTAGCATAGTTAGATATTTCCTCACAG
GAAAAAAAGTCCCAACTGTTTTGCTGACCTGTCTAAAACCTTGTTTCGTT
GAAAGGTAATTGCCCGTTGGGCTCAGGTAGAAGTGCAAGCTACAGTTGAT
CATCTTTAATTCGATCTTCAAGGGACAAAACTTTTAGAAAGATTTGGATT
ACGTAGAGTGCTTTATATGATATTCCAGATGAGTGGGACCCAATGTTTTA
GTTCGAATTACAGAAAGATTCGAATAATAGAGATTGAAATAAGAGGGAGT
TGCCTGTAGCACTAATATTAAAGGGATAATCAGATGGTTTGTGATATTTC
GCATATGGGATCCTTCTATTGTCCTGAGCAAAATCTCACGGATATTTAAG
TTTGAAGTTTTTGGCCTTTAAGCTTTTTTCACATGTACGTAAAGTTTTAC
TTAAGAACTTACGGAAAATCGTTCGTAAGGGTGTCTTTTGGGAATTTCCT
CGACATCATGTAGAGTATTTGTTAATTAAAAGGGTCTTACGTGACTTTTC
CTTCCGTTCAAAACTTTTTGAACGTAAGCAAACTCTACATAAGGCCTTAA
AACACTACGTAAGCTTAGGGAAATTCCCCACCCTTCAAGGTCTTTTAAGT
AAAATTTTACGTGCATGTGAAAAAAGCTTTAGGATGAAAACAATAGAATT
TCAACGTAAGAACCGTGTAAGAACCCATTGTCAAAAATTTCAAATTTTGA
TATCTCGATTTTGGAAAATACTTTGAGGTTTTACTAAGGACAACAGAAGG
TTTCTTTAATTTAAATATCTCAAACCATCTGATTATCCCTTTAATGTGTT
TCTTGGGTTATAATGTTCTTCAATTTTTGTTGCGATTTGTTTTCATTAGA
TCTTGGTTCAGAGTATGCAGATGACAATGGTAATATGAATTCTCAACGTA
ATATGAAACCTTTCAATGGTGGCAAAACACCAAATGGGAAAATGTTTATG
CAGAAAGACTTAAAAGAACTTGGAAGGTATCATTCAGTTAAATTCATTCG
TTAAAGAAACTCATTTTCTTTTTTTGTCAGCATTTTCGGATATTAAAACT
TTAGTCAATTCGCCGCAATTAGTTCTCGCCGCAATAAGCCATCTTATGGT
TATTTGTAATTGTTTTAACGTCAATTCGGTTTCTCTTAATCTCTTACCCG
AGGAACGATATATAGCTACTAACACCCGCTTTCATAGATTTGAGCGAATT
GAGATATTTATTGATTCATGATAGCATATATGATTCGCTAGTTTTTTTGG
ACCCACCTCGGAGGTCCTTTAAAGTAACTTGATTTTTTGCACAATGATGT
AAAATGGTAATGCGCAAAATGTGACGGAGCCCGATTTTCGAGAAAAAAAA
TATAAAACCGTTTTTACAGATTTTCATTGGATTTCTTCTTTATATTTCTA
TGTTTTTCCACACAAAAACATTATTGATAACAATGCCCACCATCAAGCAT
GATTCAATTGTCAATAAAACTGATTTTAGGAGCTGGAACTTTCTAAAAAT
CGCCGCAACAGCCGAGAATCGGCGGAAAAACGGTTTCTCTTGAATTTCTT
GAGCTGTGTTTTATATTTTTTCATAAAATTTTGCACACTAATGCAAAATG
GCAATACCTAAAATGTGACGGAGACTGATATTTGAAGAAAAAAAATTTCC
GGCCAAAAATGCCGGAAATGTGCCGGAATGACCGTTTTTTTGGCATTTTC
TTGAGATTTCATCATTGCTTAAAGATGTAAATTAGCAACACCTAAAATAT
GACCGAGTCCAATTTTTCGAAGAAAATTGGTTTTGCAGATTTTCATTGAA
TTTTTTCGTATTCTATCTTGGTTTTCTCAAACAAAAACATTGTTGATAAC
AGTGCCCACCATCAAGCGTGATTCAATTGTCAATAAAACTGATTTTTGAA
GCCGGAGGAACTTGTTTTTGCCGTATGAAACAAAAATTATTATGTAGTTA
TAGTTTGTAACAAATTAATTGAAACAATGGATCATTGCAACTCAAAATAT
CATACATTTCTTTTATAAATCTTTTTTTGAATTTTGCCTACACTTGCCTG
AAAACTATTGACACTTTATAGCTAATAAACTATTTCTCGTAATTTTGTCG
AATTTTGATGACCATTTGTCATGTCATGACCATTTTTCAGTCCCTATGCG
TTTCTTATTTTACGTCCTTTTCTATTTCCATTCTATATTTGTCATTAGGT
AGGTCCAATATGCATTATGCTTGTCTTCTTACAGTTGAATTCTTAGCATC
AAGAATATCAGTTATGGTTCTATATCGCTCTGAGAAAAAATGGAGCTATT
CTGTTGTTCGGCTCTAGTACTTAAGTAATTTCTTACCAATATATAATGGC
TTCGTCTTAAAGCTGGTATCCACTTTCGCGTGAAATGGGCGATAGTTTTT
TTCTTACCTGAAGAAAAGATTACGTCTTAAAAAAGTTTCGCGCGAACAAA
AAAAAAGTTGAAGGAAGTTCTACTTTTTGTATCCATTACTTCAATTTCGA
CCAATGGAATTGCTTCATTTTTCAACCGACCAATGACCTTACAAAAACGT
CAAAAAGTTTTCGCTCATGTTGCGCGAAAGTAGAAACCAGCCTTTATATC
GGAACCACTGATCTCTAACTACTTGACTAAATCGGGCTTCCCGTATAAAA
GGAAGCGTGTCCAGTTTTAAAGCCATCTCTCTTCAATTCTGTTCGTAAAC
AGCGCGATTCGAATGTTCGAATATTCAAAAATCCGAGATAAAACAGAAAA
CAACACGGTGGTCTAGTCGACTTCAACATTGGGCACACTTCCACGGGAAG
TCAATGATCAGTAGTTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNTATTTTTTTTGTATTTTGACCAGTTATGTCTTATG
TGTTTCATTGTTTCAATGTTCACTGATTAGTTTGATAACCAGGTAGGTCC
ATAAAAATATCGCTTGTTATTGTTTTATTTTATAGGAAATCTGCTAGAGG
AAATTCGAAGAATGCGTAAGGGACTTTTTATATCTATTTTAATATCACGT
AGGGAGGCCCGTGTCTGATACCCACCGTGTCGCTACGATTCACTTGGCAA
GTGAATACACCTTTGGCCGACCCATCCCTTTCNTCTGCTAGAGGAAATTC
GAAGAATGCGTAAGGGACTTTTTATATCTATTTTAATATCACGTAGGGAG
GCCCGTGTCTGATACCCACCGTGTCACTACGATTCACTTGGCAAGTGAAT
ACACCTTTGGCCGACCCATCCCATGTGAAAGTTTGTAACTCAACTGTATG
GGTTCACCTACAATTCAATTTCTATCGAAATCATGCTTTCATCAGGCTTG
AATAGGTGACTTTCAAAATTAAATTCTCGTTTAATTTAGAAATAAACTTT
TATTGCTAAAATAAAACCCGTCAATTTTCAGCGAAATGGCCTTTATTCAT
TCGTCACTAAGTCTTTCTGATTTCTTTTCACACTTCTAGCCCGTACAGCC
AATCACAATTAGATTTCTTTGAAATGTTGGACAAGAAGATTATGGAGGTA
TTATTCTTATTGTTCTGTTGTTTTTAGCTCGGTTGACTTTTTGCCCTGTT
TATTCTAATTGTAGAGTGGGCAAAAAGAAGGTAAAAAGTTGGCAGTTAAA
ATACTACTTGAAAAAGATTGAAAATGTCATTGCGTTGACGTCAAAAGCAT
TGACTTTAGACAGCAAACTTTGTGTCCATTTTAATTCACAATAAGATTAA
GTTAGGTCGAAAAGCGGATCGTCTAAACCAGAGCTTAATGATTTATGGTC
GAGATACGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00012914-exon-sc0000157-1575043694:497360..497490 | TCONS_00012914-exon-sc0000157-1575043694:497360..497490 | Clytia hemisphaerica | exon |
| TCONS_00012914-exon-sc0000157-1575043694:493115..493241 | TCONS_00012914-exon-sc0000157-1575043694:493115..493241 | Clytia hemisphaerica | exon |
| TCONS_00012914-exon-sc0000157-1575043694:490426..490455 | TCONS_00012914-exon-sc0000157-1575043694:490426..490455 | Clytia hemisphaerica | exon |
| TCONS_00012914-exon-sc0000157-1575043694:489631..489951 | TCONS_00012914-exon-sc0000157-1575043694:489631..489951 | Clytia hemisphaerica | exon |
| TCONS_00012914-exon-sc0000157-1510915933:497360..497490 | TCONS_00012914-exon-sc0000157-1510915933:497360..497490 | Clytia hemisphaerica | exon |
| TCONS_00012914-exon-sc0000157-1510915933:493115..493241 | TCONS_00012914-exon-sc0000157-1510915933:493115..493241 | Clytia hemisphaerica | exon |
| TCONS_00012914-exon-sc0000157-1510915933:490426..490455 | TCONS_00012914-exon-sc0000157-1510915933:490426..490455 | Clytia hemisphaerica | exon |
| TCONS_00012914-exon-sc0000157-1510915933:489631..489951 | TCONS_00012914-exon-sc0000157-1510915933:489631..489951 | Clytia hemisphaerica | exon |
| TCONS_00012914-exon-sc0000157-1491911889:497360..497490 | TCONS_00012914-exon-sc0000157-1491911889:497360..497490 | Clytia hemisphaerica | exon |
| TCONS_00012914-exon-sc0000157-1491911889:493115..493241 | TCONS_00012914-exon-sc0000157-1491911889:493115..493241 | Clytia hemisphaerica | exon |
| TCONS_00012914-exon-sc0000157-1491911889:490426..490455 | TCONS_00012914-exon-sc0000157-1491911889:490426..490455 | Clytia hemisphaerica | exon |
| TCONS_00012914-exon-sc0000157-1491911889:489631..489951 | TCONS_00012914-exon-sc0000157-1491911889:489631..489951 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000157 | supercontig | sc0000157:489631..497490 - |
Blast
The following BLAST results are available for this feature:
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