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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00012907 ID=TCONS_00012907|Name=TCONS_00012907|organism=Clytia hemisphaerica|type=transcript|length=5569bpRun BLAST on NCBI protein sequence of TCONS_00012907-protein >TCONS_00012907-protein ID=TCONS_00012907-protein|Name=TCONS_00012907-protein|organism=Clytia hemisphaerica|type=polypeptide|length=825bp MKTFLLGVLLLGVQTLLAGTEDVYNIYEEKESKCLHVVDDGNNFNITFQERun BLAST on NCBI transcript from alignment at sc0000157:311296..326141- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00012907 ID=TCONS_00012907|Name=TCONS_00012907|organism=Clytia hemisphaerica|type=transcript|length=14846bp|location=Sequence derived from alignment at sc0000157:311296..326141- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000157:311296..326141- >TCONS_00012907 ID=TCONS_00012907|Name=TCONS_00012907|organism=Clytia hemisphaerica|type=CDS|length=47082bp|location=Sequence derived from alignment at sc0000157:311296..326141- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00012907 vs. Swiss-Prot (Human)
Match: AGRD1 (Adhesion G-protein coupled receptor D1 OS=Homo sapiens GN=ADGRD1 PE=1 SV=1) HSP 1 Score: 156.762 bits (395), Expect = 1.865e-38 Identity = 121/400 (30.25%), Postives = 198/400 (49.50%), Query Frame = 2
Query: 1598 AMKNTSKGTLLTNNVISTRVSPKIRDLTKENEKITLRFPIMATGNLTREEMKRR--------IQCVYWDYN--ENTWQKDGCRLVLPPVSMDGNSSTNENGVSSVTCECDHLTDFSILLSVVNPDQLGWTDTDKENFHFITTTGCXXXXXXXXXXXXXXXTRRKLR--KNQRYQIHINLCFSXXXXXXXXXXSEKEGKSKSHCMVISIMMFYFFLASFFWMLCEAIFVWRALITIF-TENDRLGYYLLFGWGAPMGVVLATGLVSRDKLITDKTCWLSWEDSTIYAFALPXXXXXXXXXXXXXXXXXXXSKHARETKR-----GRIRSLARMVLILLPVFGLTWIFGVLSFNEETKIFRYIFATLNSFQGFLIFVCYIQASREVRKELRKAT--WDQYSS 2737
AM + T+++IS VSP +N + + LTR++ + C + D++ E W GC L T N SV C C HLT+F+IL+ VV P +L + I+ GC +S++ L+ ++ + +NQRY IH NL F++++ ++LL+S + + C V+++++ YFFL++F WML E + ++ +I +F +E+ + YY GWG P+ + + + + D T CWLS I+AF P L +IV+N IL V S+ + + + + A+ V +LLP+ G +W+FGVL+ N +F+Y+FATLNS QG IF+ + + EVR + T W SS
Sbjct: 448 AMHHQDCLLFATSHLISLEVSPP--PTLSQNLSGSPLITVHLKHRLTRKQHSEATNSSNRVFVYCAFLDFSSGEGVWSNHGCAL------------TRGNLTYSV-CRCTHLTNFAILMQVV-PLELA--RGHQVALSSISYVGCSLSVLCLVATLVTFAVLSSVSTIRNQRYHIHANLSFAVLVAQVLLLISFRLEPGTTPCQVMAVLLHYFFLSAFAWMLVEGLHLYSMVIKVFGSEDSKHRYYYGMGWGFPLLICIISLSFAMDSYGTSNNCWLSLASGAIWAFVAPALFVIVVNIGILIAVTRVISQISADNYKIHGDPSAFKLTAKAVAVLLPILGTSWVFGVLAVNGCAVVFQYMFATLNSLQGLFIFLFHCLLNSEVRAAFKHKTKVWSLTSS 829 The following BLAST results are available for this feature:
BLAST of TCONS_00012907 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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