TCONS_00012890 (transcript) - C. hemisphaerica

Overview
NameTCONS_00012890
Unique NameTCONS_00012890
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length554

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00012890 ID=TCONS_00012890|Name=TCONS_00012890|organism=Clytia hemisphaerica|type=transcript|length=554bp
AATCACTAGTCAAGTCACATCACTGCTCTTTCAAATGCTCTGCTGTGATT
TCACTTGAACATATTTTAGTTGTAATTAAATTTCATTTCTGAATGATGCA
ATATTGATTGGTCAGCATCAGATGTCTGAGTGGTTTGATCGGCCAGGGTG
AGGTTGGAATATTGACTGTATTTTATATTGTTCACCTTTATTTACTTCCA
GATGATGTCATTTGAACCTTATTGAACTGATTTTTGTAATTGGACCATCA
AATTCTTTTGAACAACGGATGGTCAACTACCAAACCAGatcgaacaccta
tcgaacTTTACCGCAAAAACCTCTTGATTAATTCGATTTAGTTGTATTAC
AGGATGCACGTGCATATAGTTGGACATGTCCCCGATAATTTACCAACACA
ATTACcaccaaaaaaattaatcacACTAAACAAAACAACCAAGGAGAATG
TTATTCACGTAACCACAGCAATGTAAAAACTTGTTTACTTCAACACAACA
ATATAATATCGAACTATTTGCCTCATTACTTATTCGCACTGATGAAAATT
TAGA
Run BLAST on NCBI

transcript from alignment at sc0000157:509830..514674+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00012890 ID=TCONS_00012890|Name=TCONS_00012890|organism=Clytia hemisphaerica|type=transcript|length=4845bp|location=Sequence derived from alignment at sc0000157:509830..514674+ (Clytia hemisphaerica)
AATCACTAGTCAAGTCACATCACTGCTCTTTCAAATGCTCTGCTGTGATT
TCACTTGAACATATTTTAGTTGTAATTAAATTTCATTTCTGAATGATGCA
ATATTGATTGGTCAGCATCAGATGTCTGAGTGGTTTGATCGGCCAGGGTG
AGGTTGGAATATTGACTGTATTTTATATTGTTCACCTTTATTTACTTCCA
GATGATGTCATTTGAACCTTATTGAACTGATTTTTGTAATTGGACCATCA
AATTCTTTTGAACAACGGATGGTCAACTACCAAACCAGatcgaacaccta
tcgaacTTTACCGCAAAAACCTCTTGATTAATTCGATTTAGTTGTATTAC
AGTTAGGATATTAAAAATTAATTGTAATTGATTTGATTGCATGATCAGAG
GTGCCGTTGAAAGCCTCATGCTTCAACATGtagggcagaaaacaatcata
aTCTGGATTTCAGGTGATCAAAATCAAACACATCGAACTGCGATTGAATA
AatatcgaaccaatcgaactgtTATCAGATTACTATCGAACAGTAATGGG
CTGTTCCAGTTTTAGTTTATTATCCTCTAGTGGACATGGAATTTCCTtag
caaaaagtttagaaaaagtTGCAGAATTTCTGttgtaaaatcccaaaaat
tcctaaaaattcatggaattccgatacttcGGCCACAAAATTGGGTGAAA
TTTATGGAATTCTGATATCTTTTGCTTAAAAGTTGGCTGAAGTTACTTAA
CAAatgtgatttttaaaatttgtgtCATCCACTAGGGGATAATATGCTTT
TTTTCTGCAACAGCCCAATGGAACTTTACCAGAATTTCTTGGTTCAATTA
CTCTTCAATTTGGTTTGGTAATTATGTGGCGAAAATGGGCCTACCTACAG
GCCTaatgttgtttgtttttttttcaaatctctttAATCACCAAAATACT
TggtataataaaataaaaaatataaaatatctcTGTTTTGTTTACAATGT
TACACAGGTtatacatttttctttcttttttttatatatacatATGGGTG
TTGTGTGCCCTATAGAAAAATCACTGAGCGGATGTAGATATCAGGGGAAT
CCccttcgaaaaaataaaaaataaaaattgtacGCGGACCTAGATGGAAG
CATAAGAGAATAATTTGTTGTATAAAAATACAGTTAGCTAGATTGAAATG
AACACCTAccatgaagtcgggtaacttgcatcagtggaggctaacatgca
tagccctcaaatgaatgagcTGGCTGttccttaaaatacaaactttaagt
taaatcaaaacaaaaatggtagagtagagctgggAGCTGAGCTGCGtaat
tcatttgttttgaaattttgctgcaataTCATTATGCAATTGATTTATGC
ATGACattacttttattattattattttatttaaattgACCAGAAAATGT
TATCAAACAATAACACACTGTGCAGCTACCCTGTTTGATTATGTCACCCT
TAACCAGGAGGAAATATAGGAGTGAAAGAATCCCTTATTGCAAataattt
gatcgaaaataAAAGAAGATTTAAGTGGTCATTCACTTTCAGATTTTTCA
GATAGGACCTTTTCGGATTCCTCGACTTAATTTCTTGGAAAACACTGAAT
CCTTTTAGTAAAGCAGCTCAGGTTCTATAAACAAAATTATACACTGTATA
AAATTCTATATTATATTGGCAGTAAAGCTGACGTAGACCTACAGgctaag
aaacaaaaaagtaaaatgagtACTGAGCAACGGTGTGACTTAATTCATAG
TGAAATAGGAGGCAAATAAAGGACAAGGAATCCTTTGTAAGCCGTGCCTT
TCTAGTTTACTttcattattcttttactgTTTAGGGATGCACGTGCATAT
AGTTAGACATGTCCCCGATAGTTTACCAACACAATTACcaccaaaaaaat
taatcacACTAAACAAAACAACCATTTTTATGTTATTCACGTAATCACAG
CAATGTAAAAACTTGTTTACTTCAACACAACAATATAATATCGAACTATT
TGCCTTATTACTTATTCGCACtgatgaaaatttagagaatgATTTATTCC
TTAACCATAtctttattaccaaaataattttctatatAATAGCTAAGGAC
ACCATGTAATGACCTGATTTACTTTGAANacacctttcccgtaattcaaa
tttctcagaaatggcccgggcaaatgtgcgctccaccgttgtgtataaaa
ttgtttgggaggtaaaaaacgcgtttttgcctgcgaggggttagggaaag
tgggatttgagcctctaacttttgacagcgatcttcttttggcaaaatat
tttcagggtggtataacatcatgaatagattgaacatactaaaatttgag
gggattttgttcgacagaacttaagaaaagctcaaaaaacctactttccc
taagggaacgcaggcaaaaacgggtttgtttacctccagggaccaaacgg
tggagagcatcaaaataatgcgcgcgcattagttttaggaattacgggaa
aggtgtattgaatatggatataaataatttgaaatcacctcacatgtaca
attaaaatttttcttgaacttggagattttcttccccgcgtgcattttaa
aacgtggaaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNgttatctgagatttaaagcattttgaa
atcttttgaggacatcaattattattttaacatttgtaaaggaaatattt
atccgcatctttgcggctcttgtatTGGCAGTAAAGCTGACGTAGACCTA
CAGgctaagaaacaaaaaattaaaatgagtaCTGAGCAACGGTGTGACTT
AATTCATAGGAGGCAAATAAAGATTAAAGGACAAGGAATCCTTTGTAAGC
CGTGCTTTTCTAGTTTACTTTCATTATTCTCTTACTGTTCAGGGATGCAC
GTGCATATAGTTGGACATGTCCCCGATAATTTACCAACACAATTACcacc
aaaaaaattaatcacACTAAACAAAACAACCAAGGAGAATGTTATTCACG
TAACCACAGCAATGTAAAAACTTGTTTACTTCAACACAACAATATAATAT
CGAACTATTTGCCTCATTACTTATTCGCACTGATGAAAATTTAGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007231XLOC_007231Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00012890-exon-sc0000157-1491911889:509830..510180TCONS_00012890-exon-sc0000157-1491911889:509830..510180Clytia hemisphaericaexon
TCONS_00012890-exon-sc0000157-1510915933:509830..510180TCONS_00012890-exon-sc0000157-1510915933:509830..510180Clytia hemisphaericaexon
TCONS_00012890-exon-sc0000157-1575043694:509830..510180TCONS_00012890-exon-sc0000157-1575043694:509830..510180Clytia hemisphaericaexon
TCONS_00012890-exon-sc0000157-1491911889:514472..514674TCONS_00012890-exon-sc0000157-1491911889:514472..514674Clytia hemisphaericaexon
TCONS_00012890-exon-sc0000157-1510915933:514472..514674TCONS_00012890-exon-sc0000157-1510915933:514472..514674Clytia hemisphaericaexon
TCONS_00012890-exon-sc0000157-1575043694:514472..514674TCONS_00012890-exon-sc0000157-1575043694:514472..514674Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000157supercontigsc0000157:509830..514674 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.224795	0	0.365306	0.369349	0.372914	0.531933	0	0.400995	0.275816	0	1.13475	0.511785	0	0.312578	0	0	0.361934	0	0	1.58633	1.29626	0.389472	0.564852	0.32404	0.125726	0.00320002	0.0574828	0.818319	0.700067
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00012890 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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