TCONS_00012845 (transcript) - C. hemisphaerica

Overview
NameTCONS_00012845
Unique NameTCONS_00012845
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1657

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00012845 ID=TCONS_00012845|Name=TCONS_00012845|organism=Clytia hemisphaerica|type=transcript|length=1657bp
ttttggtttttgttatgatccagcactcctaaatactcctccgtatgggt
gtttgtgccaatgctagatcagcatttcataaatataccatgcgtcgttc
cctttaaGCAAATAAAAACCACTCTTTTATCTTTAATCTCCTGATGATGA
CATGATTGAATTTCTTATTTAGAATACCTCCAACATATCATAACAATGGG
TCAATCTCAATACAATCTATTGTTAATGGAAATCAAAAGACATATCTGGG
CAGTGTCATTTATTTAACTCATTTCTGGTCAGATTAGCAACTAGCTAGGA
GGTACTCTGCAAACAGAAATCAATCAGTTACACAGCATTCATCACAAtgg
caaaaatcagtgaagacGAACTCGACGACATTAAGGAGAGATACGAACTC
TTCGATAAGAAAGGAGATGGAAAAATCGATGCAGCACAAATTATTGATGT
TCTTCGTGCTTGTGGACAAAACCCACTCANGATCGATGCTGCACAAATTA
TTGATGTTCTTCGTGCTTGTGGACAAAACCCACTCAAACCCGATGTCGAT
AAGATCATCAAAGAATCTGAATTAGACGGCAAACGTGTTGAATTAGAAGT
TTTCTGTGGTATTTACGAACAAATCTCGAAAGCACCTGGACAAGCTTGTT
TTGAAGATATGGTTGAAGCTTTCAAAACATACGACAAAGAATCAAACGGT
TCTATTTCATCGGCACAAATTCGTCAACTTCTGATCAACTTGGGAGATAC
GTTGACTGAACAAGAAGCTGATATCATCCTAGCGCCACATGAAGATGACC
AGAGCAATATCAGTTATCAACAACTCATCAAATCTCTTGTTggagaaaag
aaataaatagaTTTTTCTCTTTAGATTTATCTCCGCCAATAATCGCCCAC
TCTCAGATATCTACGCCCACTTGATTCCCTTTATAATTTTTGTTCACAAT
ATTGTATAAAATTATGACCTCTTTTGTACCATATTATTTATTTCAgagtt
ttttgttcttttatttttcactttttttaaaaatgggaAAATATGACAAT
TGACTGACTTTACGACAATATAATGACGACTGTTTTTTAACAGCAGCTCT
TTTCCCTTGAATGGACCAACTTCAGCACCAGGACTCCCTTATCTACTTAA
TAATATTCTGCTCGAAAAGGTCCTGGGTACTAAATTGGCTTAATGAAGGT
TAAGAGCATACATGACTGTGGactggttttgattttttttggtgctggat
tttttgtttgtttatatttttaGTTAAGAGCATACATGACTGTGGactgg
ttttgattttttttggtgctggattttttgtttgtttatatttttagttA
AGAAGCAAAAGATTCCCCATGAGTCTGTTTGAAGTTTTTCTACTCCTTGT
AATTGGTGGGAAATAACAACAAACTAAATGACTTTCTGGGATCTGTTGTG
AGAAGCTTTTGTACACGTTTTCGAATAACGTCAAAAGCaaattttagaac
atttttttgttgattataggaattatttttcattccatttttataattcc
tataattttttttgcaaacttttcagaaattgtaaattgttaaattcaag
ttttacggaaataattgataatacaaataaaagggaccaaataaaaaaat
tgagaac
Run BLAST on NCBI

transcript from alignment at sc0000156:364960..368568-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00012845 ID=TCONS_00012845|Name=TCONS_00012845|organism=Clytia hemisphaerica|type=transcript|length=3609bp|location=Sequence derived from alignment at sc0000156:364960..368568- (Clytia hemisphaerica)
TTTTGGTTTTTGTTATGATCCAGCACTCCTAAATACTCCTCCGTATGGGT
GTTTGTGCCAATGCTAGATCAGCATTTCATAAATATACCATGCGTCGTTC
CCTTTAAGCAAATAAAAACCACTCTTTTATCTTTAATCTCCTGATGATGA
CATGATTGAATTTCTTATTTAGAATACCTCCAACATATCATAACAATGGG
TCAATCTCAATACAATCTATTGTTAATGGAAATCAAAAGACATATCTGGG
CAGTGTCATTTATTTAACTCATTTCTGGTCAGATTAGCAACTAGCTAGGA
GGTACTCTGCAAACAGAAATCAATCAGTTACACAGGTTAGCTATATTTTA
TTTTTGATACACCAACATCTGTTTACTATTTCTGTTTACTGCTTTCTCAT
ATATCTCTGAAAACTTGCTTATTCATTAAGATGTTGATTATGCTCAACTC
CTGTGTTGTCTTCTCCTTGATCTTTTTAATAATTTTCTTTATTCTGATGC
CACCTGTTTGTATTGCACAAATGTTTGTTTCTGGTACATCATGATTTTGA
ATTTAGTATTGGTGGTTTTATAATGAACTTGCATACATCTTTTCTGTGCC
AGTTTTATTTTATTTTGAAAATTCAATCTCTTTCTAGAAAACATCTGTGC
ATTAGATCTTCTAAGTTTTTCTGGTATTTGGTGCAAACACAACCCTGAGC
TTTTCACTGATAGCTCCTTAAATTTCTCCTTGATTAAAAGTTTCGAAGAG
TCTGAACTTCATATAGGAACTAACCCTTTGTGAATTATCATAGCACAGGT
GCCACCCCCCCCCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGTACTAG
GGTTGATGAATGAGGGGTATGTGCAGACGGGACCTCCGAAAACTGACCCT
TAGAGAGACTGATTTTTGCTGAAAAAGTGACCCTTAGATAGACTTTTTGA
ATTTTTTTTTCGATTTTTTCGAAAAAAGTCATACCCTTAGAGAGACAATA
TTACAATTTTTTCTCTGGAAATCAAAAAGTTTCCTAAAAATCCTGAATTT
TCCGACCCTTAAAGAGAGTAATTTAAAACTTTCTGATTTTTCCGACCCTT
AGAGAGACTTTGAAAGGTGAAAAAACCGACCCTTACCCTTACACATACCC
ATCATCCATTTTTGTCTAAGTGCCCCCCTTCCCCCCGGGTTTTACCCTCT
TAGTACTTGCATGGGACTTTCAAATCTTTGATAAAATGAGATTTTTTTTA
CATTTCTTAGATTTCTTCCCTGACTTTCATGGAATAAAACTAGAGTTGTC
TCTTTCTCTCTCTCTCTAATTCGATCTTCATGGGACGGAAAGATTTCTTC
GAATAAGAGAAACATTTGAATATAGAGGGTGATTTAAAATGTTTTACTTC
GAATTACAGAAAGATTCGAATGATAGAGGTTCGAATTAGAGAGAGTTGAC
TAGGCTGTATCACAAACTCCTTATTCTCTTATCATAGCATTCATCACAAT
GGCAAAAATCAGTGAAGACGAACTCGACGACATTAAGGAGAGATACGAAC
TCTTCGATAAGAAAGGAGATGGAAAAATCGATGCAGCACAAATTATTGAT
GTTCTTCGTGCTTGTGGACAAAACCCACTCANGATCGATGCTGCACAAAT
TATTGATGTTCTTCGTGCTTGTGGACAAAACCCACTCAAACCCGATGTCG
ATAAGGTATAATTTCTTCATTTATCAAGTAGTATGCATTCATTGAGTATT
ATCCAATATATATTTCGTTTGTCTATAACGTTCTATTCAAGTTTCTCAAA
TCCTCTGTTTTATGATTTACATTTTACTAGTTGTAGTTGTCTAATAAGGA
CATCTTGAGGTTATTTTCATGTATACGTAAATGTTAATTTTTTCAATTTT
TTATATTCCAGATCATCAAAGAATCTGAATTAGACGGCAAACGTGTTGAA
TTAGAAGTTTTCTGTGGTATTTACGAACAAATCTCGAAAGCACCTGGACA
AGCTTGTTTTGAAGATATGGTTGAAGCTTTCAAAACATACGACAAAGAAT
CAAACGGTTCTATTTCATCGGCACAAATTCGTCAACTTCTGATCAACTTG
GGAGATACGTTGACTGAACAAGAAGCTGATATCATCCTAGCGCCACATGA
AGATGACCAGAGCAATATCAGTTATCAACAACTCATCAAATCTCTTGTTG
GAGAAAAGAAATAAATAGATTTTTCTCTTTAGATTTATCTCCGCCAATAA
TCGCCCACTCTCAGATATCTACGCCCACTTGATTCCCTTTATAATTTTTG
TTCACAATATTGTATAAAATTATGACCTCTTTTGTACCATATTATTTATT
TCAGAGTTTTTTGTTCTTTTATTTTTCACTTTTTTTAAAAATGGGAAAAT
ATGACAATTGACTGACTTTACGACAATATAATGACGACTGTTTTTTAACA
GCAGCTCTTTTCCCTTGAATGGACCAACTTCAGCACCAGGACTCCCTTAT
CTACTTAATAATATTCTGCTCGAAAAGGTCCTGGGTACTAAATTGGCTTA
ATGAAGGTTAAGAGCATACATGACTGTGGACTGGTTTTGATTTTTTTTGG
TGCTGGATTTTTTGTTTGTTTATATTTTTAGTTAAGAAGCAAAAGATTCC
CCATGAGTCTGTTTGAAGTTTTTCTACTCTTTGTAATTGGTGGGAAATAA
CAACAAACTAAATGACTTTCTGGGATCTGTTGTGAGAAGCTTTTGTACAC
GTTTTCGAATAACGTCAAAAGCAAATTTTAGAACATTTTTTTGTTGATTA
TAGGAATTATTTTTCATTCCATTTTTATAATTCCTATAATTTTTTTTGCA
AACTTTTCAGAAATTGTAAATTGTTAAATTCAAGTTTTACGGAAATAATT
GATAATACAAATAAAAGGGACCAAATAAAAAAATTGAGAACTTTTTGCAT
ACCATATTTATTTTCTAATTAAGTTTGACTTAAGTCTAAGAAGTNTTAAT
GACGACTGTTTTTTAACAGCAGCTCTTTTCCCTTGAATGGACCAACTTCA
GCACCAGGACTCCCTTATCTACTTAATAATATTCTGCTAGAAAAGGTCCT
GGGTACTAAATTGGCTTATTGAAGGTTAAGAGCATACATGACTGTGGACT
GGTTTTGATTTTTTTTGGTGCTGGATTTTTTGTTTGTTTATATTTTTAGT
TAAGAAGCAAAAGATTCCCCATGAGTCTGTTTGAAGTTTTTCTACTCCTT
GTAATTGGTGGGAAATAACAACAAACTAAATGACTTTCTGGGATCTGTTG
TGAGAAGCTTTTGTACACGTTTTCGAATAACGTCAAAAGCAAATTTTAGA
ACATTTTTTTGTTGATTATAGGAATTATTTTTCATTCCATTTTTATAATT
CCTATAATTTTTTTTGCAAACTTTTCAGAAATTGTAAATTGTTAAATTCA
AGTTTTACGGAAATAATTGATAATACAAATAAAAGGGACCAAATAAAAAA
ATTGAGAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007199XLOC_007199Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00012845-exon-sc0000156-1575043694:368234..368568TCONS_00012845-exon-sc0000156-1575043694:368234..368568Clytia hemisphaericaexon
TCONS_00012845-exon-sc0000156-1575043694:366764..366981TCONS_00012845-exon-sc0000156-1575043694:366764..366981Clytia hemisphaericaexon
TCONS_00012845-exon-sc0000156-1575043694:365839..366557TCONS_00012845-exon-sc0000156-1575043694:365839..366557Clytia hemisphaericaexon
TCONS_00012845-exon-sc0000156-1575043694:364960..365344TCONS_00012845-exon-sc0000156-1575043694:364960..365344Clytia hemisphaericaexon
TCONS_00012845-exon-sc0000156-1510915933:368234..368568TCONS_00012845-exon-sc0000156-1510915933:368234..368568Clytia hemisphaericaexon
TCONS_00012845-exon-sc0000156-1510915933:366764..366981TCONS_00012845-exon-sc0000156-1510915933:366764..366981Clytia hemisphaericaexon
TCONS_00012845-exon-sc0000156-1510915933:365839..366557TCONS_00012845-exon-sc0000156-1510915933:365839..366557Clytia hemisphaericaexon
TCONS_00012845-exon-sc0000156-1510915933:364960..365344TCONS_00012845-exon-sc0000156-1510915933:364960..365344Clytia hemisphaericaexon
TCONS_00012845-exon-sc0000156-1491911889:368234..368568TCONS_00012845-exon-sc0000156-1491911889:368234..368568Clytia hemisphaericaexon
TCONS_00012845-exon-sc0000156-1491911889:366764..366981TCONS_00012845-exon-sc0000156-1491911889:366764..366981Clytia hemisphaericaexon
TCONS_00012845-exon-sc0000156-1491911889:365839..366557TCONS_00012845-exon-sc0000156-1491911889:365839..366557Clytia hemisphaericaexon
TCONS_00012845-exon-sc0000156-1491911889:364960..365344TCONS_00012845-exon-sc0000156-1491911889:364960..365344Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000156supercontigsc0000156:364960..368568 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.317392	0.351063	0.762328	0.611053	0.876583	0.475028	0.408074	0.666003	0.744209	0.172796	0.156621	0.629856	2.75057	1.81455	0.167801	0.602695	2.37073	2.18573	0.726095	3.67219	2.14821	4.69808	1.47146	2.26617	1.10563	2.02823	1.05257	1.74016	0.278024	0.317076
Blast
[Close]
BLAST of TCONS_00012845 vs. Swiss-Prot (Human)
Match: MYL6B (Myosin light chain 6B OS=Homo sapiens GN=MYL6B PE=1 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 6.049e-32
Identity = 62/162 (38.27%), Postives = 98/162 (60.49%), Query Frame = 2 
Query:  356 ISEDELDDIKERYELFDKKGDGKIDAAQIIDVLRACGQNPLXIDAAQIIDVLRACGQNPLKPDVDKIIKESELDGKRVELEVFCGIYEQISKAPGQACFEDMVEAFKTYDKESNGSISSAQIRQLLINLGDTLTEQEADIILAPHEDDQSNISYQQLIKSLV 841
             ++D+L++ KE +ELFD+ GDGKI  +Q  DV+RA GQNP     A+++ VL     NP         K  EL  +RV+ E F  + + ++K  GQ  +ED +E F+ +DKE NG +  A++R +L  LG+ +TE+E + +LA HED    I+Y+  +K ++
Sbjct:   61 FNKDQLEEFKEAFELFDRVGDGKILYSQCGDVMRALGQNPTN---AEVLKVL----GNP---------KSDELKSRRVDFETFLPMLQAVAKNRGQGTYEDYLEGFRVFDKEGNGKVMGAELRHVLTTLGEKMTEEEVETVLAGHEDSNGCINYEAFLKHIL 206
The following BLAST results are available for this feature:
BLAST of TCONS_00012845 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MYL6B6.049e-3238.27Myosin light chain 6B OS=Homo sapiens GN=MYL6B PE=... [more]
back to top