TCONS_00012795 (transcript) - C. hemisphaerica

Overview
NameTCONS_00012795
Unique NameTCONS_00012795
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1058

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00012795 ID=TCONS_00012795|Name=TCONS_00012795|organism=Clytia hemisphaerica|type=transcript|length=1058bp
gttctcaatttttttatttggtcccttttatttgtattatcaattatttc
cgtaaaacttgaatttaacaatttacaatttctgaaaagtttgcaaaaaa
aattataggaattataaaaatggaatgaaaaataattcctataatcaaca
aaaaaatgttctaaaatttGCTTTTGACGTTATTCGAAAACGTGTACAAA
AGCTTCTCACAACAGATCCCAGAAAGTCATTTAGTTTGTTGTTATTTCCC
ACCAATTACAAGGAGTAGAAAAACTTCAAACAGACTCATGGGGAATCTTT
TGCTTCTTaactaaaaatataaacaaacaaaaaatccagcaccaaaaaaa
atcaaaaccagtCCACAGTCATGTATGCTCTTAACCTTCAATAAGCCAAT
TTAGTACCCAGGACCTTTTCTAGCAGAATATTATTAAGTAGATAAGGGAG
TCCTGGTGCTGAAGTTGATAAGGGAGTCCTGGTGCTGAAGTTGGTCCATT
CAAGGGAAAAGAGCTGCTGTTAAAAAACAGTCGTCATTATATTGTCGTAA
AGTCAGTCAATTGTCATATTTtcccatttttaaaaaaagtgaaaaataaa
agaacaaaaaactcTGAAATAAATAATATGGTACAAAAGAGGTCATAATT
TTATACAATATTGTGAACAAAAATTATAAAGGGAATCAAGTGGGCGTAGA
TATCTGAGAGTGGGCGATTATTGGCGGAGATAAATCTAAAGAGAAAAAtc
tatttatttcttttctccAACAAGAGATTTGATGAGTTGTTGATAACTGA
TATTGCTCTGGTCATCTTCATGTGGCGCTAGGATGATATCAGCTTCTTGT
TCAGTCAACGTATCTCCCAAGTTGATCAGAAGTTGACGAATTTGTGCCGA
TGAAATAGAACCGTTTGATTCTTTGTCGTATGTTTTGAAAGCTTCAACCA
TATCTTCAAAACAAGCTTGTCCAGGTGCTTTCGAGATTTGTTCGTAAATA
CCACAGAAAACTTCTAATTCAACACGTTTGCCGTCTAATTCAGATTCTTT
GATGATCT
Run BLAST on NCBI

transcript from alignment at sc0000156:364960..366559+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00012795 ID=TCONS_00012795|Name=TCONS_00012795|organism=Clytia hemisphaerica|type=transcript|length=1600bp|location=Sequence derived from alignment at sc0000156:364960..366559+ (Clytia hemisphaerica)
gttctcaatttttttatttggtcccttttatttgtattatcaattatttc
cgtaaaacttgaatttaacaatttacaatttctgaaaagtttgcaaaaaa
aattataggaattataaaaatggaatgaaaaataattcctataatcaaca
aaaaaatgttctaaaatttGCTTTTGACGTTATTCGAAAACGTGTACAAA
AGCTTCTCACAACAGATCCCAGAAAGTCATTTAGTTTGTTGTTATTTCCC
ACCAATTACAAGGAGTAGAAAAACTTCAAACAGACTCATGGGGAATCTTT
TGCTTCTTaactaaaaatataaacaaacaaaaaatccagcaccaaaaaaa
atcaaaaccagtCCACAGTCATGTATGCTCTTAACCTTCAATAAGCCAAT
TTAGTACCCAGGACCTTTTCTAGCAGAATATTATTAAGTAGATAAGGGAG
TCCTGGTGCTGAAGTTGGTCCATTCAAGGGAAAAGAGCTGCTGTTAAAAA
ACAGTCGTCATTAANACTTCTTAGACTTAAGTCAAACttaattagaaaat
aaatatgGTATGCAAAaagttctcaatttttttatttggtcccttttatt
tgtattatcaattatttccgtaaaacttgaatttaacaatttacaatttc
tgaaaagtttgcaaaaaaaattataggaattataaaaatggaatgaaaaa
taattcctataatcaacaaaaaaatgttctaaaatttGCTTTTGACGTTA
TTCGAAAACGTGTACAAAAGCTTCTCACAACAGATCCCAGAAAGTCATTT
AGTTTGTTGTTATTTCCCACCAATTACAAAGAGTAGAAAAACTTCAAACA
GACTCATGGGGAATCTTTTGCTTCTTaactaaaaatataaacaaacaaaa
aatccagcaccaaaaaaaatcaaaaccagtCCACAGTCATGTATGCTCTT
AACCTTCATTAAGCCAATTTAGTACCCAGGACCTTTTCGAGCAGAATATT
ATTAAGTAGATAAGGGAGTCCTGGTGCTGAAGTTGGTCCATTCAAGGGAA
AAGAGCTGCTGTTAAAAAACAGTCGTCATTATATTGTCGTAAAGTCAGTC
AATTGTCATATTTtcccatttttaaaaaaagtgaaaaataaaagaacaaa
aaactcTGAAATAAATAATATGGTACAAAAGAGGTCATAATTTTATACAA
TATTGTGAACAAAAATTATAAAGGGAATCAAGTGGGCGTAGATATCTGAG
AGTGGGCGATTATTGGCGGAGATAAATCTAAAGAGAAAAAtctatttatt
tcttttctccAACAAGAGATTTGATGAGTTGTTGATAACTGATATTGCTC
TGGTCATCTTCATGTGGCGCTAGGATGATATCAGCTTCTTGTTCAGTCAA
CGTATCTCCCAAGTTGATCAGAAGTTGACGAATTTGTGCCGATGAAATAG
AACCGTTTGATTCTTTGTCGTATGTTTTGAAAGCTTCAACCATATCTTCA
AAACAAGCTTGTCCAGGTGCTTTCGAGATTTGTTCGTAAATACCACAGAA
AACTTCTAATTCAACACGTTTGCCGTCTAATTCAGATTCTTTGATGATCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007181XLOC_007181Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00012795-exon-sc0000156-1491911889:364960..365426TCONS_00012795-exon-sc0000156-1491911889:364960..365426Clytia hemisphaericaexon
TCONS_00012795-exon-sc0000156-1510915933:364960..365426TCONS_00012795-exon-sc0000156-1510915933:364960..365426Clytia hemisphaericaexon
TCONS_00012795-exon-sc0000156-1575043694:364960..365426TCONS_00012795-exon-sc0000156-1575043694:364960..365426Clytia hemisphaericaexon
TCONS_00012795-exon-sc0000156-1491911889:365969..366559TCONS_00012795-exon-sc0000156-1491911889:365969..366559Clytia hemisphaericaexon
TCONS_00012795-exon-sc0000156-1510915933:365969..366559TCONS_00012795-exon-sc0000156-1510915933:365969..366559Clytia hemisphaericaexon
TCONS_00012795-exon-sc0000156-1575043694:365969..366559TCONS_00012795-exon-sc0000156-1575043694:365969..366559Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000156supercontigsc0000156:364960..366559 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0.21349	0	0.249881	0	0	0	133.301	126.576	0	0	44.6343	72.3369	163.248	127.012	249.587	232.487	112.164	163.385	66.6614	95.1866	33.9888	19.3923	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002048EF_hand_dom
IPR011992EF-hand-dom_pair
Vocabulary: Molecular Function
TermDefinition
GO:0005509calcium ion binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005509 calcium ion binding
Blast
[Close]
BLAST of TCONS_00012795 vs. Swiss-Prot (Human)
Match: MYL6B (Myosin light chain 6B OS=Homo sapiens GN=MYL6B PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 4.609e-19
Identity = 35/94 (37.23%), Postives = 59/94 (62.77%), Query Frame = -3 
Query:  769 KESELDGKRVELEVFCGIYEQISKAPGQACFEDMVEAFKTYDKESNGSISSAQIRQLLINLGDTLTEQEADIILAPHEDDQSNISYQQLIKSLV 1050
            K  EL  +RV+ E F  + + ++K  GQ  +ED +E F+ +DKE NG +  A++R +L  LG+ +TE+E + +LA HED    I+Y+  +K ++
Sbjct:  113 KSDELKSRRVDFETFLPMLQAVAKNRGQGTYEDYLEGFRVFDKEGNGKVMGAELRHVLTTLGEKMTEEEVETVLAGHEDSNGCINYEAFLKHIL 206
The following BLAST results are available for this feature:
BLAST of TCONS_00012795 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MYL6B4.609e-1937.23Myosin light chain 6B OS=Homo sapiens GN=MYL6B PE=... [more]
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