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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00012779 ID=TCONS_00012779|Name=TCONS_00012779|organism=Clytia hemisphaerica|type=transcript|length=1331bp
GATAAATTCTTGGTGAATTGTGAATTCAAAGAAAGATAGTGCAGAATACA
AAACAAAAGTCGGTACGAAAACCGCCACGTCATCCAACAAAGCCGACACA
TCGTCCAATAAACCGACAAACTTATTACAAAGTGAAGATGAAGATAAAGA
gacgaaacaaaaacaaaccgaCGGAAAATATCGATTCCTTTTCTCAGGAT
TAACAGTTCAGGAGAAGATTGAATATGGGGCGGTGGTTGAGCAGTTGGGC
GGTGAATTTCTTGATGTTCAATATTTTTCCACGCAGTGCTCACACGTTAT
CGTCAACGCGCCCACAAGGAGTGAGAAATATCTAGCAGCCGTTTCCAGTG
GAAAATGGATCTTGCATAAATCCTACTTGGAAGCTAGCCGGGAAGCTGGT
CGCTTTGTGGACGAGGAAGATCATGAGTGGGGTGCTGACCTAGAATTACA
ACAATTCGAATCGTCTGGGAAACGTTTACGAATGGAATTAATCGAAAAAC
GTCTTGAAGATCCgaaattcaacattttcaaaggaTGGAACGTGTTGATG
TGTATCGAAACATCCAAAGTGCCGGGCGTTAAACGAATTGTCGAAGCGGG
CGGAGGGTGTATATTGGCCACAAGACCACcctttgaaaataaagaaggtG
CAACACATCTTTTTCTGACGGaTCCACGACTTGCAGAGAAATATGAGTTG
AATTGCCAACAATTTCAAGACGATGGATTGTGGGTTCTTCGCCTCGAATA
TATCTCTGATTTCCTCACCATACACCCGAAACCCTCTGCGCTCAACTACG
TCATCGCCGAACTGAAAAAAGACGACGAATCTACTACCAAAAGAACGTCT
GTGGCGGCAGTTGCCGGTAAACGTAAAGCCACCCGTGTCGCTACACCACA
GAAAGATAAACGTTTGCGAAGAGAGACTTCAAATAGATAGTTTCTATCTA
ATaagttatgtttttttttttgctttaaagtTGATAAAGAAGACTCCCTC
TAAATCTTCTTACGGTACTCTTAGGTTAGGATCAAAATCTTCTTTCAACT
TTAGTTCAGTAATCAGCGACTTCTTCATAATAAGTCGTTGATGTATTACA
CATCCTGAAGGTAGcacttttgtgaaagttttgagCCTTACTGGGGGATG
ATTGAcaatttacatttaaaaatgctctaaaaatagaATTCTGAGGTTCC
AATTATTTGGCAATgtatattctcaattttttggcCAATGTTATTAAGAA
TATTCTCATAGAGAGAGaacattcttatgaaaaatcgtGTAATTCGACTT
TCATGTaaccaaaaatattcttcgaaCCAGA Run BLAST on NCBI transcript from alignment at sc0000156:75418..81503+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00012779 ID=TCONS_00012779|Name=TCONS_00012779|organism=Clytia hemisphaerica|type=transcript|length=6086bp|location=Sequence derived from alignment at sc0000156:75418..81503+ (Clytia hemisphaerica)
GATAAATTCTTGGTGAATTGTAAAGTTcttattagtttgttttttaaatt
ctctattaataatggagtcgttgatttcttatacattttgaaatttcttc
gctttgcgaaaacagaacgctcgttccgcaagcccttttatgttgatttc
aTTATATTccttattttgaaaaactatcACCGTTTGTTGTTCCTTGGTTG
GCTCTAGCTTGCTTTTTTTCCTCAGGTGAATTCAAAGAAAGATAGTGCAG
AATACAAAACAAAAGTCGGTACGAAAACCGCCACGTCATCCAACAAAGCC
GACACATCGTCCAATAAACCGACAAACTTATTACAAAGTGAAGATGAAGA
TAAAGAgacgaaacaaaaacaaaccgaCGGAAAATATCGATTCCTTTTCT
CAGGATTAACAGTTCAGGAGAAGATTGAATATGGGGCGGTGGTTGAGCAG
TTGGGCGGTGAATTTCTTGATGTTCAATATTTTTCCACGCAGTGCTCACA
CGTTATCGTCAACGCGCCCACAAGGTAAAAGAAAGAGTATTTTTATTCGA
GGTTTcgtttgaaaaagtaaaacagaAACGATGATggaaatgaaaatcta
aaataatcTTTACTATGCTTAATTGTTAATCCCCGCCCTCATAGTGATCA
AAATTGCTAGTTAGGCTAGTCTGGTAAAGGCTAGATTCAAGCTCTACCTT
cactgttttcttcttttaaacTCGGCTCATATCTTTGCAACAATAAATGA
AATAGAAaggaaaaaccatcaaaaaatggaaaagatGTCATTCCTTGAGA
GAACTACAAATTTATTTACGTTTAGGAGTGAGAAATATCTAGCAGCCGTT
TCCAGTGGAAAATGGATCTTGCATAAATCCTACTTGGAAGCTAGCCGGGA
AGCTGGTCGCTTTGTGGACGAGGAAGATCATGAGTGGGGTGCTGACCTAG
AATTACAACAATTCGAATCGTCTGGGAAACGTTTACGAATGGAATTAATC
GAAAAACGTCTTGAAGATCCgaaattcaacattttcaaaggaTGGAACGT
GTTGATGTGTATCGAAACATCCAAAGTGCCGGGCGTTAAACGAATTGTCG
AAGCGGGCGGAGGGTGTATATTGGCCACAAGACCACcctttgaaaataaa
gaaggtGCAACACATCTTTTTCTGACGGGTAAGCTTTAAACTTCAACACT
CTGGAATATCTTTTTGACGAGTACAAACCgctattctatcaaaattttta
gcctgttttgtctccgctgcagatgatattgagacagactctaatttttc
aatttttgttttttaacaaTGTGTATAGTTTGAAGTACAATACCAATGCC
CTGAAGTATCAGCTGTATCGTTTATGAATTTGTGTATAGAATTGCTAATT
TAAtggaaatctttcaaaaaatctctccaaaGACCAATTTTTTCGTCCAT
ATTTCAATTTCTGATGACATTTGCACTTAATTCAAGGGATAGCATTGCTG
TATGATATCAAAAACTCAATTCTTACACGACATTAACATTTTATGTACCA
GCGGATTTCAGCATTTTTGGGAAAGTAATTCCTCTTTTTTACCATCTTTC
AGTCTTTTTTCTTCAGTCATTTTTCTCCCATCGCAACCACGATCCAAGAT
CAATTAATTAATGACTTCCTGTAATTTTCATTCGCTGAGTCTAATGATTC
ATTCATGTTACTTCAATTAAGGTTTTCGtaatcaatgacgtcatcgatat
CATAAATTAGTGATATTTGACTTATGATGCTAAGACGTTTTCATATCATA
CCATGCTTGTCGATAAAAAGATCCCATTATGTTGATTGAAACCTTTGATC
TTTAGCACGTGTTgttattgggctattccattttagatccatacaggggg
gggcggacaaacatttccagggggtaatcagaggaagatttccagggggt
aatcagAGGaggatttccagggggtaatcagAAGAAGATTTCCAGATAAA
AAGCTATTCTGAAACTTCCAGGAAGTAAAATGCTGATTTGAGTCCACCCT
GAATTTCAGGTTTGaataagaatttttccaagggatTTGCAAACTTTGTC
TTTTCCCAAGGAGCATCtacattttgaagaattttagtTTGGTATGAAAA
AGTTCGTCCACCCCAGTACCCCTGTATGGAGATTAAATGGAACAGCTCAT
TGAGGGATGAGACATATATGATGCTGCGCAAGCATTGTCGATTTGTGCAT
CCTTCGCTCATTAGTCGTTTTCAATAACTTCGTTTATTTTTCAGatgaac
tttttgagtttaaagcccaaagaTGTTCACcgttgtttcactttttttgt
aattacttaaagaatttgatgttttagaggcccaaatgttcttaacttgt
tctaaatACTTTGGCCAtcaagccttatgctcttatatagttttttatct
ttgaaaaacATGTATGTCATTACTTTTAAAACTCGTTATCACGTATGAAT
TTATTTGTTTAGAtcatcttcagttttttttacAGACACTATGAACTTTG
TCTGTAtcagacccgatatctacggagATTTTGAAATCAATTCCGTACCC
AGCTAAGTTACACTTTTATACGCGAGGTACACTATGGtacatagcctgga
tatccaggctgtaaactatttcacagtctagtttttgatattttatgttc
tggtttacagcctggtctccctagagcgatttgcattctctttaagagaa
tgcagtccgcttgcttgcgctcacttcgctaaaaccgtaagggccaatct
acacggcgtggagcaaaaataataaattctaaAGCAAGTgaagtgaagat
agggctttctgttacatgaaaacatgaaaaagaagaaaacagagccaagt
tcattttccaagaaaacatggttggtcatgataatgcatgcaaacttttt
tatggactttggtgtaatctttggatgttttaaatagttttagatcttgt
gagactgctttttattaatttctgttttgctgccctgggttggctaggaa
acatgggttttcactttcattctttagggagaccaagctctataatttta
gaactttgtatgttgaggtaaattttgttttttctaaaattttgagcttg
gatatccaggctatctGGTACAGAGCACTGAGTTCGGCCCATAATAATGA
TGCAAAAACCGCGCCGAATctgaaaatagattttatttttgacatagtca
ttactctcgatgtatTGAGTTCCAGTctcatcaacctttgcgtttatctc
ttttgcacgttaatcgcatcatttaacaaaatatatataacaacttgcac
gtatctttaattgagccacattgaattgtgggattgcaactcgtacaaat
gtcaaaaaaagtgaaaagtaataattatgacgttcgTGTTGCGGGGCGCT
ATTAATTCTGTCACGATCTTGAATTATACATCACTCAAATTTTCAACGTG
ATAAGCTTCTTACTTATATACTTAACTTTTGTCATTGACAAATAAGCTTA
ACCAATGACCCTGGATGTTGATTAGAAATCCACAATTCGGTCTAACTGTT
TTCGATTAATCCCATATATAAACCTTTTATCGGTTTTTAATGACCCCTTA
TCtacaatttttctttcattctcTCTGTTCACCACTTGGCTTGTATCAGA
TTTCATTAACCGCCGATCTACCCTTTCctcttttaaccattttttataag
attgtTGATGTACTTTGATTGATTGTGAtgtaccttaagagaagaaattt
tggcgaatgagcccactcgccaattttggtgcaatttggcggaatttatt
ttggcaatttaataaaatttctaaatttggcgagaattaattttggcgaa
caacccatttttgttcaatattttagctgaaaaaagagataaaaagggtt
ttaggagaaatagagactaaACTGAAAGAaacttaaatttggcgagaatt
tattttgCCGAATGACCTATAAATTTAAACCATTTTAAGAATGCAATCAA
CTATTTGGAAGAATCTGTTGTTCTTACAAAACCTCTCTTAACCTCGAGTC
AAGTGATGTGACGTCAAATACAGTATAAAAAAGCTCTGATTGAACCGGGG
GTGAATTTGAAAGCGCATGTTTTTTATACTTTCCTTCTTTCAATCATATT
ATCTTAATATTTCTCTATCACAAACAGCCTCTATTCCAAACTGAAACAGT
TACTTTTCTCTTCTCGGATTTCAGATCtgattttgtttgtttacacgttt
tatttataaaaataaattacataagaacataagacttcgatggccaaaat
attaagaacaagctacgaacattttaaggcttcatggactctaaaacacg
caatttcttaggaaattgcacaaaaatactcacaaaatggtgaaattaag
aacattctaagaacattttaggcctaaaactcaagaacatccgaaggctt
caagagttttggatgttcttataaaaaaatgtgtagtttGTTTTGACTGC
GAAATCCACGAATTAGACACTCGATGACGTTATAAACACTTTATTCTTTG
TGTAACAGAAACTCCTAATCAGATTCAAAATGAACGGTTAAAGGTTGACT
CTGCATCCAAACTCGCTGTCATTATAATTGATGGGCAATAGGTCATGCAA
ATGGGCCTTCTTAGAATCGATGTTTTAACTGCCTAAAAAGCTGTCGAATG
CACATGATAAGATATCCATTTTGTTTAACCACATTCAGACATTTTTCGAT
CAAAAACAGATTTAACAAATAAATTTGTTCCATGTTGATAAAGTACAGAC
CGGATTGTATAGAGATTCGTCTCCgctttttgtattttcttaggCTTCTG
TCCATCCTCtaacgaaaaagtttcttacaGTACAGTATAGTATGTTATAT
CTAAAGAGGTCTGCGAATCAGATAGTTATTTCTTGAACGGTCCCTAGACG
TGGATTTCGACGGAACGTGCATGTTGTTTATTTTCGGAGAGGTTTCATGT
GATAATGGAGAAGCTAATGATGAATTTAATTAATAGAACGGGAAGTTTTA
gttgtaaattaaaaaaatgattgatTTCCTGATTGAATTGTACTAATGGC
TTTCGGTCAGCACTCTGACCTATTGCGTTAGAAATCAAGTCACGGCAAAT
TTTGGAGCTTTTTGAGCTGCTTTCATTATTGAAGCAACTTTGGTTAAGAG
ACTATGTTTGCCTTTAAACCCTAAAGTTTCATAGTTCTTACCGTCTTTGG
AATTCTAAAACTAAATGTGAAGTAAATGTGGATGAAACATAACGCTCATT
GTCTTTGTTATTTCCATCCTGCTTCACCCTTTACCTTTCAATTAAGCCTT
ccttttgattgaattttgtttttcagaTCCACGACTTGCAGAGAAATATG
AGTTGAATTGCCAACAATTTCAAGACGATGGATTGTGGGTTCTTCGCCTC
GAATATATCTCTGATTTCCTCACCATACACCCGAAACCCTCTGCGCTCAA
CTACGTCATCGCCGAACTGAAAAAAGACGACGAATCTACTACCAAAAGAA
CGTCTGTGGCGGCAGTTGCCGGTAAACGTAAAGCCACCCGTGTCGCTACA
CCACAGAAAGATAAACGTTTGCGAAGAGAGACTTCAAATAGATAGTTTCT
ATCTAATaagttatgtttttttttttgctttaaagtTGATAAAGAAGACT
CCCTCTAAATCTTCTTACGGTACTCTTAGGTTAGGATCAAAATCTTCTTT
CAACTTTAGTTCAGTAATCAGCGACTTCTTCATAATAAGTCGTTGATGTA
TTACACATCCTGAAGGTAGcacttttgtgaaagttttgagCCTTACTGGG
GGATGATTGAcaatttacatttaaaaatgctctaaaaatagaATTCTGAG
GTTCCAATTATTTGGCAATgtatattctcaattttttggcCAATGTTATT
AAGAATATTCTCATAGAGAGAGaacattcttatgaaaaatcgtGTAATTC
GACTTTCATGTaaccaaaaatattcttcgaaCCAGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00012779-exon-sc0000156-1491911889:75418..75436 | TCONS_00012779-exon-sc0000156-1491911889:75418..75436 | Clytia hemisphaerica | exon |
| TCONS_00012779-exon-sc0000156-1510915933:75418..75436 | TCONS_00012779-exon-sc0000156-1510915933:75418..75436 | Clytia hemisphaerica | exon |
| TCONS_00012779-exon-sc0000156-1575043694:75418..75436 | TCONS_00012779-exon-sc0000156-1575043694:75418..75436 | Clytia hemisphaerica | exon |
| TCONS_00012779-exon-sc0000156-1491911889:75643..75941 | TCONS_00012779-exon-sc0000156-1491911889:75643..75941 | Clytia hemisphaerica | exon |
| TCONS_00012779-exon-sc0000156-1510915933:75643..75941 | TCONS_00012779-exon-sc0000156-1510915933:75643..75941 | Clytia hemisphaerica | exon |
| TCONS_00012779-exon-sc0000156-1575043694:75643..75941 | TCONS_00012779-exon-sc0000156-1575043694:75643..75941 | Clytia hemisphaerica | exon |
| TCONS_00012779-exon-sc0000156-1491911889:76243..76595 | TCONS_00012779-exon-sc0000156-1491911889:76243..76595 | Clytia hemisphaerica | exon |
| TCONS_00012779-exon-sc0000156-1510915933:76243..76595 | TCONS_00012779-exon-sc0000156-1510915933:76243..76595 | Clytia hemisphaerica | exon |
| TCONS_00012779-exon-sc0000156-1575043694:76243..76595 | TCONS_00012779-exon-sc0000156-1575043694:76243..76595 | Clytia hemisphaerica | exon |
| TCONS_00012779-exon-sc0000156-1491911889:80844..81503 | TCONS_00012779-exon-sc0000156-1491911889:80844..81503 | Clytia hemisphaerica | exon |
| TCONS_00012779-exon-sc0000156-1510915933:80844..81503 | TCONS_00012779-exon-sc0000156-1510915933:80844..81503 | Clytia hemisphaerica | exon |
| TCONS_00012779-exon-sc0000156-1575043694:80844..81503 | TCONS_00012779-exon-sc0000156-1575043694:80844..81503 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000156 | supercontig | sc0000156:75418..81503 + |
Blast
BLAST of TCONS_00012779 vs. Swiss-Prot (Human)
Match: TOPB1 (DNA topoisomerase 2-binding protein 1 OS=Homo sapiens GN=TOPBP1 PE=1 SV=3) HSP 1 Score: 149.443 bits (376), Expect = 4.749e-38 Identity = 79/225 (35.11%), Postives = 130/225 (57.78%), Query Frame = 2
Query: 176 KYRFLFSGLTVQEKIEYGAVVEQLGGEFLDVQYFSTQCSHVIVNAPTRSEKYLAAVSSGKWILHKSYLEASREAGRFVDEEDHEWGA----------DLELQQFESSGKRLRMELIEKRLEDPKFNIFKGWNVLMCIETSKVPGVKRIVEAGGGCILA--TRPPFENKEGATHLFLTDPRL-AEKYELNCQQFQDDGLWVLRLEYISDFLTIHPKPSALNYVIAE 811
+Y F S L QE+I+Y ++E+LGG ++ Q F C+H++V P R+EKYLA+V++GKW+LH+SYLEA R AG FV EED+EWG+ +++ ++ + R R ++ +++ F GW V++ ++ S+ G KR++++GG +L + P F+ ATHLF +L + +N + ++ LR EYI+D+L P NY + E
Sbjct: 1267 QYIFQLSSLNPQERIDYCHLIEKLGGLVIEKQCFDPTCTHIVVGHPLRNEKYLASVAAGKWVLHRSYLEACRTAGHFVQEEDYEWGSSSILDVLTGINVQQRRLALAAMRWRKKIQQRQESGIVEGAFSGWKVILHVDQSREAGFKRLLQSGGAKVLPGHSVPLFKE---ATHLFSDLNKLKPDDSGVNIAEAAAQNVYCLRTEYIADYLMQESPPHVENYCLPE 1488
The following BLAST results are available for this feature:
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