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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00012777 ID=TCONS_00012777|Name=TCONS_00012777|organism=Clytia hemisphaerica|type=transcript|length=5350bpRun BLAST on NCBI protein sequence of TCONS_00012777-protein >TCONS_00012777-protein ID=TCONS_00012777-protein|Name=TCONS_00012777-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1652bp YSSSNNQINMGPTLKFLRFSSGPNAERDLGIIGKAIEKSTSSEIDVEIIKRun BLAST on NCBI transcript from alignment at sc0000156:55402..81503+ Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00012777 ID=TCONS_00012777|Name=TCONS_00012777|organism=Clytia hemisphaerica|type=transcript|length=26102bp|location=Sequence derived from alignment at sc0000156:55402..81503+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000156:55402..81503+ >TCONS_00012777 ID=TCONS_00012777|Name=TCONS_00012777|organism=Clytia hemisphaerica|type=CDS|length=64467bp|location=Sequence derived from alignment at sc0000156:55402..81503+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00012777 vs. Swiss-Prot (Human)
Match: TOPB1 (DNA topoisomerase 2-binding protein 1 OS=Homo sapiens GN=TOPBP1 PE=1 SV=3) HSP 1 Score: 348.591 bits (893), Expect = 9.374e-98 Identity = 247/779 (31.71%), Postives = 380/779 (48.78%), Query Frame = 1
Query: 199 QAIYVCFPFEGKVFEKLKESGFRIIGPQCVVSCLMLEKAVPKLLYPVCNIAMEGVMACCSSMKKSDRKELYTLVEYMGGEVTADFTSAVTHLIANEVGSKKYIVAANQHIPIVSPSWIKHCWKISNFEHIVANSEEILKKHILPVFKGCTICVSGLDASQREVIKALSSEHGAVYSGELNMKTCTHLLVKSATGTKYTYAKQWKLHCVLPDWFFDCIKQGHWLPEEPYKVEPEPDSTMMTRSGNLTTRNEIEDTLPNRSSLTNKSTMLYXXXXXXXXXXXXXXXXXXXXXXXXXMRSTKXXXXXXXXXXXYFKIVFKFIKT-DSLNVHDLTIQDCGNYYLDGCEIFVAGEQGPVADVCRKIINNGGGMRSFELKESVTHVVVWENVSELVKKFLLDTDGSFPHVVSPTWLLDSFKSGEIMDEKGYSVMTVIEKGGDVTQGPDEVFAXXXXXXXXXXXXXXXXXXXXXXXXXXFEEDVTDDLKLADQYMSRNHHESTAINQPGHLANQFRLSVSNLTVTDNDQTATLIDNDRTASMEDETMTPFLRDMNFCVKYF------NEEEA-VNSMIEMSGGSITN--SVEDCDHIIVPLVYHKKREVHPKELTICWLETCYDYEEIQNAKECFLYRPHFVPKNLTRLLEGCVVTVSQYSIMKKAHLFHFAEALGAVTQDFFVRKNSVRSGVELKASTHLILSKPEGSKYDASVKWKMPCVSKEWLVESLKAGRMLPEADFSLK-----------ECNAGANLSR--IENLPQQVTTDHKTVQNP 2466
+++Y+C PF G VF+ LK+ G RI+GPQ V+ C+ ++ VP+ +PV N+ M V C+S++K R+E++ V+ MGG V D +VTHLIA EVGSKKY+VAAN PI+ PSWIK W+ S + I ++ ++ P+F GC ICV+GL R+ ++ L+ +HG Y G+L M CTHL+V+ G KY AK+W +HCV WFFD I++G E YK EP P++ T+PN S+ T++ + + S+ S + + + S K T ++L D++ LDGC I++ G G D R++IN+GGG+R +L E VTHV+V + EL K + PHVV WLL+ F G ++ E+ Y V+ P+ A S S + + E+ D L QY + ST + A F S + D+ + +N + S ++ + F K F NE E+ + ++I+ + G I + S D+ +VPL+ + + +T WL TC DY+ + + K L+ P V +T L E CV++ SQ + +K L A LGA Q++FVRK++ + G + ASTHLIL + GSKY+A+ KW +P V+ WL+E+ + G+ E+ F ++ E G NL+ E+ ++ T KTV P
Sbjct: 55 RSLYICDPFSGVVFDHLKKLGCRIVGPQVVIFCMHHQRCVPRAEHPVYNMVMSDVTISCTSLEKEKREEVHKYVQMMGGRVYRDLNVSVTHLIAGEVGSKKYLVAANLKKPILLPSWIKTLWEKSQEKKITRYTDINMEDFKCPIFLGCIICVTGLCGLDRKEVQQLTVKHGGQYMGQLKMNECTHLIVQEPKGQKYECAKRWNVHCVTTQWFFDSIEKGFCQDESIYKTEPRPEA----------------KTMPNSSTPTSQINTIDSRTLSDVSNISNINASCVSESICNSLNS-------------------KLEPTLENLENLDVSAFQAPEDLLDGCRIYLCGFSGRKLDKLRRLINSGGGVRFNQLNEDVTHVIVGDYDDEL--KQFWNKSAHRPHVVGAKWLLECFSKGYMLSEEPYIHANYQPVEIPVSHKPESKAALLKKKNSSFSKKDFAPS----------EKHEQADEDLLSQY---ENGSSTVVEAKTSEARPFNDSTHAEPLNDSTHISLQEENQSSVSHCVPDVSTITEEGLFSQKSFLVLGFSNENESNIANIIKENAGKIMSLLSRTVADYAVVPLLGCEVEATVGEVVTNTWLVTCIDYQTLFDPKSNPLFTPVPVMTGMTPL-EDCVISFSQCAGAEKESLTFLANLLGASVQEYFVRKSNAKKG--MFASTHLILKERGGSKYEAAKKWNLPAVTIAWLLETARTGKRADESHFLIENSTKEERSLETEITNGINLNSDTAEHPGTRLQTHRKTVVTP 780 HSP 2 Score: 267.314 bits (682), Expect = 5.205e-72 Identity = 213/744 (28.63%), Postives = 361/744 (48.52%), Query Frame = 1
Query: 2722 SFNTMIAQHSKSGVGEAPTCPAKLIPQNKENNNGFEIPADFKSPKFALNKSRFSFDFGEALDGMQSPAVNSQDLXXXXXXXXXXXLPFDVQFTEALQRAVDRE----VPEEQRKAIDESFTKKLHSEGILQDVVCVASRKLFSQQAQLYNMVRELGGDTKALYDSTCTHFIHQGRANDSSKDYVQAKDDGKYLVSPHWLKACYENGERVNENEYPITYNPRMSLDVSRTVE-KVLKSPVAAQKTSPRSDTPKTGKPETLQLVKSPNNNKSLIVNTDDQTHSKANDTPKEKDNLAQNI-LQQNMQKKLEELMEASK--QPRVRRSRRKTATDNRSIDATPKSEAASLSFNKRLRXXXXXXXXXXXXXXXXIGHNTNQAHLDIASEQSQAHTITYDDPTERAARERILAQLKDAS-PSQ------DIES-----FDHPINFHKFKQTPST------TTEAKQK--TDEAVNSKKDSAEYKTKVGTKTATSSNKADTSSNKPTNLLQSEDEDKETKQKQTDGKYRFLFSGLTVQEKIEYGAVVEQLGGEFLDVQYFSTQCSHVIVNAPTRSEKYLAAVSSGKWILHKSYLEASREAGRFVDEEDHEWGA----------DLELQQFESSGKRLRMELIEKRLEDPKFNIFKGWNVLMCIETSKVPGVKRIVEAGGGCILA--TRPPFENKEGATHLFLTDPRL-AEKYELNCQQFQDDGLWVLRLEYISDFLTIHPKPSALNYVIAE 4830
+F +++QH++ + PA P KE + + P+ F S K L K SFD +AL +++P SQ K + S P + LQ A+ V + E+ ++K + L VV S+KL +Q++L + LG D + +D T THFI+QGR ND++++Y K+ G ++VS HWL C + + + E+ YP TYNP+MSLD+S + ++ S + + +S + D P L+ N+ ++ N + S + K L Q + +++N QK+L+E+M A+ +P+ +R+ + N S +TP S ++ S R+ + Q D+ +E SQ I +DDPT R R R+ + L+ S P+Q DI++ F P++ + + TEA + ++E KDS T A + + ++ E+ +E K++ Y F S L QE+I+Y ++E+LGG ++ Q F C+H++V P R+EKYLA+V++GKW+LH+SYLEA R AG FV EED+EWG+ +++ ++ + R R ++ +++ F GW V++ ++ S+ G KR++++GG +L + P F+ ATHLF +L + +N + ++ LR EYI+D+L P NY + E
Sbjct: 790 AFRAVVSQHAR----QVAASPAVGQPLQKEPSLHLDTPSKFLS-KDKLFKP--SFDVKDALAALETPGRPSQQ-------KRKPSTPLSEVIVKNLQLALANSSRNAVALSASPQLKEAQSEKEEAPKPLHKVVVCVSKKLSKKQSELNGIAASLGADYRWSFDETVTHFIYQGRPNDTNREYKSVKERGVHIVSEHWLLDCAQECKHLPESLYPHTYNPKMSLDISAVQDGRLCNSRLLSAVSSTKDDEPDP-------LILEENDVDNMATNNKESAPSNGSGKNDSKGVLTQTLEMRENFQKQLQEIMSATSIVKPQGQRTSLSRSGCN-SASSTPDSTRSARSGRSRVLEAL---------------RQSRQTVPDVNTEPSQNEQIIWDDPTAREERARLASNLQWPSCPTQYSELQVDIQNLEDSPFQKPLHDSEIAKQAVCDPGNIRVTEAPKHPISEELETPIKDSHLIPTPQAPSIAFPLANPPVAPHPREKIITIEETHEELKKQ-----YIFQLSSLNPQERIDYCHLIEKLGGLVIEKQCFDPTCTHIVVGHPLRNEKYLASVAAGKWVLHRSYLEACRTAGHFVQEEDYEWGSSSILDVLTGINVQQRRLALAAMRWRKKIQQRQESGIVEGAFSGWKVILHVDQSREAGFKRLLQSGGAKVLPGHSVPLFKE---ATHLFSDLNKLKPDDSGVNIAEAAAQNVYCLRTEYIADYLMQESPPHVENYCLPE 1488 The following BLAST results are available for this feature:
BLAST of TCONS_00012777 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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