TCONS_00012753 (transcript) - C. hemisphaerica

Overview
NameTCONS_00012753
Unique NameTCONS_00012753
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length589

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00012753 ID=TCONS_00012753|Name=TCONS_00012753|organism=Clytia hemisphaerica|type=transcript|length=589bp
CGCCCgatctttaaattctaaaaaacgttaaaatacccaaaagtaCCAAT
ATTTCGGCACCGATTGTAGATGAtattattgatttttcttttttgtacaA
AGGTTTTTCTAATTGGCTTAGACAAGTTACttcttttttcaatatattaT
GTTGTAATATTTTcagtgtatttttttaaaagtgtaTTCTTTTAATATtg
tcatttcaaattttgttaaaatcatTTCGATACAAATAACGAACACAAGA
ATGGATAGATGTGCATGGTGAAGCCAGTGAATCAGACATAAAGGAATGTG
TCACATACTAACGAATATACGCTAACACCTTAACATCAACCTGGACAACG
CTGGACGAAGCAGAAATCAGTCATTTCAATCTCTTCGTAGGATAATTGCA
TTGGCAGGAAGAAAGGGTTGACAAATCGTCCATGAAAGATGTCAAGATTG
AACCACGTTTAGCAAATCCTGATTTGATGGAATGTCACCGTATAAAAACA
AGTtctgataatttttaaaaagagcaCTTTTTTATCTTAAATACTATTTC
CTTCGACTATCGTCTTCTCTTAAAACTAgtaaccccggg
Run BLAST on NCBI

transcript from alignment at sc0000147:512817..515248-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00012753 ID=TCONS_00012753|Name=TCONS_00012753|organism=Clytia hemisphaerica|type=transcript|length=2432bp|location=Sequence derived from alignment at sc0000147:512817..515248- (Clytia hemisphaerica)
CGCCCGATCTTTAAATTCTAAAAAACGTTAAAATACCCAAAAGTACCAAT
ATTTCGGCACCGATTGTAGATGATATTATTGATTTTTCTTTTTTGTACAA
AGGTTTTTCTAATTGGCTTAGACAAGTTACTTCTTTTTTCAATATATTAT
GTTGTAATATTTTCAGTGTATTTTTTTAAAAGTGTATTCTTTTAATATTG
TCATTTCAAATTTTGTTAAAATCATTTCGATACAAATAACGAACACAAGA
ATGGATAGATGTGCATGGTGAAGCCAGTGAATCAGACATAAAGGAATGTG
TCACATACTAACGAATATACGCTAACACCTTAACATCAACCTGGACAACG
CTGGACGAAGCAGAAATCAGTCATTTCAATCTCTTCGTAGGATAATTGCA
TTGGCAGGAAGAAAGGTATAACTAAGTTTTTAAACACCAAATTTGATTCT
ATGACTTGATGTTTTAAACAGAAAACACGTCCGTTTCTGCCACTACACGC
TTTTTTTATAAGAATGGTGTAAATCCATTTCATCATGAATATTCTTAACT
TTTTTTGGGAAAATCATCCTGAAATATTCTTACAGCATTCTTAGGTTAGG
ATCCTAATTCAGACTAGATTTAACATTTAGTACATGCGTCTCAAGGAGTG
AGCCTTACTTGGGGGTAATTGGTAATTTATAATTAAAAATGCTCTAAAAA
TGGCATTCTTAGCTTAAGTAGCCAAACTCCATGATGGTGATATTCTTAGC
ATTATTCTTAAATTTTTGGCCATTTTCATCATGGACATTCTTATAAAGTG
TCTTCTTATAAAAAAAGCGTGTACTTTTTTCATTTGACCATACAAATATA
AAAACGAATTTTACCTTTTTTTCATCGCAATGAATAAAAGATAAAATTGA
TGTAGAAGAAAATGAAGACTTTCGCGATGAAAAGACGAGAAGAACTCCAA
CTTTAACGGCCTTATTTCTCGGCTTTCTGTTTCAAATCAAAATCTCCGAA
AGCAGTCATAACTTTTTTGTGTCGATTAATGAAATAATTGTTCCAAAGAA
ATCTGATTACCTTATCGGCCCTTCTTACGCCGGCCCTAATTTAACACCGG
CCCTTATTACGCCACAGCCTGATTTTGGGCTTACGCCAATTAAGGCCGTA
AATAACGCCAAAATTTGCTAGAATGGCTATTTATGCTTCAATCATAGTAT
AAGAAAGCCGCGGCTGGAATGATAACATCTGAATTTCTACTGTTCTATCT
CTGTCGTATTTGATGACTATTTGTTGATCAAGAAATAAGTAGTGTAGCAT
CTTTAATGGTAAATTTTATTGGTTTGTCGTTAATATTTTTCAATATTTCT
CACTGCGTTTTAGACATTCATGATATGCCCTTGATAATACACTTGCACTA
TGAAATCATTGTGCAGGAAAGATCAACAATAAGAAATTTAAACAAGCACA
AAATGACTGTACTGAAAGAACTCAAAAATTAATAAAGTGCCTCGAAATGC
CTTCACAATATTTCAGTGAAATCTTTTTAGAAATCAATGAAATAGAACAT
CAAGATAATTCTGTGAAAATTTCAAGTCAGCACCTTCAAAATTTATCATT
CAAACTGACAGGAAAGTTGTCATTTTGAATATATTTCTTATAATTTTAAT
TTTGGCGAAAAACTATCGTTTCCACAAATTACCCCTAAAATATGTCTAAA
ATCAGTTCAAGTTTTCTATTTGGTACAGATTCAAAAATATCTAGCAATAA
AAAAACTTTTTTTGAAGGAAAATAAGAAAAAAATTCAAAAACTATCTACC
AATAATAAACTGACAATCTTGATGCTCTTATAAAGCTCGGAGACAGAGAT
AGAACAGCAATTAACTGAAAAGACAGTACATATTCCAGCCGCGGCTTTCT
TATACTATGCTTCAATTCACATTAAAACATTTTTCAGTAGTAAACTGTTG
AAAATTCCATTGAAAATCACTGATTTTTGCGAAGTTTTAGACATGAAGTA
AAACAATGGATAATTTTTTATCTTCGAATAATACCCAAAATCCTTTAAAT
AGATAAAATGGTCAAAAGTTAACGCCACTTTTAAGTAAAATTTGCAAAAT
TTTTGCCCTTTTTACACCGGCCCTTTTAACGCCGGCCCTTATTACACCAA
GAGCCTAAAAATAACGCCAATAAGGGCCGGCGTAAAAAGGTCCGATAAGG
TACTTGTTGTACGGCGGTTAATCACCAACTGAGAATCCATTTTCCAATTT
GCTTTTAGGGTTGACAAATCGTCCATGAAAGATGTCAAGATTGAACCACG
TTTAGCAAATCCTGATTTGATGGAATGTCACCGTATAAAAACAAGTTCTG
ATAATTTTTAAAAAGAGCACTTTTTTATCTTAAATACTATTTCCTTCGAC
TATCGTCTTCTCTTAAAACTAGTAACCCCGGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007150XLOC_007150Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00012753-exon-sc0000147-1575043694:514834..515248TCONS_00012753-exon-sc0000147-1575043694:514834..515248Clytia hemisphaericaexon
TCONS_00012753-exon-sc0000147-1575043694:512817..512990TCONS_00012753-exon-sc0000147-1575043694:512817..512990Clytia hemisphaericaexon
TCONS_00012753-exon-sc0000147-1510915933:514834..515248TCONS_00012753-exon-sc0000147-1510915933:514834..515248Clytia hemisphaericaexon
TCONS_00012753-exon-sc0000147-1510915933:512817..512990TCONS_00012753-exon-sc0000147-1510915933:512817..512990Clytia hemisphaericaexon
TCONS_00012753-exon-sc0000147-1491911889:514834..515248TCONS_00012753-exon-sc0000147-1491911889:514834..515248Clytia hemisphaericaexon
TCONS_00012753-exon-sc0000147-1491911889:512817..512990TCONS_00012753-exon-sc0000147-1491911889:512817..512990Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000147supercontigsc0000147:512817..515248 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.24641	0.455216	0.10571	0	0	0.0994914	0	0	0	0.229743	1.02963	0.248716	1.55563	1.06864	13.4646	13.1814	4.4527	4.73812	9.27027	8.28056	1.09304	0.812549	7.73118	7.77092	1.31411	2.38114	42.3282	36.5638	23.0248	15.0615
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00012753 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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