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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00012745 ID=TCONS_00012745|Name=TCONS_00012745|organism=Clytia hemisphaerica|type=transcript|length=908bp
agaactgacaatcaaattcaaagtaCAATCAGGAAGACTTTCATCTCGTG
TACAGTTCTAACTGTTGCTCATCGTTTGAATACCATCATGGATTGTGATC
GAATTATGGTTTTAGATGCTGGGAACATTGTTGAATTCGATTTACCATAC
AAACTCCTACAAATACCAAACGGACATTTCAATCAACTAGTACAACAAAA
TAGCGACGAAGAAGTTTCACGATTAACGGAGGTTGCCAAAACATCTGCTA
TAGAGAGAAATATAGATCTTGATCAAATCGACAAAGAAATGGCCAGTCAA
ATACCAGTATTGAACATTCCAACCATCATGTATGATGATGCAGATGATAT
CGGAATGATCAATACAACCTTCCAAGACAATGAATAGAAATTATGAACCT
AATTAAACAGGAACACTTTCACTTGTTAGGATTGTTGAGGCCAACTATCT
TATTTTTGTGGATTACTTAGTTGACTTTGTGCTATAAAGTTCCTTCGATA
CAAATCCCTTGAAGACTACAACTGCAACAGCCGTTGCCAGAAATGCAAAC
catttaacaatttttttgtgGTTAGGATGGGAACGGAAATTCTTTTTAGT
TTGATCTttgtttgtaaatatttttttattcaagaagaaattttgtttgt
tttaaggGTAGATTTTGTTAGAAAACACCGGATTCGAGCAAAACACGAGA
AAACTCCAGCCCAGGTCAAAATCTAGTCTAAAAAAAACCCGCAGGTATTT
TAGTCTATGACGAGGAGAACGATCTGTTAGTGGATGCCATCAGCCTCGTC
GAAATCTTGAAGATTGGGAAGTGGTTACTTTGCAttggtttgagattttt
ggcTAAGTTTGTTCAGCTGAATAAAGATTCGGTCGATGAATTCCACGTAT
ATATAGAG Run BLAST on NCBI protein sequence of TCONS_00012745-protein >TCONS_00012745-protein ID=TCONS_00012745-protein|Name=TCONS_00012745-protein|organism=Clytia hemisphaerica|type=polypeptide|length=128bp
RTDNQIQSTIRKTFISCTVLTVAHRLNTIMDCDRIMVLDAGNIVEFDLPY
KLLQIPNGHFNQLVQQNSDEEVSRLTEVAKTSAIERNIDLDQIDKEMASQ
IPVLNIPTIMYDDADDIGMINTTFQDNE Run BLAST on NCBI transcript from alignment at sc0000147:369768..371019- Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00012745 ID=TCONS_00012745|Name=TCONS_00012745|organism=Clytia hemisphaerica|type=transcript|length=1252bp|location=Sequence derived from alignment at sc0000147:369768..371019- (Clytia hemisphaerica)
AGAACTGACAATCAAATTCAAAGTACAATCAGGAAGACTTTCATCTCGTG
TACAGTTCTAACTGTTGCTCATCGTTTGAATACCATCATGGATTGTGATC
GAATTATGGTAAGTATATTATTTGGAACATTTCTGGTAAACTTTGTCCTG
GTAAGGGAACATGGTCTTTGTAGTTAATTGGAGTAAACTTGAGAAAGGCA
AACCTTTAGAGGCGTTTTTTGGCACGGCAATCATTGAAATATTTAGGGAC
AAGCTGGAGTTTTTACAAGCTCTCGTTTGATTTGGTTAGTCGTTAACCTT
TAATAAAACAATTTTGTTACTTTTTCTAAAGAACGCGACGTCTCTACTAC
TTTAAATGACCAATTAGTAAAGTAGCTTGTAAAAACTCCAGCTCATCCCA
ATATTTATCGTTGTAATTGTAATACGAAATAACTACATTTTATTTTATAT
AGGTTTTAGATGCTGGGAACATTGTTGAATTCGATTTACCATACAAACTC
CTACAAATACCAAACGGACATTTCAATCAACTAGTACAACAAAATAGCGA
CGAAGAAGTTTCACGATTAACGGAGGTTGCCAAAACATCTGCTATAGAGA
GAAATATAGATCTTGATCAAATCGACAAAGAAATGGCCAGTCAAATACCA
GTATTGAACATTCCAACCATCATGTATGATGATGCAGATGATATCGGAAT
GATCAATACAACCTTCCAAGACAATGAATAGAAATTATGAACCTAATTAA
ACAGGAACACTTTCACTTGTTAGGATTGTTGAGGCCAACTATCTTATTTT
TGTGGATTACTTAGTTGACTTTGTGCTATAAAGTTCCTTCGATACAAATC
CCTTGAAGACTACAACTGCAACAGCCGTTGCCAGAAATGCAAACCATTTA
ACAATTTTTTTGTGGTTAGGATGGGAACGGAAATTCTTTTTAGTTTGATC
TTTGTTTGTAAATATTTTTTTATTCAAGAAGAAATTTTGTTTGTTTTAAG
GGTAGATTTTGTTAGAAAACACCGGATTCGAGCAAAACACGAGAAAACTC
CAGCCCAGGTCAAAATCTAGTCTAAAAAAAACCCGCAGGTATTTTAGTCT
ATGACGAGGAGAACGATCTGTTAGTGGATGCCATCAGCCTCGTCGAAATC
TTGAAGATTGGGAAGTGGTTACTTTGCATTGGTTTGAGATTTTTGGCTAA
GTTTGTTCAGCTGAATAAAGATTCGGTCGATGAATTCCACGTATATATAG
AG Coding sequence (CDS) from alignment at sc0000147:369768..371019- >TCONS_00012745 ID=TCONS_00012745|Name=TCONS_00012745|organism=Clytia hemisphaerica|type=CDS|length=774bp|location=Sequence derived from alignment at sc0000147:369768..371019- (Clytia hemisphaerica)
GTTTTAGATGCTGGGAACATTGTTGAATTCGATTTACCATACAAACTCCT
ACAAATACCAAACGGACATTTCAATCAACTAGTACAACAAAATAGCGACG
AAGAAGTTTCACGATTAACGGAGGTTGCCAAAACATCTGCTATAGAGAGA
AATATAGATCTTGATCAAATCGACAAAGAAATGGCCAGTCAAATACCAGT
ATTGAACATTCCAACCATCATGTATGATGATGCAGATGATATCGGAATGA
TCAATACAACCTTCCAAGACAATGAATAGAGAACTGACAATCAAATTCAA
AGTACAATCAGGAAGACTTTCATCTCGTGTACAGTTCTAACTGTTGCTCA
TCGTTTGAATACCATCATGGATTGTGATCGAATTATGGTTTTAGATGCTG
GGAACATTGTTGAATTCGATTTACCATACAAACTCCTACAAATACCAAAC
GGACATTTCAATCAACTAGTACAACAAAATAGCGACGAAGAAGTTTCACG
ATTAACGGAGGTTGCCAAAACATCTGCTATAGAGAGAAATATAGATCTTG
ATCAAATCGACAAAGAAATGGCCAGTCAAATACCAGTATTGAACATTCCA
ACCATCATGTATGATGATGCAGATGATATCGGAATGATCAATACAACCTT
CCAAGACAATGAATAGAGAACTGACAATCAAATTCAAAGTACAATCAGGA
AGACTTTCATCTCGTGTACAGTTCTAACTGTTGCTCATCGTTTGAATACC
ATCATGGATTGTGATCGAATTATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00012745-exon-sc0000147-1575043694:370912..371019 | TCONS_00012745-exon-sc0000147-1575043694:370912..371019 | Clytia hemisphaerica | exon |
| TCONS_00012745-exon-sc0000147-1575043694:369768..370567 | TCONS_00012745-exon-sc0000147-1575043694:369768..370567 | Clytia hemisphaerica | exon |
| TCONS_00012745-exon-sc0000147-1510915933:370912..371019 | TCONS_00012745-exon-sc0000147-1510915933:370912..371019 | Clytia hemisphaerica | exon |
| TCONS_00012745-exon-sc0000147-1510915933:369768..370567 | TCONS_00012745-exon-sc0000147-1510915933:369768..370567 | Clytia hemisphaerica | exon |
| TCONS_00012745-exon-sc0000147-1491911889:370912..371019 | TCONS_00012745-exon-sc0000147-1491911889:370912..371019 | Clytia hemisphaerica | exon |
| TCONS_00012745-exon-sc0000147-1491911889:369768..370567 | TCONS_00012745-exon-sc0000147-1491911889:369768..370567 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000147 | supercontig | sc0000147:369768..371019 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR027417 | P-loop_NTPase |
Blast
BLAST of TCONS_00012745 vs. Swiss-Prot (Human)
Match: MRP4 (Multidrug resistance-associated protein 4 OS=Homo sapiens GN=ABCC4 PE=1 SV=3) HSP 1 Score: 82.8037 bits (203), Expect = 1.891e-17 Identity = 39/66 (59.09%), Postives = 48/66 (72.73%), Query Frame = 1
Query: 1 RTDNQIQSTIRKTFISCTVLTVAHRLNTIMDCDRIMVLDAGNIVEFDLPYKLLQIPNGHFNQLVQQ 198
RTD IQ IR+ F CTVLT+AHRLNTI+D D+IMVLD+G + E+D PY LLQ F ++VQQ
Sbjct: 1210 RTDELIQKKIREKFAHCTVLTIAHRLNTIIDSDKIMVLDSGRLKEYDEPYVLLQNKESLFYKMVQQ 1275
The following BLAST results are available for this feature:
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