TCONS_00012744 (transcript) - C. hemisphaerica

Overview
NameTCONS_00012744
Unique NameTCONS_00012744
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length683

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00012744 ID=TCONS_00012744|Name=TCONS_00012744|organism=Clytia hemisphaerica|type=transcript|length=683bp
cTGTGCAATAATCTTCAACTTTTCCAAAGGCGCAGTCAACGTTCTTGAGG
CTATTCCAGCAACCCCACCTGCAATCATGAACTGATAAAGTGGCATTTCA
GCAGGAGGTATACTAATAGGTACAACATCAGAACCAAAATCTAGTCCTTC
ACCTGTAGACCATAGGTTAGCAATAAACTGCATGTTGGGTGATGGAACAT
CACCAAAAAAGGTACAAAATTCATCAAAACTGATTCTTTGGTCACCGTCA
TTATCCATTGCATTTAGAATAGCATTAATTTTACGGCTGCTAACTTTTAT
GCCAGTTTTTTGCAACACTTGTACAATTTCATTGTGATCAATAAATCCAT
TTCGATTTGTGTCTACAGCATTAAATGTCTTTCTTAAACGATTCCGAACA
AAGTCTGAAAATTGGTTGAAATCGAGTCCTTCTCTAACTTCTTTGTTATA
ATTTACAGCACATTTACTGTAACGTTGGAAATCGTCTTTATCCGTATCGT
CTAGCTTCAGTTCAATATTTTTACAGCAAATTTGTAATTCTTCCCAATCT
ATTGAGCCGTCTTGCGAAACATCAATGGAAAGGAACGCTTCCTTTAACTT
CTCTCTAAGCTCCTTAGACATTCTCTTCTATATCATATATCATCAAATTT
CTTATAATCCTTACTCTGTTATGATGATGAAAC
Run BLAST on NCBI

transcript from alignment at sc0000147:320312..321046-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00012744 ID=TCONS_00012744|Name=TCONS_00012744|organism=Clytia hemisphaerica|type=transcript|length=735bp|location=Sequence derived from alignment at sc0000147:320312..321046- (Clytia hemisphaerica)
CTGTGCAATAATCTTCAACTTTTCCAAAGGCGCAGTCAACGTTCTTGAGG
CTATTCCAGCAACCCCACCTGCAATCATGAACTGATAAAGTGGCATTTCA
GCAGGAGGTATACTAATAGGTACAACATCAGAACCAAAATCTAGTCCTTC
ACCTGTAGACCATAGGTTAGCAATAAACTGCATGTTGGGTGATGGAACAT
CACCAAAAAAGGTACAAAATTCATCAAAACTGATTCTTTGGTCACCGTCA
TTATCCATTGCATTTAGAATAGCATTAATTTTACGGCTGCTAACTTTTAT
GCCAGTTTTTTGCAACACTTGTACAATTTCATTGTGATCAATAAATCCAT
TTCGATTTGTGTCTACAGCATTAAATGTCTTTCTTAAACGATTCCGAACA
AAGTCTGAAAATTGGTTGAAATCGAGTCCTTCTCTAACTTCTTTGTTATA
ATTTACAGCACATTGACTGTAACGTTGGAAATCGTCTTTATCCGTNGTTA
TAATTTACAGGACATTTACTGTAACGTTGGAAATCGTCTTTATCCGTATC
GTCTAGCTTCAGTTCAATATTTTTACAGCAAATTTGTAATTCTTCCCAAT
CTATTGAGCCGTCTTGCGAAACATCAATGGAAAGGAACGCTTCCTTTAAC
TTCTCTCTAAGCTCCTTAGACATTCTCTTCTATATCATATATCATCAAAT
TTCTTATAATCCTTACTCTGTTATGATGATGAAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007145XLOC_007145Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00012744-exon-sc0000147-1575043694:320586..321046TCONS_00012744-exon-sc0000147-1575043694:320586..321046Clytia hemisphaericaexon
TCONS_00012744-exon-sc0000147-1575043694:320312..320533TCONS_00012744-exon-sc0000147-1575043694:320312..320533Clytia hemisphaericaexon
TCONS_00012744-exon-sc0000147-1510915933:320586..321046TCONS_00012744-exon-sc0000147-1510915933:320586..321046Clytia hemisphaericaexon
TCONS_00012744-exon-sc0000147-1510915933:320312..320533TCONS_00012744-exon-sc0000147-1510915933:320312..320533Clytia hemisphaericaexon
TCONS_00012744-exon-sc0000147-1491911889:320586..321046TCONS_00012744-exon-sc0000147-1491911889:320586..321046Clytia hemisphaericaexon
TCONS_00012744-exon-sc0000147-1491911889:320312..320533TCONS_00012744-exon-sc0000147-1491911889:320312..320533Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000147supercontigsc0000147:320312..321046 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.05871	0	26.6039	21.4285	18.6616	6.60428	0	0	0	0	5.4144	0	0	0	0	0	0	0	0.555751	1.50042	0	0	0	0	0	0	0	0	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002067Mit_carrier
IPR002048EF_hand_dom
IPR018247EF_Hand_1_Ca_BS
IPR011992EF-hand-dom_pair
Vocabulary: Biological Process
TermDefinition
GO:0055085transmembrane transport
Vocabulary: Molecular Function
TermDefinition
GO:0005509calcium ion binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0055085 transmembrane transport
molecular_function GO:0005509 calcium ion binding
Blast
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BLAST of TCONS_00012744 vs. Swiss-Prot (Human)
Match: SCMC1 (Calcium-binding mitochondrial carrier protein SCaMC-1 OS=Homo sapiens GN=SLC25A24 PE=1 SV=2)

HSP 1 Score: 95.5153 bits (236), Expect = 1.820e-22
Identity = 62/202 (30.69%), Postives = 111/202 (54.95%), Query Frame = -3 
Query:    1 FLSIDVSQDGSIDWEELQICCKNIELKLDDTDKDDFQRYSKCAVNYNKEVREGLDFNQFSDFVRN---RLRKTFNAVDTNRNGFIDHNEIVQVLQKTGIKVSSRKINAILNAMDNDGDQRISFDEFCTFFGDVPSPNMQFIANLWSTGEGLDFG-SDVVPISIPPAEMPLYQF---MIAGGVAGIASRTLTAPLEKLKIIAQ 585
            F ++D + DG +D  ELQ   +N+ + L    ++    ++   VN + +    LDF +F  ++++   +++  F ++D N +G I+ +EIVQ LQ  G+ +S ++   IL ++D DG   + ++E+  +F   P  +++ I   W    G+D G S  +P      E    Q+   ++AGG+AG  SRT TAPL++LKI+ Q
Sbjct:   28 FQALDRNGDGVVDIGELQEGLRNLGIPLGQDAEEKI--FTTGDVNKDGK----LDFEEFMKYLKDHEKKMKLAFKSLDKNNDGKIEASEIVQSLQTLGLTISEQQAELILQSIDVDGTMTVDWNEWRDYFLFNPVTDIEEIIRFWKHSTGIDIGDSLTIPDEFTEDEKKSGQWWRQLLAGGIAGAVSRTSTAPLDRLKIMMQ 223
The following BLAST results are available for this feature:
BLAST of TCONS_00012744 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SCMC11.820e-2230.69Calcium-binding mitochondrial carrier protein SCaM... [more]
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