TCONS_00012739 (transcript) - C. hemisphaerica

Overview
NameTCONS_00012739
Unique NameTCONS_00012739
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1262

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00012739 ID=TCONS_00012739|Name=TCONS_00012739|organism=Clytia hemisphaerica|type=transcript|length=1262bp
CCTTTCTGCCATTCTAAACCCACCAATCCAGATCTATCAAAACCGTTACT
TTCAAAGACCGACGATGGTGACCAAGGAGAGCAGCAACTACCCGATGACA
GCATTGAATGTTAATTCAGATTTAACATTTTACAACGTTTCACCACGCAA
AGGAATGTTTCCAGTCACTTTCCCTTAATTTCACAAGGAGATGAACTCGA
AAAAAAAGCAACACCCATTTTGATATCACTTTTAACCCCTAAGGATTTTT
TTAATGTACTCGGTTCCAAAAAGCTTTGACCCTTAGGAATCACAATTATA
ACAACTCAATATGGGGATCTTGACGAAAGCATTGGATAAATTCATATTCA
CTCTTTATTACATTACACCACACCAAGCACCAGTAGAACAGGATTTATAC
TTAAAAATCCCCATCATCAACATACTTGCGTATAATGCATATTATTAGTA
ACCTTTCATATTCCTTATATTACGTCTCTTTTGATTGGACACCAGGTTTC
TAATATACAGTGACTTGGGCACTTAAATTAAGTAAAACTAAATATTTTTA
GGATTGCGTAAGTCTGCCCTTTGGAATGTTGATTCAGATTATACGATTGG
CCTTTTGGATAAAgcaagtacatgttttttataagaacaaactatataag
aacatagggcttcgatggccacaatgttaagaacaagttaagtacATTTT
AAGGCTCTGTGGTCTCAAAACAccctttttcttaggaaaatagccagaaa
tactcacaaaatggtcaaaataagaacaggttttagaacattttaggctt
aagactcaaaaagttaagaacatccgaaggcttcaaaaattttggatgtt
catataaaaaaacgtgtactgtttttaatttttaccttCTACCTTATGCA
CCTCACTGTATTTATTATTATCAATCTTGTTAACACTCATTTTAGTAGAG
AAATTTATCGATGCATTTACGAATTTtccgaaatttttgtcaatcaaaAT
GTCATTTGTGTTAACATCAACTATTGATTAATGAGACAAAAGATTCCTAA
AGTCTActcgctttaagtgtgcactctgTCAGCGTAATTAGATCATGTAC
TAATTCTCTTGGACTTTAGAATTCAAAGatcaattgaattttgaattttg
gattttggtgAATACACCTATCCCGAATTGTTATTtaggctttttgactt
ttttgttttaatgtttggaTGTGTCTATTTAGTTTCACAAAATTATATGT
CGCAaaactaaa
Run BLAST on NCBI

transcript from alignment at sc0000147:270735..272316-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00012739 ID=TCONS_00012739|Name=TCONS_00012739|organism=Clytia hemisphaerica|type=transcript|length=1582bp|location=Sequence derived from alignment at sc0000147:270735..272316- (Clytia hemisphaerica)
CCTTTCTGCCGTATGGATGAGTTTAATTATTCTTCTGTTTTATTTGACGG
GTTATTTTCAACAACCCTGTATTCTATCGTTAGATAATTCCTTTAAAGAT
CACTTCTGTGATACACTAAGTGCTTTAAACCTTTGTAATTTTTATGATTG
TCAAAACCTAAGAACAAATTAAAACAATTTTTGACTCAGATTTCACAGAT
TCTGAAAAGATATTCTCCTTATAAAGATGGAAATCAAACCTTCAGTCATT
TTTCGGAACCACCTTTTTATCCACAACTGCGGATGTGTTTTTACCCTATG
TGAAGATTTAGAATATCTCTGTCATTTTAGATTCTAAACCCACCAATCCA
GATCTATCAAAACCGTTACTTTCAAAGACCGACGATGGTGACCAAGGAGA
GCAGCAACTACCCGATGACAGCATTGAATGTTAATTCAGATTTAACATTT
TACAACGTTTCACCACGCAAAGGAATGTTTCCAGTCACTTTCCCTTAATT
TCACAAGGAGATGAACTCGAAAAAAAAGCAACACCCATTTTGATATCACT
TTTAACCCCTAAGGATTTTTTTAATGTACTCGGTTCCAAAAAGCTTTGAC
CCTTAGGAATCACAATTATAACAACTCAATATGGGGATCTTGACGAAAGC
ATTGGATAAATTCATATTCACTCTTTATTACATTACACCACACCAAGCAC
CAGTAGAACAGGATTTATACTTAAAAATCCCCATCATCAACATACTTGCG
TATAATGCATATTATTAGTAACCTTTCATATTCCTTATATTACGTCTCTT
TTGATTGGACACCAGGTTTCTAATATACAGTGACTTGGGCACTTAAATTA
AGTAAAACTAAATATTTTTAGGATTGCGTAAGTCTGCCCTTTGGAATGTT
GATTCAGATTATACGATTGGCCTTTTGGATAAAGCAAGTACATGTTTTTT
ATAAGAACAAACTATATAAGAACATAGGGCTTCGATGGCCACAATGTTAA
GAACAAGTTAAGTACATTTTAAGGCTCTGTGGTCTCAAAACACCCTTTTT
CTTAGGAAAATAGCCAGAAATACTCACAAAATGGTCAAAATAAGAACAGG
TTTTAGAACATTTTAGGCTTAAGACTCAAAAAGTTAAGAACATCCGAAGG
CTTCAAAAATTTTGGATGTTCATATAAAAAAACGTGTACTGTTTTTAATT
TTTACCTTCTACCTTATGCACCTCACTGTATTTATTATTATCAATCTTGT
TAACACTCATTTTAGTAGAGAAATTTATCGATGCATTTACGAATTTTCCG
AAATTTTTGTCAATCAAAATGTCATTTGTGTTAACATCAACTATTGATTA
ATGAGACAAAAGATTCCTAAAGTCTACTCGCTTTAAGTGTGCACTCTGTC
AGCGTAATTAGATCATGTACTAATTCTCTTGGACTTTAGAATTCAAAGAT
CAATTGAATTTTGAATTTTGGATTTTGGTGAATACACCTATCCCGAATTG
TTATTTAGGCTTTTTGACTTTTTTGTTTTAATGTTTGGATGTGTCTATTT
AGTTTCACAAAATTATATGTCGCAAAACTAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007142XLOC_007142Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00012739-exon-sc0000147-1575043694:272307..272316TCONS_00012739-exon-sc0000147-1575043694:272307..272316Clytia hemisphaericaexon
TCONS_00012739-exon-sc0000147-1575043694:270735..271986TCONS_00012739-exon-sc0000147-1575043694:270735..271986Clytia hemisphaericaexon
TCONS_00012739-exon-sc0000147-1510915933:272307..272316TCONS_00012739-exon-sc0000147-1510915933:272307..272316Clytia hemisphaericaexon
TCONS_00012739-exon-sc0000147-1510915933:270735..271986TCONS_00012739-exon-sc0000147-1510915933:270735..271986Clytia hemisphaericaexon
TCONS_00012739-exon-sc0000147-1491911889:272307..272316TCONS_00012739-exon-sc0000147-1491911889:272307..272316Clytia hemisphaericaexon
TCONS_00012739-exon-sc0000147-1491911889:270735..271986TCONS_00012739-exon-sc0000147-1491911889:270735..271986Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000147supercontigsc0000147:270735..272316 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.55405	1.38755	7.16814	10.6557	2.86617	2.77188	2.47361	2.88124	1.45063	2.42903	1.87791	1.37028	3.43115	3.30741	3.00757	2.83605	1.29001	1.89461	2.58214	3.71726	2.12019	3.06179	2.01085	2.46084	2.49991	4.20244	2.83829	2.69822	2.4349	2.44284
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00012739 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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