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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00012724 ID=TCONS_00012724|Name=TCONS_00012724|organism=Clytia hemisphaerica|type=transcript|length=2065bpRun BLAST on NCBI protein sequence of TCONS_00012724-protein >TCONS_00012724-protein ID=TCONS_00012724-protein|Name=TCONS_00012724-protein|organism=Clytia hemisphaerica|type=polypeptide|length=554bp MEEKTDERTYEDAIQRLNNLQTNASVLANMKKEKEIGKKHLESLPAMRKFRun BLAST on NCBI transcript from alignment at sc0000147:95474..115926- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00012724 ID=TCONS_00012724|Name=TCONS_00012724|organism=Clytia hemisphaerica|type=transcript|length=20453bp|location=Sequence derived from alignment at sc0000147:95474..115926- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000147:95474..115926- >TCONS_00012724 ID=TCONS_00012724|Name=TCONS_00012724|organism=Clytia hemisphaerica|type=CDS|length=28305bp|location=Sequence derived from alignment at sc0000147:95474..115926- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00012724 vs. Swiss-Prot (Human)
Match: FOLC (Folylpolyglutamate synthase, mitochondrial OS=Homo sapiens GN=FPGS PE=1 SV=3) HSP 1 Score: 399.053 bits (1024), Expect = 2.308e-129 Identity = 233/573 (40.66%), Postives = 326/573 (56.89%), Query Frame = 2
Query: 335 YEDAIQRLNNLQTNASVLANMKKEKEIGKKHLESLPAMRKFLERSKIDVNKLDRLNIIHVSGTKGKGSVCAFCESILRQYGLKTGFYSSPHLVEVGERIRINGKPLDRDLFTKYFFQLYDRLSETAVEHDGVMPGYFRFLTLMAFHVYLQENVDVAVLEVGLGGTYDCTNVINTPIVCGITKLEIDHAAVLGKEIHQIAAHKAGIMKPDRPAITIEQVKEAEDVLFEKSKEIKTPLYRIPRLKDFQENIED--FGIKGHHQEVNAVMAIQLARVWCYEKQDILQQRCPEKVEE-LRSIITKSPYENADDESRLDAFNLPPSFIQGLAEAKWLGRCQYHRKDDNFSYFLDGAHTKSSVEAFISWYLEVSGKYCEGFENIS-----KILVFFITGERDSDIILKKLSVIDFEYVVFCPTIFDEKLTNANSDLTNYNRSRDGRLRKCFELEQKWLLMNVXXXXXXXXXXXXLVNSTQKNSQGVS------------SSKTGVFPSITSAMKWIKYSKEQRDE--KPPMNDEYNPDYPIE------LQHSDHVQVLVTGSLHLVGGILKFLGPGSYQ 1969
Y+DA++ LN LQTNA L +K+++ + LE AM +L RS + V LDRLNIIHV+GTKGKGS CAF E ILR YGLKTGF+SSPHLV+V ERIRING+P+ +LFTKYF++LY RL ET MP YFRFLTLMAFHV+LQE VD+AV+EVG+GG YDCTN+I P+VCG++ L IDH ++LG + +IA K GI K PA T+ Q + VL +++++I PLY P L+ +E G++G HQ NA +A+QLA W ++QD P+ L + +P RL GL +W GR Q R+ +++LDGAHT SS +A + W+ + +G E S ++L+F TG+RD +LK L F+Y VFCP + E + N+D N+ + D L +C E +Q W ++ + + + L ++ G + S+ + VF I+ A++WI + RD +PP + +P+ L+ + + VLVTGSLHLVGG+LK L P Q
Sbjct: 45 YQDAVRMLNTLQTNAGYLEQVKRQRGDPQTQLE---AMELYLARSGLQVEDLDRLNIIHVTGTKGKGSTCAFTECILRSYGLKTGFFSSPHLVQVRERIRINGQPISPELFTKYFWRLYHRLEETKDGSCVSMPPYFRFLTLMAFHVFLQEKVDLAVVEVGIGGAYDCTNIIRKPVVCGVSSLGIDHTSLLGDTVEKIAWQKGGIFKQGVPAFTVLQPEGPLAVLRDRAQQISCPLYLCPMLEALEEGGPPLTLGLEGEHQRSNAALALQLAHCW-LQRQDRHGAGEPKASRPGLLWQLPLAPVFQPTSHMRL-----------GLRNTEWPGRTQVLRRGP-LTWYLDGAHTASSAQACVRWFRQA----LQGRERPSGGPEVRVLLFNATGDRDPAALLKLLQPCQFDYAVFCPNL-TEVSSTGNADQQNFTVTLDQVLLRCLEHQQHWNHLD------EEQASPDLWSAPSPEPGGSASLLLAPHPPHTCSASSLVFSCISHALQWI---SQGRDPIFQPPSPPKGLLTHPVAHSGASILREAAAIHVLVTGSLHLVGGVLKLLEPALSQ 587 The following BLAST results are available for this feature:
BLAST of TCONS_00012724 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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