|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00012705 ID=TCONS_00012705|Name=TCONS_00012705|organism=Clytia hemisphaerica|type=transcript|length=3624bpRun BLAST on NCBI transcript from alignment at sc0000147:5656..16822- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00012705 ID=TCONS_00012705|Name=TCONS_00012705|organism=Clytia hemisphaerica|type=transcript|length=11167bp|location=Sequence derived from alignment at sc0000147:5656..16822- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00012705 vs. Swiss-Prot (Human)
Match: MTMR5 (Myotubularin-related protein 5 OS=Homo sapiens GN=SBF1 PE=1 SV=3) HSP 1 Score: 301.212 bits (770), Expect = 1.594e-83 Identity = 229/745 (30.74%), Postives = 355/745 (47.65%), Query Frame = 3
Query: 3 DEEVIPETIENFRMLLRRSRWPLSVYNTFAFNYEA------PPVLHRTYSQRQRALRR-----THKSIN-AHLKKKGVDSV----KGRSASDDLE-----AEEMQQVLFEQEN--RGADR-----LKESPICKDYERLGL----CEITKISASPWRISMANFHYNVCRSYPAVVVIPSKVSDDSLIKVAKNHRLNRFPTAVWRHKRTKGTLLRSGALNRSVLTAVLRTGLGGRQTMGNHSANITDDEQFFTEIVNASHLYQHKGQTQTVSSGAALSL---------------QAMSDDFASMFEGSDAFQRSAAEISE----IKNWEPANLYIF-TRGTPKVNKMESSQKXXXXXXXXXXXXXXKASFSKLSKVC---CPSSISNESHFLSSFEESKWXXXXXXXXXXXCAVANLIVIQGSSCLVSLGDGSEVTSQVISLVQILSDPYYRTIAGFKVLIEKDWLAFGYRFSYRGNHTXXXXXXX-XXXXXXXLDCVHQIIEQYPHAFEFNNYFIKLIAYHQTSMRFNTFFLDSEHERYQNGWFPDSEKVNPMTVKSDTSVKGKTNLVRNKKEANLRXXXXXXXXXXXXXXXXXXVSLWDYLDIQGNKYTLFQSFLYHPNLHKGILQPFCNISNLEVWDYLTVENLFTGPTYDVEMMADFEMANPGTXFTGPTYDVEMMADFEMANPGTESSASADIDREDLQRCVTGCYGSTQEFPRDEVTYLLSELVRLRDEMDQSNRQWTDTW 2069
DEEV ++ E FR L + R+P + TFAF + PP + + R L R K+I H+ +K + +G+ +D E +EE++ + + +DR L E C+DY+RLGL +++ + P+RIS N Y +CRSYP ++++P V D++L +V++ +R NRFP WR R+K LLRSG L+ + + + ++ + E++ +V++ Y T+S ++ + + D S G DA A + A LYI + K + + Q+ +V +++ + QVKASF KL K C CP++ + + FL S E+S+WL Q+ +LQ+S V L+ GSS LV L DG ++T+QV+SLVQ+LSDP+YRT+ GF++L+EK+WL+FG+RFS+RG HT Q + P F QFLDCVHQ+ Q+P FEF+ +++K + YH S RF TF LDS++ER + G + KG+ + + R S+W+Y+D + +F +++Y P +L+P+ N+SNL+VWD+ T E L GP YD E+ G G S +R V CY S D ++ LL EL RL E+ Q +W DTW
Sbjct: 996 DEEVGSDSAELFRKQLHKLRYPPDIRATFAFTLGSAHTPGRPPRVTKDKGPSLRTLSRNLVKNAKKTIGRQHVTRKKYNPPSWEHRGQPPPEDQEDEISVSEELEPSTLTPSSALKPSDRMTMSSLVERACCRDYQRLGLGTLSSSLSRAKSEPFRISPVNRMYAICRSYPGLLIVPQSVQDNALQRVSRCYRQNRFPVVCWRSGRSKAVLLRSGGLHGKGVVGLFKAQNAPSPGQSQADSSSLEQEKYLQAVVSSMPRYADASGRNTLSGFSSAHMGSHGKWGSVRTSGRSSGLGTDVGSRLAGRDALAPPQANGGPPDPGFLRPQRAALYILGDKAQLKGVRSDPLQQWELVPIEVFEARQVKASFKKLLKACVPGCPAAEPSPASFLRSLEDSEWLIQIHKLLQVSVLVVELL-DSGSSVLVGLEDGWDITTQVVSLVQLLSDPFYRTLEGFRLLVEKEWLSFGHRFSHRGAHTLAGQSSGFTPVFLQFLDCVHQVHLQFPMEFEFSQFYLKFLGYHHVSRRFRTFLLDSDYERIELGLLYEE--------------KGE-----RRGQVPCR-------------------SVWEYVDRLSKRTPVFHNYMYAPE-DAEVLRPYSNVSNLKVWDFYTEETLAEGPPYDWELAQGPPEPPEEERSDG----------------GAPQSR---------RRVVWPCYDSCPRAQPDAISRLLEELQRLETELGQPAERWKDTW 1675 HSP 2 Score: 96.6709 bits (239), Expect = 5.376e-20 Identity = 42/101 (41.58%), Postives = 66/101 (65.35%), Query Frame = 3
Query: 2484 RNFKGTLYKRGHLLKQWKPRWFVLDAERNHLTYYDSEADTQLQGYIDLGELRTCRLMQVPPGAAKVGDARSYFELETTKRVYQLLAPNGDTAKEWVERLNA 2786
R+++GTLYK+G +K WK RWFVLD ++ L YYD DT+ +G IDL E+ GA K D +++F+++TT+RVY A + +A++WV+R+ +
Sbjct: 1762 RSYEGTLYKKGAFMKPWKARWFVLDKTKHQLRYYDHRVDTECKGVIDLAEVEAVAPGTPTMGAPKTVDEKAFFDVKTTRRVYNFCAQDVPSAQQWVDRIQS 1862 The following BLAST results are available for this feature:
BLAST of TCONS_00012705 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.