TCONS_00012680 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00012680
Unique Name	TCONS_00012680
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	2107

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at sc0000147:234352..239148+
coding sequence from alignment at sc0000147:234352..239148+

transcript sequence

>TCONS_00012680 ID=TCONS_00012680|Name=TCONS_00012680|organism=Clytia hemisphaerica|type=transcript|length=2107bp
tttaaagaaaaaaacatagaaaGATAATCACAAACCTCTATCCTTTTAAA
CATATTGATCAGGTTTATCCCTGACTGTTGATTTGACTTGATTTGTTaaa
taattccaaaaattttatagttgaaaaatttttcgcgaaCAAGCTGAGGT
TCGGACCTATAACTTCTAGTTTTAGAAATGCAAAATCGACTTCTTGGAAA
AGCAAAGAAGATAACTATTGTAcaatcaaaaacgaaagtgaaagttgatt
cgaaattattttttctgagtttttcaaaaaaataaaaatattgatcaaCC
ACCCAGGACAAGCCAGGAGAATGTCTCTGTTTCACTATGTAACATACAAA
TATATTATCATCAAGGATAAACGGCTTGGAATAGCCTACTATATATTGGC
ATTTCTCATAATATTTTATACATTGGTTCAGCTCTTGGTCAACAAATCAT
ATTTACAGTATGATTCCTCACCAAGTGGAAACATGAGAATCCTTGTCAAC
ACGCCCACAAAACTTCAAAACGATGAAAATGAATATAATATCAATCCTGA
TTATTGCAAACAAAAGGAAAGTGCAAACAGTACAATATGTAGAAAACTAG
ATGGGTTATCAATTAACTGGCCAATTGAATCACGTTCTGTTACTCTTGCT
ACAtttattaaagaaaaatggCAAAGACCAAAAGATTGTCAATATGCTCT
TGTTTATGATCCAGAAAATCCAGTAAAATATGAAGATTTGAGGGACGTCG
ATTACTATGCAGTAAATCCTGAGTTTGCTTTGATCAAGGTTGAACATTCG
TTTACAGCCTTTTCTGGCCAGCTGACACATTCACATCGCAGGATGTCTGG
ATCACTTGTTGATATGAATGGCAATACAATCAAAAGACTGAATTCTAATG
GAGTATCGAAGGTTGACAAGATTTTActcaaagattttttgattgCAGCC
AACGTGTCTTTAGATGAAGTGTCAGATGCTTTGAATGCAAAAGAGCGTAC
CTTTCGTCAAAACGGTTTAATACTTCATGTCTCGATCATGTATAAAAATT
CTGAGAAAATGTTGTATGGCGTCAATATTCCTGAATATACGTACCATGTC
AGAAGAGTACCGTTTTCCGATTATCGCTTGAAACAAGAAATTCCTATTGC
TAATAATGAGGGAAATATTTGTGAACGAATCATCAAGAAACGATATGCTG
TTAGAATTGAATTTCACCAAGGAGGAAAAATTGGTCAATTTTCATCAGCA
AATCTAGTCTTCCAATTGGTTTCAGTGATGGGTTTGTTAACACTGACAGC
AACGGTTATTGATGTTATAGCTCTTTATATTGTTCCAAACAAAGATAATT
ATAGGCAATACGTTTTTGATGAATCACCGGAATTTTCAGAGCAAGAAAAA
caaactttgaaagaaaatgtaaaTGATGAACAATCGAAGAAAGAtcaatg
aaattatttttagaCGCTATTCGAATTTTGAATATCTATTGTAACAGGTG
GGGGGGGGCATTCAAAAAATCTTATCTTATTcttctatgaaatgaaattt
ttaatttttttttgaaaaattagaacGCTTCGATGTTTTAGTATTGACCC
CACTTCCACgaatgtatttgtttttaattttgagaattttgaatATCTAT
AGTAAGACTGGGTCATTTTGAATAAAGGGAGAAATCTGACTTAATTCGAA
CTCGCTCTGCCCGTTTAAAGGCAATAACCCTTTGTTTGGCTAAAAATTgg
ttatttttcatctttcaaaagGCTTTTCCATTTTCAAGGTTATTTTAGCG
TGTTTGAATGATAGGCGATCAAAGCACTTCTCCAGCTAAAGGCTATGGAA
AACCTTGGAGACAAGTTAGAGGAGGGGATGTCAAGAAATTGGTGTGATCC
CATCCGCACTATAGGCAGAAAGTTATAGTTTCAAAGAGGAGATGGATTTA
GTAAATGTTTAAACTTTTTGATCACTACTGGCCATTGATATATCGATAGT
GACTTTTCAACGAATTATAACGAGATCAAGTATGTAAGGTTTTCAGAAAG
TAGTTCAATGCAACAGAATTTAAACCAATTCCATCCACCTtaaaaagtat
ccaaaat

Run BLAST on NCBI

protein sequence of TCONS_00012680-protein

>TCONS_00012680-protein ID=TCONS_00012680-protein|Name=TCONS_00012680-protein|organism=Clytia hemisphaerica|type=polypeptide|length=376bp
MSLFHYVTYKYIIIKDKRLGIAYYILAFLIIFYTLVQLLVNKSYLQYDSS
PSGNMRILVNTPTKLQNDENEYNINPDYCKQKESANSTICRKLDGLSINW
PIESRSVTLATFIKEKWQRPKDCQYALVYDPENPVKYEDLRDVDYYAVNP
EFALIKVEHSFTAFSGQLTHSHRRMSGSLVDMNGNTIKRLNSNGVSKVDK
ILLKDFLIAANVSLDEVSDALNAKERTFRQNGLILHVSIMYKNSEKMLYG
VNIPEYTYHVRRVPFSDYRLKQEIPIANNEGNICERIIKKRYAVRIEFHQ
GGKIGQFSSANLVFQLVSVMGLLTLTATVIDVIALYIVPNKDNYRQYVFD
ESPEFSEQEKQTLKENVNDEQSKKDQ

Run BLAST on NCBI

transcript from alignment at sc0000147:234352..239148+

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00012680 ID=TCONS_00012680|Name=TCONS_00012680|organism=Clytia hemisphaerica|type=transcript|length=4797bp|location=Sequence derived from alignment at sc0000147:234352..239148+ (Clytia hemisphaerica)
tttaaagaaaaaaacatagaaaGATAATCACAAACCTCTATCCTTTTAAA
CATATTGATCAGGTTTATCCCTGACTGTTGATTTGACTTGATTTGTTaaa
taattccaaaaattttatagttgaaaaatttttcgcgaaCAAGCTGAGGT
TCGGACCTATAACTTCTAGTTTTAGAAATGCAAAATCGACTTCTTGGAAA
AGCAAAGAAGATAACTATTGTAcaatcaaaaacgaaagtgaaagttgatt
cgaaattattttttctgagtttttcaaaaaaataaaaatattgatcaaCC
ACCCAGGACAAGCCAGGAGAATGTCTCTGTTTCACTATGTAACATACAAA
TATATTATCATCAAGGATAAACGGCTTGGAATAGCCTACTATATATTGGC
ATTTCTCATAATATTTTATACATTGGTTCAGCTCTTGGTCAACAAATCAT
ATTTACAGGTATGCTCGTCCGTCTATTATCTCTCCAGTCCAGTCACAATa
agtcttttgtttttatataccAGATTCTCCCATCCCATCATCACTCATTA
TCCAACATAATAGAACGTAATCAAATCTCAGTCAAATACAATCGAATCCG
TAAATTGCGGTAATACTGTATTCAATTAGGATTCTATCGTTTTGGAcagt
tgaaaatttcaatcggtcgattgcgtttgatttggttcgactggttagTT
GGATCATCAACTATTCCATCCGTTtaattgagattgtctggccaTTATCA
ACCATTTTTTGTGTCAATATCATCTGTCTCAATAATACTCATTTTTGTTT
AGCATTAAtaaagcttgttttagcctttttcattttattaaagattattt
tttatcatatCATGATAATATAATGCATACGTatgggtgcatgtcactag
tccgattTTTTCTAGTCAGACAGTAAAATAGtctgaatctataaaataaa
ttcacaatttagaaatctttttttccgacgtcacttttgtccgagaACGA
GCCATTattcactgagataatattaattaAAGTTCAATTTGGCggcataa
ttagaaataaagtaCCACTAACTTTAAttacagccccccccccaaaaaaa
aaaaaaagaaaaaaaaagaacaaaaggatttaaggatttttagggtgatg
aattttgtttttaatgtttagTATGATTCCTCACCAAGTGGAAACATGAG
AATCCTTGTCAACACGCCCACAAAACTTCAAAACGATGAAAATGAATATA
ATATCAATCCTGATTATTGCAAACAAAAGGAAAGTGCAAACAGTACAATA
TGTAGAAAACTAGATGGGTTATCAATTAACTGGCCAATTGAATCACGTTC
TGTTACTCTTGCTACAtttattaaagaaaaatggCAAAGACCAAAAGATT
GTCAATATGCTCTTGTTTATGATCCAGAAAATCCAGTAAAATATGAAGAT
TTGAGGTAATTAACAAAGCTGCACTAATCACACAGAttaaattttggtaa
atttagagGAATGTTTTCAAATATCATTACAGCAGGTTacattgtttcaa
tttttcaattaataACGACATGAAATCAAATGATAAGCACATGATTTGTG
CTGCAATAGAAAGCTaaaacatatatttttttcttgtgaaaatataaaaa
gttcCATTTTTCTATTTATACCGATTTTGTGTTTCAATTTATAGGGACGT
CGATTACTATGCAGTAAATCCTGAGTTTGCTTTGATCAAGGTTGAACATT
CGTTTACAGCCTTTTCTGGCCAGCTGACACATTCACATCGCAGGATGTCT
GGATCACTTGTTGATATGAATGGCAATACAATCAAAAGGTGATCATTTGT
ACATTTGGTTTTATATTTAAGGAGGATTATTTTCAGAGTATGTGAAATAG
TTTTGTCGATTTTTGAGCAgtcaaattactaatctactaATCTACAAATT
ATAACCACTATAGCTTTCACTCATGCaaactttgttaaaaaaatgggGTT
AATATGTAGGGAAGTATGATAATCGGTATGGTTCCAGACTACCGTATTAT
TACTTTGGTTTTTTAAGAGAAGCGTTTATTAGAGGggcattttattttga
agtaatACAGAGAGAATAATGCATGAACTCTGAGGTGTGCACTTTTGGTT
TTTGATTTACATCTCATTTTTTTACGATTGTAGCGCTGTTTTCTTTAGTA
CAATTGATTTCAAACCTATTTCGATCCCTTTTATTTTTAGACTGAATTCT
AATGGAGTATCGAAGGTTGACAAGATTTTActcaaagattttttgattgC
AGCCAACGTGTCTTTAGATGAAGTGTCAGATGCTTTGAATGCAAAAGAGC
GTACCTTTCGTCAAAACGGTTTAATACTTCATGTCTCGATCATGTATAAA
AATTCTGAGAAAATGTTGTATGGCGTCAAGTAAGGAAtacaaaacatttt
atttttattttttttgaaggtATTATTTTCGGGTACTCTCAGGTTCCAAA
TAAAATTGAGGTACGATAAAGAGTACTCGTATGGATCACACatacagatg
agatggagtttttataagatactttaataattggtcatttgatgtaataa
aaattggCGTTCTTTGNTTCCAGACTACCGTATTATTACTTTGGTTTTTT
AAGAGAAGCGTTTATTAGAGGggcattttattttgaagtaatACAGAGAG
AATAATGCATGAACTCTGAGGTGTGTACTTTTGGTTTTTGATTTACATCT
CATTTTTTTACGATTGTAGCGCTGTTTTCTTTAGTACAATTGATTTCAAA
CCTATTTCGATCCCTTTTATTTTTAGACTGAATTCTAATGGAGTATCGAA
GGTTGACAAGATTTTActcaaagattttttgattgCAGCCAACGTGTCTT
TAGATGAAGTGTCAGATGCTTTGAATGCAAAAGAGCGTACCTTTCGTCAA
AACGGTTTAATACTTCATGTCTCGATCATGTATAAAAATTCTGAGAAAAT
GTTGTATGGCGTCAAGTAAGGAAtacaaaacattttatttttattttttt
tgaaggtATTATTTTCGGGTACTCTCAGGTTCCAAATAAAATTGAGGTAC
GATAAAGAGTACTCATATGGATCACACatacagatgagatggagttttta
taagatactttaataattggtcatttgatgtaataaaaattggcgttctt
tagaaaaaataagaaaatcgtTTTATTActgttaacgaccaaccaaatca
attaagagcttgtaaaaactccatctcgtccccacACATACCCGTCACGT
CCCCGAAGTGCATTTTTTAATACTCGTTTTTCAAGGGTTTGCCTAACTTT
CTATTTAGTATTCCTGAATATACGTACCATGTCAGAAGAGTACCGTTTTC
CGATTATCGCTTGAAACAAGAAATTCCTATTGCTAATAATGAGGGAAATA
TTTGTGAACGAATCATCAAGAAACGATATGCTGTTAGAATTGAATTTCAC
CAAGGAGGAAAAATTGGTAAGGTATTTATTGATATAatgtgttgttgttt
ttttaagtttaatctTCACGGTCGTACAGTTTATTCTGCTTTTGTCATCC
GCACATTTGCTAAAATGTATTGTACGACTTTACTCCATGTTTGCTGCGAT
AGAAACGACTAAAATGGGATAAATGTTTGTGAGCATCATTGTGCTTATGA
TTAGTAGAAATAGAGAACGATTAAATTAAAAGCTTGGGAGTTTCtacttt
tctgaaatttcatagATTCTTGAAGCATAGCATTTGTGTATGTTTTTACA
GCATTTCATTTTTGGCCAGATTTGATTACAAAATTTGttcaatttgacaa
aaaatttactTCGCTCCGACTCAAGTCAAATCTATAAATTATTGGATTTG
TCTTTTTATCTTATATTTTCTAGGTCAATTTTCATCAGCAAATCTAGTCT
TCCAATTGGTTTCAGTGATGGGTTTGTTAACACTGACAGCAACGGTTATT
GATGTTATAGCTCTTTATATTGTTCCAAACAAAGATAATTATAGGCAATA
CGTTTTTGATGAATCACCGGAATTTTCAGAGCAAGAAAAAcaaactttga
aagaaaatgtaaaTGATGAACAATCGAAGAAAGAtcaatgaaattatttt
tagaCGCTATTCGAATTTTGAATATCTATTGTAACAGGTGGGGGGGGGCA
TTCAAAAAATCTTATCTTATTcttctatgaaatgaaatttttaatttttt
tttgaaaaattagaacGCTTCGATGTTTTAGTATTGACCCCACTTCCACg
aatgtatttgtttttaattttgagaattttgaatATCTATAGTAAGACTG
GGTCATTTTGAATAAAGGGAGAAATCTGACTTAATTCGAACTCGCTCTGC
CCGTTTAAAGGCAATAACCCTTTGTTTGGCTAAAAATTggttatttttca
tctttcaaaagGCTTTTCCATTTTCAAGGTTATTTTAGCGTGTTTGAATG
ATAGGCGATCAAAGCACTTCTCCAGCTAAAGGCTATGGAAAACCTTGGAG
ACAAGTTAGAGGAGGGGATGTCAAGAAATTGGTGTGATCCCATCCGCACT
ATAGGCAGAAAGTTATAGTTTCAAAGAGGAGATGGATTTAGTAAATGTTT
AAACTTTTTGATCACTACTGGCCATTGATATATCGATAGTGACTTTTCAA
CGAATTATAACGAGATCAAGTATGTAAGGTTTTCAGAAAGTAGTTCAATG
CAACAGAATTTAAACCAATTCCATCCACCTtaaaaagtatccaaaat

Coding sequence (CDS) from alignment at sc0000147:234352..239148+

>TCONS_00012680 ID=TCONS_00012680|Name=TCONS_00012680|organism=Clytia hemisphaerica|type=CDS|length=6786bp|location=Sequence derived from alignment at sc0000147:234352..239148+ (Clytia hemisphaerica)
ATGTCTCTGTTTCACTATGTAACATACAAATATATTATCATCAAGGATAA
ACGGCTTGGAATAGCCTACTATATATTGGCATTTCTCATAATATTTTATA
CATTGGTTCAGCTCTTGGTCAACAAATCATATTTACAGTATGATTCCTCA
CCAAGTGGAAACATGAGAATCCTTGTCAACACGCCCACAAAACTTCAAAA
CGATGAAAATGAATATAATATCAATCCTGATTATTGCAAACAAAAGGAAA
GTGCAAACAGTACAATATGTAGAAAACTAGATGGGTTATCAATTAACTGG
CCAATTGAATCACGTTCTGTTACTCTTGCTACAtttattaaagaaaaatg
gCAAAGACCAAAAGATTGTCAATATGCTCTTGTTTATGATCCAGAAAATC
CAGTAAAATATGAAGATTTGAGGGACGTCGATTACTATGCAGTAAATCCT
GAGTTTGCTTTGATCAAGGTTGAACATTCGTTTACAGCCTTTTCTGGCCA
GCTGACACATTCACATCGCAGGATGTCTGGATCACTTGTTGATATGAATG
GCAATACAATCAAAAGACTGAATTCTAATGGAGTATCGAAGGTTGACAAG
ATTTTActcaaagattttttgattgCAGCCAACGTGTCTTTAGATGAAGT
GTCAGATGCTTTGAATGCAAAAGAGCGTACCTTTCGTCAAAACGGTTTAA
TACTTCATGTCTCGATCATGTATAAAAATTCTGAGAAAATGTTGTATGGC
GTCAATATTCCTGAATATACGTACCATGTCAGAAGAGTACCGTTTTCCGA
TTATCGCTTGAAACAAGAAATTCCTATTGCTAATAATGAGGGAAATATTT
GTGAACGAATCATCAAGAAACGATATGCTGTTAGAATTGAATTTCACCAA
GGAGGAAAAATTGGTCAATTTTCATCAGCAAATCTAGTCTTCCAATTGGT
TTCAGTGATGGGTTTGTTAACACTGACAGCAACGGTTATTGATGTTATAG
CTCTTTATATTGTTCCAAACAAAGATAATTATAGGCAATACGTTTTTGAT
GAATCACCGGAATTTTCAGAGCAAGAAAAAcaaactttgaaagaaaatgt
aaaTGATGAACAATCGAAGAAAGAtcaatgaATGTCTCTGTTTCACTATG
TAACATACAAATATATTATCATCAAGGATAAACGGCTTGGAATAGCCTAC
TATATATTGGCATTTCTCATAATATTTTATACATTGGTTCAGCTCTTGGT
CAACAAATCATATTTACAGTATGATTCCTCACCAAGTGGAAACATGAGAA
TCCTTGTCAACACGCCCACAAAACTTCAAAACGATGAAAATGAATATAAT
ATCAATCCTGATTATTGCAAACAAAAGGAAAGTGCAAACAGTACAATATG
TAGAAAACTAGATGGGTTATCAATTAACTGGCCAATTGAATCACGTTCTG
TTACTCTTGCTACAtttattaaagaaaaatggCAAAGACCAAAAGATTGT
CAATATGCTCTTGTTTATGATCCAGAAAATCCAGTAAAATATGAAGATTT
GAGGGACGTCGATTACTATGCAGTAAATCCTGAGTTTGCTTTGATCAAGG
TTGAACATTCGTTTACAGCCTTTTCTGGCCAGCTGACACATTCACATCGC
AGGATGTCTGGATCACTTGTTGATATGAATGGCAATACAATCAAAAGACT
GAATTCTAATGGAGTATCGAAGGTTGACAAGATTTTActcaaagattttt
tgattgCAGCCAACGTGTCTTTAGATGAAGTGTCAGATGCTTTGAATGCA
AAAGAGCGTACCTTTCGTCAAAACGGTTTAATACTTCATGTCTCGATCAT
GTATAAAAATTCTGAGAAAATGTTGTATGGCGTCAATATTCCTGAATATA
CGTACCATGTCAGAAGAGTACCGTTTTCCGATTATCGCTTGAAACAAGAA
ATTCCTATTGCTAATAATGAGGGAAATATTTGTGAACGAATCATCAAGAA
ACGATATGCTGTTAGAATTGAATTTCACCAAGGAGGAAAAATTGGTCAAT
TTTCATCAGCAAATCTAGTCTTCCAATTGGTTTCAGTGATGGGTTTGTTA
ACACTGACAGCAACGGTTATTGATGTTATAGCTCTTTATATTGTTCCAAA
CAAAGATAATTATAGGCAATACGTTTTTGATGAATCACCGGAATTTTCAG
AGCAAGAAAAAcaaactttgaaagaaaatgtaaaTGATGAACAATCGAAG
AAAGAtcaatgaATGTCTCTGTTTCACTATGTAACATACAAATATATTAT
CATCAAGGATAAACGGCTTGGAATAGCCTACTATATATTGGCATTTCTCA
TAATATTTTATACATTGGTTCAGCTCTTGGTCAACAAATCATATTTACAG
TATGATTCCTCACCAAGTGGAAACATGAGAATCCTTGTCAACACGCCCAC
AAAACTTCAAAACGATGAAAATGAATATAATATCAATCCTGATTATTGCA
AACAAAAGGAAAGTGCAAACAGTACAATATGTAGAAAACTAGATGGGTTA
TCAATTAACTGGCCAATTGAATCACGTTCTGTTACTCTTGCTACAtttat
taaagaaaaatggCAAAGACCAAAAGATTGTCAATATGCTCTTGTTTATG
ATCCAGAAAATCCAGTAAAATATGAAGATTTGAGGGACGTCGATTACTAT
GCAGTAAATCCTGAGTTTGCTTTGATCAAGGTTGAACATTCGTTTACAGC
CTTTTCTGGCCAGCTGACACATTCACATCGCAGGATGTCTGGATCACTTG
TTGATATGAATGGCAATACAATCAAAAGACTGAATTCTAATGGAGTATCG
AAGGTTGACAAGATTTTActcaaagattttttgattgCAGCCAACGTGTC
TTTAGATGAAGTGTCAGATGCTTTGAATGCAAAAGAGCGTACCTTTCGTC
AAAACGGTTTAATACTTCATGTCTCGATCATGTATAAAAATTCTGAGAAA
ATGTTGTATGGCGTCAATATTCCTGAATATACGTACCATGTCAGAAGAGT
ACCGTTTTCCGATTATCGCTTGAAACAAGAAATTCCTATTGCTAATAATG
AGGGAAATATTTGTGAACGAATCATCAAGAAACGATATGCTGTTAGAATT
GAATTTCACCAAGGAGGAAAAATTGGTCAATTTTCATCAGCAAATCTAGT
CTTCCAATTGGTTTCAGTGATGGGTTTGTTAACACTGACAGCAACGGTTA
TTGATGTTATAGCTCTTTATATTGTTCCAAACAAAGATAATTATAGGCAA
TACGTTTTTGATGAATCACCGGAATTTTCAGAGCAAGAAAAAcaaacttt
gaaagaaaatgtaaaTGATGAACAATCGAAGAAAGAtcaatgaATGTCTC
TGTTTCACTATGTAACATACAAATATATTATCATCAAGGATAAACGGCTT
GGAATAGCCTACTATATATTGGCATTTCTCATAATATTTTATACATTGGT
TCAGCTCTTGGTCAACAAATCATATTTACAGTATGATTCCTCACCAAGTG
GAAACATGAGAATCCTTGTCAACACGCCCACAAAACTTCAAAACGATGAA
AATGAATATAATATCAATCCTGATTATTGCAAACAAAAGGAAAGTGCAAA
CAGTACAATATGTAGAAAACTAGATGGGTTATCAATTAACTGGCCAATTG
AATCACGTTCTGTTACTCTTGCTACAtttattaaagaaaaatggCAAAGA
CCAAAAGATTGTCAATATGCTCTTGTTTATGATCCAGAAAATCCAGTAAA
ATATGAAGATTTGAGGGACGTCGATTACTATGCAGTAAATCCTGAGTTTG
CTTTGATCAAGGTTGAACATTCGTTTACAGCCTTTTCTGGCCAGCTGACA
CATTCACATCGCAGGATGTCTGGATCACTTGTTGATATGAATGGCAATAC
AATCAAAAGACTGAATTCTAATGGAGTATCGAAGGTTGACAAGATTTTAc
tcaaagattttttgattgCAGCCAACGTGTCTTTAGATGAAGTGTCAGAT
GCTTTGAATGCAAAAGAGCGTACCTTTCGTCAAAACGGTTTAATACTTCA
TGTCTCGATCATGTATAAAAATTCTGAGAAAATGTTGTATGGCGTCAATA
TTCCTGAATATACGTACCATGTCAGAAGAGTACCGTTTTCCGATTATCGC
TTGAAACAAGAAATTCCTATTGCTAATAATGAGGGAAATATTTGTGAACG
AATCATCAAGAAACGATATGCTGTTAGAATTGAATTTCACCAAGGAGGAA
AAATTGGTCAATTTTCATCAGCAAATCTAGTCTTCCAATTGGTTTCAGTG
ATGGGTTTGTTAACACTGACAGCAACGGTTATTGATGTTATAGCTCTTTA
TATTGTTCCAAACAAAGATAATTATAGGCAATACGTTTTTGATGAATCAC
CGGAATTTTCAGAGCAAGAAAAAcaaactttgaaagaaaatgtaaaTGAT
GAACAATCGAAGAAAGAtcaatgaATGTCTCTGTTTCACTATGTAACATA
CAAATATATTATCATCAAGGATAAACGGCTTGGAATAGCCTACTATATAT
TGGCATTTCTCATAATATTTTATACATTGGTTCAGCTCTTGGTCAACAAA
TCATATTTACAGTATGATTCCTCACCAAGTGGAAACATGAGAATCCTTGT
CAACACGCCCACAAAACTTCAAAACGATGAAAATGAATATAATATCAATC
CTGATTATTGCAAACAAAAGGAAAGTGCAAACAGTACAATATGTAGAAAA
CTAGATGGGTTATCAATTAACTGGCCAATTGAATCACGTTCTGTTACTCT
TGCTACAtttattaaagaaaaatggCAAAGACCAAAAGATTGTCAATATG
CTCTTGTTTATGATCCAGAAAATCCAGTAAAATATGAAGATTTGAGGGAC
GTCGATTACTATGCAGTAAATCCTGAGTTTGCTTTGATCAAGGTTGAACA
TTCGTTTACAGCCTTTTCTGGCCAGCTGACACATTCACATCGCAGGATGT
CTGGATCACTTGTTGATATGAATGGCAATACAATCAAAAGACTGAATTCT
AATGGAGTATCGAAGGTTGACAAGATTTTActcaaagattttttgattgC
AGCCAACGTGTCTTTAGATGAAGTGTCAGATGCTTTGAATGCAAAAGAGC
GTACCTTTCGTCAAAACGGTTTAATACTTCATGTCTCGATCATGTATAAA
AATTCTGAGAAAATGTTGTATGGCGTCAATATTCCTGAATATACGTACCA
TGTCAGAAGAGTACCGTTTTCCGATTATCGCTTGAAACAAGAAATTCCTA
TTGCTAATAATGAGGGAAATATTTGTGAACGAATCATCAAGAAACGATAT
GCTGTTAGAATTGAATTTCACCAAGGAGGAAAAATTGGTCAATTTTCATC
AGCAAATCTAGTCTTCCAATTGGTTTCAGTGATGGGTTTGTTAACACTGA
CAGCAACGGTTATTGATGTTATAGCTCTTTATATTGTTCCAAACAAAGAT
AATTATAGGCAATACGTTTTTGATGAATCACCGGAATTTTCAGAGCAAGA
AAAAcaaactttgaaagaaaatgtaaaTGATGAACAATCGAAGAAAGAtc
aatgaATGTCTCTGTTTCACTATGTAACATACAAATATATTATCATCAAG
GATAAACGGCTTGGAATAGCCTACTATATATTGGCATTTCTCATAATATT
TTATACATTGGTTCAGCTCTTGGTCAACAAATCATATTTACAGTATGATT
CCTCACCAAGTGGAAACATGAGAATCCTTGTCAACACGCCCACAAAACTT
CAAAACGATGAAAATGAATATAATATCAATCCTGATTATTGCAAACAAAA
GGAAAGTGCAAACAGTACAATATGTAGAAAACTAGATGGGTTATCAATTA
ACTGGCCAATTGAATCACGTTCTGTTACTCTTGCTACAtttattaaagaa
aaatggCAAAGACCAAAAGATTGTCAATATGCTCTTGTTTATGATCCAGA
AAATCCAGTAAAATATGAAGATTTGAGGGACGTCGATTACTATGCAGTAA
ATCCTGAGTTTGCTTTGATCAAGGTTGAACATTCGTTTACAGCCTTTTCT
GGCCAGCTGACACATTCACATCGCAGGATGTCTGGATCACTTGTTGATAT
GAATGGCAATACAATCAAAAGACTGAATTCTAATGGAGTATCGAAGGTTG
ACAAGATTTTActcaaagattttttgattgCAGCCAACGTGTCTTTAGAT
GAAGTGTCAGATGCTTTGAATGCAAAAGAGCGTACCTTTCGTCAAAACGG
TTTAATACTTCATGTCTCGATCATGTATAAAAATTCTGAGAAAATGTTGT
ATGGCGTCAATATTCCTGAATATACGTACCATGTCAGAAGAGTACCGTTT
TCCGATTATCGCTTGAAACAAGAAATTCCTATTGCTAATAATGAGGGAAA
TATTTGTGAACGAATCATCAAGAAACGATATGCTGTTAGAATTGAATTTC
ACCAAGGAGGAAAAATTGGTCAATTTTCATCAGCAAATCTAGTCTTCCAA
TTGGTTTCAGTGATGGGTTTGTTAACACTGACAGCAACGGTTATTGATGT
TATAGCTCTTTATATTGTTCCAAACAAAGATAATTATAGGCAATACGTTT
TTGATGAATCACCGGAATTTTCAGAGCAAGAAAAAcaaactttgaaagaa
aatgtaaaTGATGAACAATCGAAGAAAGAtcaatga

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_007123	XLOC_007123	Clytia hemisphaerica	gene

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00012680-protein	TCONS_00012680-protein	Clytia hemisphaerica	polypeptide

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000147	supercontig	sc0000147:234352..239148 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
16.365	17.0795	17.1536	16.2852	4.43651	3.29664	4.21757	4.80337	3.5756	3.27782	3.14365	2.65161	2.60442	3.15657	6.07653	6.14517	4.6727	4.81814	4.36151	5.35413	4.5272	4.28419	9.36582	9.65475	2.27783	2.20306	7.12533	6.22298	10.4979	9.53313

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **INTERPRO**
Term	Definition
IPR001429	P2X_purnocptor

Vocabulary: **Biological Process**
Term	Definition
GO:0033198	response to ATP
GO:0098655	cation transmembrane transport

Vocabulary: **Molecular Function**
Term	Definition
GO:0001614	purinergic nucleotide receptor activity
GO:0004931	extracellular ATP-gated cation channel activity

Vocabulary: **Cellular Component**
Term	Definition
GO:0005887	integral component of plasma membrane

GO Annotation

GO Assignments

This transcript is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0098655	cation transmembrane transport
biological_process	GO:0033198	response to ATP
cellular_component	GO:0005887	integral component of plasma membrane
molecular_function	GO:0004931	extracellular ATP-gated cation channel activity
molecular_function	GO:0001614	purinergic nucleotide receptor activity

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00012680 vs. Swiss-Prot (Human)

BLAST of TCONS_00012680 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

You are here

TCONS_00012680 (transcript) - C. hemisphaerica