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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00012678 ID=TCONS_00012678|Name=TCONS_00012678|organism=Clytia hemisphaerica|type=transcript|length=2230bp
gTGTGAAGTGTGAAAATTTGTCATTAAATTGTTCGAAAGACTTTCTAGAA
AACACCAATACTATTCTCTAAAAGACAAACATGGAAATGATACAACAAAA
AGTGATCATTTTTGCGACTTTCATCCATTTAATCATAGCTGGGAAAACAT
TCAACAATTTCGGTCAACAGGTTCCACAAGAAACACCTTTTAACATTGTG
GATGTTCACCATGGACAACAAAGATGTTTCAGTATTTGCACTTACAGCCA
AAGATGCAtggcttttttaatcaaaaccaAACCTGATGGCAGCGGTGGTT
TCATATGTCAATTCTACGATCGGTCAGTTCGTATGTTAAACATGGCCATA
TCCTCAGTTACCGGAGTAacgttttattcaatttatgTCAATCTGAATAG
CTGTGCTGATTACTACAAAGCCGGTTACCGAAAGAATGACCTTTACGAGG
TGAAATTTTCGAACGGTACTATGGGACATGCCCAGTGTTACTTAGAATAC
AAGGACTGCTGGGATTGGCAACACAATCATCAACATGGAGACGTTTATGT
AACAAGAGAAATAGCACTGCCTTCAAGACTGGTAAAGGTCCGATGTTTTG
GTTCTTGGACGCTACTCCAAAAACGAACTAAAGCAGGGGGGACGGTCGAT
TTTCAACGAACATGGCAAGAATATAAACAAGGTTTCGGtaaaatggaaga
aaatgaaTTCTGGCTTGGTAATCAAATTATCCACGAAATGACAAACCGAG
GTATTGGTTACAAGATttatatttgggcaaaaaattttgatggaGCAAAG
GGGCACGCATCATACACAAACTTTCGTGTAGGACCCGAATCGGACAGTTA
TAGACTGGAATGTGCAACAGCTCCAACTTTCGGACAAAACGCTCTTTACA
ACGGCAATCGTTTTACGACTTTTGATCGTGACAACGACCAATTTCAGTCA
GGAAATTGTGCAGCATACCAAGACTTAAGCGGAGGTTTTTGGTATAGTAG
CTGTGGAGGGTTTTACCCAAATGGGCAATATATTCCTTATAAAGATCCTA
GTAAAATAAATGGCATTGTATGGAATGCTTGGATTAACAAACAAGAGAAT
TTGCAGAACATGGAAATCAGAATCGATCGAATGTCATAACAACAAGATGA
CTCACTACATATAATAGAACGTTCTCAGCTACCGAATCCTCCCACCTGCC
CAACCAGCAATACACATAATTCAGTACCATTCAGGGTTAGTAGCTTGGTT
TGAAAAGAATTCTTTTACACTTTGTTCatttgttgtattttttacacttt
ttttgttCAATAGCTTCGCAACATTTATTTTATAATAGCTTAAGATTTAT
AATATCTGAAGACTTATAATACCTAAAGATTTATAATATCTAAAGATTTG
TGTTGCATTAGAACTGATGAAATTGTTTGTAAATTTAATCGTTTCAactt
ctatatattaatagccgtagtctgtatgtcattttgtttgtcTGTCTGTC
CGTgtgttactttcgttttcggcacAGAGCCTGATAGAGCATAGGTAAGA
CTTCGAGTGCGGcctttattttaaaattaaagcCCCATCTACATTAagca
atttcaatttctgcctTTGCTTGTCCGCTCTTTCTTCTCTCATTTTTACA
TCTTTTCGAATGTCATTAACGACACTATTTGATTattgacattcgaattc
tttttaaattcaaaacaaaaaaatatctttattcATAAAAGAACAAATCt
caaataaaacataaaaataaaaaatactgcATGTTTTTACCGGCATTGCC
TGAAGAATCTCGTGTAGTGTTTTTAATTTAACTTCTCTATTTTGACATCA
AAGCTCTTGAAATCGTCGAAAGTTAGACGACACATTTAAAGCGAGCAAAG
CTGTCGTGGCTAGtatattatttgaaattttttatctgAATTTAGTCCCA
GTATCATACCTTGATTTCCTTTGATTTCTCGAACAAAACATCCTCTGCTT
CTTTAACTTGCTCAATGGTAATTGCTGGTCGATCCGGCTAAAAGAAAagg
agaaaattcaaaattcaaaaagttattcaacggtttttacaagaacgtga
gttgtttttttatgttttttcgtTTTGGCCGTGAATGATGAAGCTGAAAT
AATAAAGTCTGTCTCCTAATAATCTGCAGCGGAAGACAAAAAAGTCTATA
ACTTTTAATAGAATACGAACTACATACCGG Run BLAST on NCBI protein sequence of TCONS_00012678-protein >TCONS_00012678-protein ID=TCONS_00012678-protein|Name=TCONS_00012678-protein|organism=Clytia hemisphaerica|type=polypeptide|length=352bp
MEMIQQKVIIFATFIHLIIAGKTFNNFGQQVPQETPFNIVDVHHGQQRCF
SICTYSQRCMAFLIKTKPDGSGGFICQFYDRSVRMLNMAISSVTGVTFYS
IYVNLNSCADYYKAGYRKNDLYEVKFSNGTMGHAQCYLEYKDCWDWQHNH
QHGDVYVTREIALPSRLVKVRCFGSWTLLQKRTKAGGTVDFQRTWQEYKQ
GFGKMEENEFWLGNQIIHEMTNRGIGYKIYIWAKNFDGAKGHASYTNFRV
GPESDSYRLECATAPTFGQNALYNGNRFTTFDRDNDQFQSGNCAAYQDLS
GGFWYSSCGGFYPNGQYIPYKDPSKINGIVWNAWINKQENLQNMEIRIDR
MS Run BLAST on NCBI transcript from alignment at sc0000147:100524..103948+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00012678 ID=TCONS_00012678|Name=TCONS_00012678|organism=Clytia hemisphaerica|type=transcript|length=3425bp|location=Sequence derived from alignment at sc0000147:100524..103948+ (Clytia hemisphaerica)
gTGTGAAGTGTGAAAATTTGTCATTAAATTGTTCGAAAGACTTTCTAGAA
AACACCAATACTATTCTCTAAAAGACAAACATGGAAATGATACAACAAAA
AGTGATCATTTTTGCGACTTTCATCCATTTAATCATAGCTGGGAAAACAT
TCAACAATTTCGGTCAACAGGTTCCACAAGAAACACCTTTTAACATTGTG
GATGTTCACCATGGACAACAAAGATGTTTCAGTATTTGCACTTACAGCCA
AAGATGCAtggcttttttaatcaaaaccaAACCTGATGGCAGCGGTGGTT
TCATATGTCAATTCTACGATCGGTCAGTTCGTATGTTAAACATGGCCATA
TCCTCAGTTACCGGAGTAacgttttattcaatttatgTCAATCTGAATAG
CTGTGCTGATTACTACAAAGCCGGTTACCGAAAGAATGACCTTTACGAGG
TGAAATTTTCGAACGGTACTATGGGACATGCCCAGTGTTACTTAGAATAC
AAGGACTGCTGGGATTGGCAACACAATCATCAACATGGAGACGTTTATGT
AACAAGAGAAATAGCACTGCCTTCAAGACTGGTAAAGGTAAGGTTAATGT
GGTACATTTAAAAATATACATTCAGTTTGAACGGATTTATAAATGACACA
AACAACATGAAACTTTACAAGTCCTACAAACGAAGACTTAAATTTTCACT
TTGCTGAAATTCCCTTTATAGCAAAACCTGACAGGGGGTTAAATTCACAC
TTTTAGGTGAGATATATTTGAACGCTCTACTTGTCGGCTACAAGTAATGG
CTAATAAGCATCCTTCTTGTGTTCTCAGACAATTTTAATGACTAGCCAGT
ATATtgcaacagaaagttttaaagctTTTCAAGCGATGTCTTTAACAGGT
GTTTTTCTAAGCCTTCCGAGAGAAAACTGACGTTTAACCCTATCAACCCC
AAGCTTTTTGGAGTTGTGTAGCCTGGGGCGGaaaatctaccaccctcgat
tatcttttatctagaagagctatgccCATAAaaattggtacagatgttct
ctaTAATGACACAGCACCTCCGggaagaaaaataatttgttaacGTCATT
CATCAAAAAGCTATGACGTTATCACAAAATTCCCACCTGtcagaaaaaag
cccaaatgtATGGTTTACACAAAAATGtggtcgaaccaataaagatagtc
agattttgtttgaagattctgaaagatagAAGGTGTTTCTTTAACACAAT
AACCGGTTTTTTGTATTTCcattaagttttttttgttaaaatccatgctt
aaaataaataatgacgtcatcatttttcatttttatgaatttGTTTAATT
AACATTGTCAATACCTATCACGTATCAAAGTTTGATTATGGTTAAATAAA
TAGTCCAGGAATTATCGGcatcttaaaattttgagttttattaaggcgat
tttagctgggttttatgtcatgtttcacaatcaAGTCATTAAGCCTGATC
TGGACGCCCTACGACCAGGCTACGACCCTAAAAATTTGCCTTAATAtcct
taataagattttattaaaataaaagtCAGTCAGAAAGTTTCGCTCCAGAA
TCTTTCCTCAgagatatacacaaaagaacaCCAGCGTGGTATATTCTATC
CCCCCCGGGCTAATAGGGCTAAATTTGGCATTTGCATCAAAAGCCTTCAG
TTATAACTTTGTCAAAGTATTTGTTGTATGTATATGAATATAAGttaata
aaaaagaatgaacttTATTTGATAATTTAAAGGTCCGATGTTTTGGTTCT
TGGACGCTACTCCAAAAACGAACTAAAGCAGGGGGGACGGTCGATTTTCA
ACGAACATGGCAAGAATATAAACAAGGTTTCGGtaaaatggaagaaaatg
aaTTCTGGCTTGGTAATCAAATTATCCACGAAATGACAAACCGAGGTATT
GGTTACAAGATttatatttgggcaaaaaattttgatggaGCAAAGGGGCA
CGCATCATACACAAACTTTCGTGTAGGACCCGAATCGGACAGTTATAGAC
TGGAATGTGCAACAGCTCCAACTTTCGGACAAAACGCTCTTTACAACGGC
AATCGTTTTACGACTTTTGATCGTGACAACGACCAATTTCAGTCAGGAAA
TTGTGCAGCATACCAAGACTTAAGCGGAGGTTTTTGGTATAGTAGCTGTG
GAGGGTTTTACCCAAATGGGCAATATATTCCTTATAAAGATCCTAGTAAA
ATAAATGGCATTGTATGGAATGCTTGGATTAACAAACAAGAGAATTTGCA
GAACATGGAAATCAGAATCGATCGAATGTCATAACAACAAGATGACTCAC
TACATATAATAGAACGTTCTCAGCTACCGAATCCTCCCACCTGCCCAACC
AGCAATACACATAATTCAGTACCATTCAGGGTTAGTAGCTTGGTTTGAAA
AGAATTCTTTTACACTTTGTTCatttgttgtattttttacactttttttg
ttCAATAGCTTCGCAACATTTATTTTATAATAGCTTAAGATTTATAATAT
CTGAAGACTTATAATACCTAAAGATTTATAATATCTAAAGATTTGTGTTG
CATTAGAACTGATGAAATTGTTTGTAAATTTAATCGTTTCAacttctata
tattaatagccgtagtctgtatgtcattttgtttgtcTGTCTGTCCGTgt
gttactttcgttttcggcacAGAGCCTGATAGAGCATAGGTAAGACTTCG
AGTGCGGcctttattttaaaattaaagcCCCATCTACATTAagcaatttc
aatttctgcctTTGCTTGTCCGCTCTTTCTTCTCTCATTTTTACATCTTT
TCGAATGTCATTAACGACACTATTTGATTattgacattcgaattcttttt
aaattcaaaacaaaaaaatatctttattcATAAAAGAACAAATCtcaaat
aaaacataaaaataaaaaatactgcATGTTTTTACCGGCATTGCCTGAAG
AATCTCGTGTAGTGTTTTTAATTTAACTTCTCTATTTTGACATCAAAGCT
CTTGAAATCGTCGAAAGTTAGACGACACATTTAAAGCGAGCAAAGCTGTC
GTGGCTAGtatattatttgaaattttttatctgAATTTAGTCCCAGTATC
ATACCTTGATTTCCTTTGATTTCTCGAACAAAACATCCTCTGCTTCTTTA
ACTTGCTCAATGGTAATTGCTGGTCGATCCGGCTAAAAGAAAaggagaaa
attcaaaattcaaaaagttattcaacggtttttacaagaacgtgagttgt
ttttttatgttttttcgtTTTGGCCGTGAATGATGAAGCTGAAATAATAA
AGTCTGTCTCCTAATAATCTGCAGCGGAAGACAAAAAAGTCTATAACTTT
TAATAGAATACGAACTACATACCGG Coding sequence (CDS) from alignment at sc0000147:100524..103948+ >TCONS_00012678 ID=TCONS_00012678|Name=TCONS_00012678|organism=Clytia hemisphaerica|type=CDS|length=2118bp|location=Sequence derived from alignment at sc0000147:100524..103948+ (Clytia hemisphaerica)
ATGGAAATGATACAACAAAAAGTGATCATTTTTGCGACTTTCATCCATTT
AATCATAGCTGGGAAAACATTCAACAATTTCGGTCAACAGGTTCCACAAG
AAACACCTTTTAACATTGTGGATGTTCACCATGGACAACAAAGATGTTTC
AGTATTTGCACTTACAGCCAAAGATGCAtggcttttttaatcaaaaccaA
ACCTGATGGCAGCGGTGGTTTCATATGTCAATTCTACGATCGGTCAGTTC
GTATGTTAAACATGGCCATATCCTCAGTTACCGGAGTAacgttttattca
atttatgTCAATCTGAATAGCTGTGCTGATTACTACAAAGCCGGTTACCG
AAAGAATGACCTTTACGAGGTGAAATTTTCGAACGGTACTATGGGACATG
CCCAGTGTTACTTAGAATACAAGGACTGCTGGGATTGGCAACACAATCAT
CAACATGGAGACGTTTATGTAACAAGAGAAATAGCACTGCCTTCAAGACT
GGTAAAGGTCCGATGTTTTGGTTCTTGGACGCTACTCCAAAAACGAACTA
AAGCAGGGGGGACGGTCGATTTTCAACGAACATGGCAAGAATATAAACAA
GGTTTCGGtaaaatggaagaaaatgaaTTCTGGCTTGGTAATCAAATTAT
CCACGAAATGACAAACCGAGGTATTGGTTACAAGATttatatttgggcaa
aaaattttgatggaGCAAAGGGGCACGCATCATACACAAACTTTCGTGTA
GGACCCGAATCGGACAGTTATAGACTGGAATGTGCAACAGCTCCAACTTT
CGGACAAAACGCTCTTTACAACGGCAATCGTTTTACGACTTTTGATCGTG
ACAACGACCAATTTCAGTCAGGAAATTGTGCAGCATACCAAGACTTAAGC
GGAGGTTTTTGGTATAGTAGCTGTGGAGGGTTTTACCCAAATGGGCAATA
TATTCCTTATAAAGATCCTAGTAAAATAAATGGCATTGTATGGAATGCTT
GGATTAACAAACAAGAGAATTTGCAGAACATGGAAATCAGAATCGATCGA
ATGTCATAAATGGAAATGATACAACAAAAAGTGATCATTTTTGCGACTTT
CATCCATTTAATCATAGCTGGGAAAACATTCAACAATTTCGGTCAACAGG
TTCCACAAGAAACACCTTTTAACATTGTGGATGTTCACCATGGACAACAA
AGATGTTTCAGTATTTGCACTTACAGCCAAAGATGCAtggcttttttaat
caaaaccaAACCTGATGGCAGCGGTGGTTTCATATGTCAATTCTACGATC
GGTCAGTTCGTATGTTAAACATGGCCATATCCTCAGTTACCGGAGTAacg
ttttattcaatttatgTCAATCTGAATAGCTGTGCTGATTACTACAAAGC
CGGTTACCGAAAGAATGACCTTTACGAGGTGAAATTTTCGAACGGTACTA
TGGGACATGCCCAGTGTTACTTAGAATACAAGGACTGCTGGGATTGGCAA
CACAATCATCAACATGGAGACGTTTATGTAACAAGAGAAATAGCACTGCC
TTCAAGACTGGTAAAGGTCCGATGTTTTGGTTCTTGGACGCTACTCCAAA
AACGAACTAAAGCAGGGGGGACGGTCGATTTTCAACGAACATGGCAAGAA
TATAAACAAGGTTTCGGtaaaatggaagaaaatgaaTTCTGGCTTGGTAA
TCAAATTATCCACGAAATGACAAACCGAGGTATTGGTTACAAGATttata
tttgggcaaaaaattttgatggaGCAAAGGGGCACGCATCATACACAAAC
TTTCGTGTAGGACCCGAATCGGACAGTTATAGACTGGAATGTGCAACAGC
TCCAACTTTCGGACAAAACGCTCTTTACAACGGCAATCGTTTTACGACTT
TTGATCGTGACAACGACCAATTTCAGTCAGGAAATTGTGCAGCATACCAA
GACTTAAGCGGAGGTTTTTGGTATAGTAGCTGTGGAGGGTTTTACCCAAA
TGGGCAATATATTCCTTATAAAGATCCTAGTAAAATAAATGGCATTGTAT
GGAATGCTTGGATTAACAAACAAGAGAATTTGCAGAACATGGAAATCAGA
ATCGATCGAATGTCATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
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| TCONS_00012678-exon-sc0000147-1491911889:100524..101110 | TCONS_00012678-exon-sc0000147-1491911889:100524..101110 | Clytia hemisphaerica | exon |
| TCONS_00012678-exon-sc0000147-1510915933:100524..101110 | TCONS_00012678-exon-sc0000147-1510915933:100524..101110 | Clytia hemisphaerica | exon |
| TCONS_00012678-exon-sc0000147-1575043694:100524..101110 | TCONS_00012678-exon-sc0000147-1575043694:100524..101110 | Clytia hemisphaerica | exon |
| TCONS_00012678-exon-sc0000147-1491911889:102306..103948 | TCONS_00012678-exon-sc0000147-1491911889:102306..103948 | Clytia hemisphaerica | exon |
| TCONS_00012678-exon-sc0000147-1510915933:102306..103948 | TCONS_00012678-exon-sc0000147-1510915933:102306..103948 | Clytia hemisphaerica | exon |
| TCONS_00012678-exon-sc0000147-1575043694:102306..103948 | TCONS_00012678-exon-sc0000147-1575043694:102306..103948 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000147 | supercontig | sc0000147:100524..103948 + |
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00012678 vs. Swiss-Prot (Human)
Match: FIBA (Fibrinogen alpha chain OS=Homo sapiens GN=FGA PE=1 SV=2) HSP 1 Score: 116.316 bits (290), Expect = 1.289e-26 Identity = 84/248 (33.87%), Postives = 132/248 (53.23%), Query Frame = 3
Query: 474 GHAQCYLEYKDCWDWQHNHQHGDVYVTREIALP--SRLVKVRC-----FGSWTLLQKRTKAGGTVDFQRTWQEYKQGFGKME---ENEFWLGNQIIHEMTNRGIGYKIYIWAKNFDGAKGHASYTNFRVGPESDSYRLECATAPTFGQNALYNGN-------------RFTTFDRDNDQFQSGNCAAYQDLSGGFWYSSC------GGFYPNGQYIPYKD-PSKI-NGIVWNAWINKQENLQNMEIRI 1124
GHA+ +DC D H G I LP S++ V C G W L+Q+R G+++F RTWQ+YK+GFG + E EFWLGN +H +T RG ++ + +++ G + +A Y +FRVG E++ Y L+ ++ +AL G+ +F+TFDRD DQ++ NCA GG+WY++C G +YP G Y P + P +I NG+VW ++ +L+ + ++I
Sbjct: 622 GHAKSR-PVRDCDDVLQTHPSGTQSGIFNIKLPGSSKIFSVYCDQETSLGGWLLIQQRMD--GSLNFNRTWQDYKRGFGSLNDEGEGEFWLGNDYLHLLTQRGSVLRVEL--EDWAGNEAYAEY-HFRVGSEAEGYALQVSSYEGTAGDALIEGSVEEGAEYTSHNNMQFSTFDRDADQWEE-NCAEV--YGGGWWYNNCQAANLNGIYYPGGSYDPRNNSPYEIENGVVWVSFRGADYSLRAVRMKI 860
The following BLAST results are available for this feature:
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