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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00012668 ID=TCONS_00012668|Name=TCONS_00012668|organism=Clytia hemisphaerica|type=transcript|length=2184bp
ctttgaacagctcaaaattcaaaaattttctccgttgcccaaccatggtg
ggctttgtcaatttgCTCACATATACCTCAGCCCTGAAAACCAGGGCCCT
TTCTTGTGACCCACCAgttgtcaaacaatttttgatatgcataagtcaag
attacgtcatttttcctatcggaaacagcgaaaaaacttgaatttgaccc
ctgtgtattactaaaaatggaaaaacaggtcaaattccttccagattttt
cgggtgtttacGATAAGAAAAATGATATATTCTTGACTTACGCGAAATGA
GAATGTCAAAGAACTGATTGACAATCAAGTACATACCTATTTATaggaaa
aaattaagtttgtaTAACGGCATTTTATCCATACCAATGGGTCTAAACGT
GGTCAAAAACTGAATTTATCCAGAGAATATGAgtgtgaaaactaaatttt
ctaggcgtaatggcgtgaaatcgagaaaaattggcgtgatcgtgaaaatc
aaatttttcaggcgtgatggcgtgaaattggaaaaaaattggcgtgatgg
cgtgaattttgggtccgctgggggggcctcttaaAACATTCTTTCATCAA
ACTGCTACTAAATtataattttacaattttcctaTATAAAAAcgaaaagt
gaaaaagaaatcaTCTTAAAATCTTTCCTATCCACATTCAAATCTGGTCA
gagaaatgtttttttgtttgatttaccATCTGAAGTGATACAGTTGACTA
TTCTAGTAGTATGCTTTAAAAAAACCCTCCCCTGTAAATattccaatttc
aaaaaaattggcaccaTCTCAAGAGATTTCAGTCGATGGCGGATGACTTT
GAACGacttaaatttttgtttgccaTTAAGTATTTTTAGGGTATTCAATA
ACTAAAAAGAGAATACAGTGAAAGCTtggtgaaaaaaattgaagtgtTCA
CTCATTTGCTGAATCAAAATCGCAAAATGAAATCCTATAATTTAATGCCT
CAAACCATCGATCTCTCATGACCTTGGGTCTAGCAGCGATCTCATAAAAA
TTCTATTCTTCATATTTATTTCTACCGTGGCTACCACGTTTGAGCTTTCT
GTGGCGACCAAGTGTAAAGGTTTTATTGCGCAtgtgtgtcaatctaatca
ttaTCAAAAGAACTAAAAATGAATATATGTTATATTATAATTGAGCTCCC
ACATCAACAAGAAAGTACTACTTAAACCTTGAACTTAAACCTTCAGGTCT
AATCGTGGCATTAATTTATAATCTTTGGTTGTCGCCATGATTACTTTTCT
TTGTGTTGAATATGTGCTGAATAATTATCTCCATTTTTCCGAACAACCTG
TAGAATGGCTATTCGTCTTCACAGATCCAAATATGATTTCGACTTGTGAA
CCTTACGCACGGCACTCTTCTTTATTTCTTTGAGACTTTTTGTCTAAAAG
CTTAGCTCGTCCGTCCAGCTTCAACTTTCATGTCTTTGGACACTTCTAAA
TCACCAACATAAAAACACCACAATCATTATAATAGCACCTGCTCCAAAAA
TAACACCAAAAGTAATACCAAGAACTTCACCAATTGATAAATTACTTATT
CCGCCTGATCCACCACTTTCATCTAAGTATCCTCCTGAACCGCCTCTGTT
TCTTGATCTGCCTCTGGAGTCGCCCCTAGAGCCCCCTCTGGAGCTTCCCC
TAGAGCCACCTCTTGAGCCGCCTCCGCGCACTCCTCGTGGTTGAGGGTTT
GGGTCGGGAGAGCGTTTGACTCTCACAAGAACTTCCTCTTCGATATNGGT
TTGGGTCGGGAGAGCGTTTGACTCTCACAAGAACTTCCTCCTCGATACCA
TTGTCAAAATTTATAAAGTCTTGAATTTCATCATTTGCCAATTTTTGGTT
GTGAATACTAGGTTCTGCAGATACCATAGACTTGATTTCATTGCTCAAGT
CTTGTCCAAAGTTGAACGCAAAGATCAGGAACACCAAACAAGTCAATGTC
CTCAACATATTTGTCTGTATATTTCTTCAAAAAGCTCTGTCTTATGGTTG
AAGTAGTTATGACTTGTTGATACAATTCGTTATCCAattttcgacaaatt
tgataAGTCTACTTCGTATTTGTATTTATAGCTAATTATATAAACTATAA
CGTAATATATTGAAAGAGGAAAAGACACTACAAA Run BLAST on NCBI protein sequence of TCONS_00012668-protein >TCONS_00012668-protein ID=TCONS_00012668-protein|Name=TCONS_00012668-protein|organism=Clytia hemisphaerica|type=polypeptide|length=102bp
MLRTLTCLVFLIFAFNFGQDLSNEIKSMVSAEPSIHNQKLANDEIQDFIN
FDNGIEEEVLVRVKRSPDPNXYRRGSSCESQTLSRPKPSTTRSARRRLKR
WL Run BLAST on NCBI transcript from alignment at sc0000146:299602..301785 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00012668 ID=TCONS_00012668|Name=TCONS_00012668|organism=Clytia hemisphaerica|type=transcript|length=2184bp|location=Sequence derived from alignment at sc0000146:299602..301785 (Clytia hemisphaerica)
TTTGTAGTGTCTTTTCCTCTTTCAATATATTACGTTATAGTTTATATAAT
TAGCTATAAATACAAATACGAAGTAGACTtatcaaatttgtcgaaaatTG
GATAACGAATTGTATCAACAAGTCATAACTACTTCAACCATAAGACAGAG
CTTTTTGAAGAAATATACAGACAAATATGTTGAGGACATTGACTTGTTTG
GTGTTCCTGATCTTTGCGTTCAACTTTGGACAAGACTTGAGCAATGAAAT
CAAGTCTATGGTATCTGCAGAACCTAGTATTCACAACCAAAAATTGGCAA
ATGATGAAATTCAAGACTTTATAAATTTTGACAATGGTATCGAGGAGGAA
GTTCTTGTGAGAGTCAAACGCTCTCCCGACCCAAACCNATATCGAAGAGG
AAGTTCTTGTGAGAGTCAAACGCTCTCCCGACCCAAACCCTCAACCACGA
GGAGTGCGCGGAGGCGGCTCAAGAGGTGGCTCTAGGGGAAGCTCCAGAGG
GGGCTCTAGGGGCGACTCCAGAGGCAGATCAAGAAACAGAGGCGGTTCAG
GAGGATACTTAGATGAAAGTGGTGGATCAGGCGGAATAAGTAATTTATCA
ATTGGTGAAGTTCTTGGTATTACTTTTGGTGTTATTTTTGGAGCAGGTGC
TATTATAATGATTGTGGTGTTTTTATGTTGGTGATTTAGAAGTGTCCAAA
GACATGAAAGTTGAAGCTGGACGGACGAGCTAAGCTTTTAGACAAAAAGT
CTCAAAGAAATAAAGAAGAGTGCCGTGCGTAAGGTTCACAAGTCGAAATC
ATATTTGGATCTGTGAAGACGAATAGCCATTCTACAGGTTGTTCGGAAAA
ATGGAGATAATTATTCAGCACATATTCAACACAAAGAAAAGTAATCATGG
CGACAACCAAAGATTATAAATTAATGCCACGATTAGACCTGAAGGTTTAA
GTTCAAGGTTTAAGTAGTACTTTCTTGTTGATGTGGGAGCTCAATTATAA
TATAACATATATTCATTTTTAGTTCTTTTGAtaatgattagattgacaca
caTGCGCAATAAAACCTTTACACTTGGTCGCCACAGAAAGCTCAAACGTG
GTAGCCACGGTAGAAATAAATATGAAGAATAGAATTTTTATGAGATCGCT
GCTAGACCCAAGGTCATGAGAGATCGATGGTTTGAGGCATTAAATTATAG
GATTTCATTTTGCGATTTTGATTCAGCAAATGAGTGAacacttcaatttt
tttcaccaAGCTTTCACTGTATTCTCTTTTTAGTTATTGAATACCCTAAA
AATACTTAAtggcaaacaaaaatttaagtCGTTCAAAGTCATCCGCCATC
GACTGAAATCTCTTGAGAtggtgccaatttttttgaaattggaatATTTA
CAGGGGAGGGTTTTTTTAAAGCATACTACTAGAATAGTCAACTGTATCAC
TTCAGATggtaaatcaaacaaaaaaacatttctcTGACCAGATTTGAATG
TGGATAGGAAAGATTTTAAGAtgatttctttttcacttttcgTTTTTATA
taggaaaattgtaaaattataATTTAGTAGCAGTTTGATGAAAGAATGTT
ttaagaggcccccccagcggacccaaaattcacgccatcacgccaatttt
tttccaatttcacgccatcacgcctgaaaaatttgattttcacgatcacg
ccaatttttctcgatttcacgccattacgcctagaaaatttagttttcac
acTCATATTCTCTGGATAAATTCAGTTTTTGACCACGTTTAGACCCATTG
GTATGGATAAAATGCCGTTAtacaaacttaattttttcctATAAATAGGT
ATGTACTTGATTGTCAATCAGTTCTTTGACATTCTCATTTCGCGTAAGTC
AAGAATATATCATTTTTCTTATCgtaaacacccgaaaaatctggaaggaa
tttgacctgtttttccatttttagtaatacacaggggtcaaattcaagtt
ttttcgctgtttccgataggaaaaatgacgtaatcttgacttatgcatat
caaaaattgtttgacaacTGGTGGGTCACAAGAAAGGGCCCTGGTTTTCA
GGGCTGAGGTATATGTGAGcaaattgacaaagcccaccatggttgggcaa
cggagaaaatttttgaattttgagctgttcaaag Coding sequence (CDS) from alignment at sc0000146:299602..301785 >TCONS_00012668 ID=TCONS_00012668|Name=TCONS_00012668|organism=Clytia hemisphaerica|type=CDS|length=309bp|location=Sequence derived from alignment at sc0000146:299602..301785 (Clytia hemisphaerica)
ATGTTGAGGACATTGACTTGTTTGGTGTTCCTGATCTTTGCGTTCAACTT
TGGACAAGACTTGAGCAATGAAATCAAGTCTATGGTATCTGCAGAACCTA
GTATTCACAACCAAAAATTGGCAAATGATGAAATTCAAGACTTTATAAAT
TTTGACAATGGTATCGAGGAGGAAGTTCTTGTGAGAGTCAAACGCTCTCC
CGACCCAAACCNATATCGAAGAGGAAGTTCTTGTGAGAGTCAAACGCTCT
CCCGACCCAAACCCTCAACCACGAGGAGTGCGCGGAGGCGGCTCAAGAGG
TGGCTCTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00012668-exon-sc0000146-1491911889:299602..301785 | TCONS_00012668-exon-sc0000146-1491911889:299602..301785 | Clytia hemisphaerica | exon |
| TCONS_00012668-exon-sc0000146-1510915933:299602..301785 | TCONS_00012668-exon-sc0000146-1510915933:299602..301785 | Clytia hemisphaerica | exon |
| TCONS_00012668-exon-sc0000146-1575043694:299602..301785 | TCONS_00012668-exon-sc0000146-1575043694:299602..301785 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000146 | supercontig | sc0000146:299602..301785 . |
Blast
The following BLAST results are available for this feature:
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