TCONS_00012573 (transcript) - C. hemisphaerica

Overview
NameTCONS_00012573
Unique NameTCONS_00012573
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1408

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00012573 ID=TCONS_00012573|Name=TCONS_00012573|organism=Clytia hemisphaerica|type=transcript|length=1408bp
CCGCCTTCAGTAATACACTATGGACCACCACCTCCTCCTCCTTCAGTAAT
ACGCAGTGGACCATCTTCTTCTCGTTCAGCAATACGCAGTGGACCACCAC
ATCTTTCTCCTTCAGCGATACGCAGTGGACCACCACCTCCTCCTCCTTCA
GTAATACGCAGTGGACCACCACCTCCACCTTCAGCAACACGCAGTGAACC
ACCTCCTTCTCGTTCAGTAACACGCAGTCGACCACCACCTCCTCCTTCAG
TAATACGCAGTGGACCACCTCCTCCACCTTCAGCAATACATAGCGGAACA
CCTCCAGCTACATCGACTAATAAATTTTTTGAGCCACCTCCTGGTGTCTC
ATGGTTATCTAAAAGAAGCAATATGTTTCAACCGACCAAAAGAGAACCCC
CTGCACCTGACAATCTAAAAAGTAGCAGTGGTGATTGGCGAGTAAAACTC
AAATCATGGACCGTTGAAGATGTTTGCGATTGGCTGAAAGACATTTCTCT
GGAAGAATATTGTGAATTGTTCCGCTTTCATGCGATCGATGGTGTTGAGT
TGTTGGAACAGAATGAAGAATCACTAGTAGACGCTCTTAAAATAGAACGT
ATCGGTCACCGAAGGAAGATTATGAGGAATTTAACTAAAttattagaaaa
agaaaaagaagagaagAGAACTAAAGAAAAAGAGGAGGAAACGCCGGACG
AATTTCTTTGTCCGATAACTCNAGAGAAGaaggaaacaaaagaaaaagag
gaGGAAACACCGGACGAATTTCTCTGTCCGATAACTCAAGAGTTGATGAC
TGATCCTGTTATCGTGGCAGACGGTTACACATACGAACGAACATCAATCA
CTCAATGGTTTGAAACTGGAAACAATAGAAGTCCAATGACAAATTTACCG
TTGGAAAACCGAAACCTCGTTCCAAATAGATCCCTTAAAGACGCTATTAA
CAGACATCTTGGACAGTAATTCTATGGACACGAACACAAAAATTAAGTAC
AATTGTACCGGCCCTATCGTACACAACTTGTACACAATGTATTAATGAGT
CTTTTGGCAATCGATCAAGATTCCGTGGgacttttgatattttgatcaAA
CTGATTTGATAAAACAAAACGTAATGAACTACCATTTAGCTATATCAACT
TAAAAATTTATTAGATATAACACAGTTTAATTTCgataatttgaataaaa
aaactcGCAAATAAATACACTTCCATGAAACGAAAATAAAATCCAACAAT
TGTtaatttttcttaaagaaaatagtttttatGAACCAAAACAAAAGGCC
ATCATTGGTAAATTTCTTCATCTACGTATTTTTCATATCAACAGTTTCAA
CTCCAAGCCGAGTCCAAAATATAGTATTGCGTTCGTAATATTTTAAGGTC
TTGATATA
Run BLAST on NCBI

transcript from alignment at sc0000145:479028..483132-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00012573 ID=TCONS_00012573|Name=TCONS_00012573|organism=Clytia hemisphaerica|type=transcript|length=4105bp|location=Sequence derived from alignment at sc0000145:479028..483132- (Clytia hemisphaerica)
CCGCCTTCAGTAATACACTATGGACCACCACCTCCTCCTCCTTCAGTAAT
ACGCAGTGGACCATCTTCTTCTCGTTCAGCAATACGCAGTGGACCACCAC
ATCTTTCTCCTTCAGCGATACGCAGTGGACCACCACCTCCTCCTCCTTCA
GTAATACGCAGTGGACCACCACATCTTTCTCCTTCAGCGATACGCAGTGG
ACCACCACCTCCTCCTCCTTCAGTAATACGCAATGGACCACCACCTCCTC
CTCCTTCAGTAATACACTTTGGACTACCACCTCCTCCTTCATTAATACGC
AGTGGACCACCCCCTCCTCCAACTTTAGCAATGCACAGTGAACCACCTCT
TCCACCTTCAGCGATACGCAATGGACCACCACCTCCTCCTCCTTCTTCTT
CAGCAATACGCAGTCGACCACCACATCCTCCTCCTTCAGCGATGCAGAGT
GAACCACCACTTCCTCCTCCAGTAATGCGCGATGGCCCACCACCTCCTCC
TTCAGTAAAACGTAGTGAACCACCTCATCCTCCGCCTTCAGTAATACACT
ATGGACCACCACCTCCTCCTCCTTCAGTAATACGCAGTGGACCATCTTCT
TCTCGTTCAGCAATACGCAGTGGACCACCACATCTTTCTCCTTCAGCGAT
ACGCAGTGGACCACCACCTCCTCCTCCTTCAGTAATACGCAATGGACCAC
CACCACCTCCTCCTCCTTCAGCGATACGCAGTGGACCACCACATCTTTCT
CCTTCAGCGATACGCAGTGGACCACCACCTCCTCCTCCTTCAGTAATACG
CAATGGACCACCACCACCTCCTCCTCCTTCAGCGATACGCAGTGGACCAC
CACCTCCTCCACCTTCAGCAATACGCAATGGACCACCACCTCCTCCTTCA
TTAATACGCAGTGGACCACCCCCTCCTCCAACTTTAGCAATGCACAGTGA
ACCACCTCTTCCACCTTCAGCGATACGCAGTGGACCACCTCCTCCTCCTC
CTTCAGTAATACGCAGTGGAGCATCTACTCCACCTTCAGCAACACGCAGT
GAACCACCTCCTTCTCGTTCAGTAACACGCAGTGGACCACCACCTCATCC
TTCAGCAAAACGCAGTGAACCACCTCCTTCTCGTTCAGTAACACACAGTG
GACCACCACCTCCACCTTCAGCAACACGCAGTGAACCACCTCCTTCTCGT
TCAGTAACACGCAGTCGACCACCACCTCCTCCTTCAGTAATACGCAGTGG
ACCACCTCCTCCACCTTCAGCAATACATAGCGGAACACCTCCAGCTACAT
CGACTAATAAATTTTTTGAGCCACCTCCTGGTGTCTCATGGTTATCTAAA
AGAAGCAATATGTTTCAACCGACCAAAAGAGAACCCCCTGCACCTGACAA
TCTAAAAAGTAGCAGTGGTGATTGGCGAGTAAAACTCAAATCATGGACCG
TTGAAGATGTTTGCGATTGGCTGAAAGACATTTCTCTGGAAGAATATTGT
GAATTGTTCCGCTTTCATGCGATCGATGGTGTTGAGTTGTTGGAACAGAA
TGAAGAATCACTAGTAGACGCTCTTAAAATAGGTTGGTTAAAAACGTCAA
GTTCTATTCTTTTTTTAGCTGTTCTCCGTTCCCTTCGGCATTTGAAATAT
AGTTCGGAATGAGATTAAATATTAAATGCTTCTTTAAAATATAGTGACTG
CTCTTGAGATACGTTCATAGATCCACTATGGCACTATGTCTGGTCCCAAT
TTAGGCATTGACCAATTGCTGTCACACTTATCACATAGAAGCAAAAAAAA
ATAGATTTTACACTAGTTTCAATTGCAGACATAAAACTATTTCCTTTTAG
ATAACCTTTCGTTAAGGGCTACAAACATTACACTAATTTTATCACAATTC
CCGATTTCGCTTTGTTTTCAGAACGTATCGGTCACCGAAGGAAGATTATG
AGGAATTTAACTAAATTATTAGAAAAAGAAAAAGAAGAGAAGAGAACTAA
AGAAAAAGAGGAGGAAACGCCGGACGAATTTCTTTGTCCGATAACTCNAG
AGAAGAAGGAAACAAAAGAAAAAGAGGAGGAAACACCGGACGAATTTCTC
TGTCCGATAACTCAAGAGTTGATGACTGATCCTGTTATCGTGGCAGGTAA
AAAAAGAGATTGCAAATATATAATTTTCACAGCTCTGAATTATAATCACT
GTAATTAATTAGCGCCCCCACCCCCTTGAACCCTATTTTGGGTAACCCTA
CTGCCACTGCCTTTACGAAGACTGATATTATAATTTGTGAATTTTACCAC
TCTTTGAAGCATTTCGAAAATCTAGGATGCCTCCTCCCATTAACCTCCAA
ACCCGAAGGGCTAGACTCGTGACTCCAATAAGTAGTTTCATTTCCCATCC
AGAACGCATGCGCGTGGTTTTTCCACAAACACCGGATTAGAACTAAAAGC
TATCACTAGATTTCAAAAAATGCAGTCCTCCAAAGCAAAGGAACCACTAG
ATACAATCAGTAGTCATGATTACAGCTTTTATAAAATATCACACCAGGCA
CGTGGACTGGAAATAAGGGGCTTCACTTTTTGCTGCCTGGGAAAGGTTCG
AGATTCTACTTTAGCCCTTCGGGCTTTAAACTCAATGCCTCCTCCCTTAC
AGGGCGTTTCCCTTTGCTTAGGTACCCTTTCCTTAGGACCTTTAATCATC
CTAATCTATTAATTTTTCTTTCTATCATTCTTTAGACGGTTACACATACG
AACGAACATCAATCACTCAATGGTTTGAAACTGGAAACAATAGAAGTCCA
ATGACAAATTTACCGTTGGAAAACCGAAACCTCGTTCCAAATAGATCCCT
TAAAGACGCTATTAACAGACATCTTGGACAGTAATTCTATGGACACGAAC
ACAAAAATTAAGTACAATTGTACCGGCCCTATCGTACACAACTTGTACAC
AATGTATTAATGAGTCTTTTGGCAATCGATCAAGATTCCGTGGGACTTTT
GATATTTTGATCAAACTGATTTGATAAAACAAAACGTAATGAACTACCAT
TTAGCTATATCAACTTAAAAATTTATTAGATATAACACAGTTTAATTTCG
ATAATTTGAATAAAAAAACTCGCAAATAAATACACTTCCATGAAACGAAA
ATAAAATCCAACAATTGTTAATTTTTCTTAAAGAAAATAGTTTTTATGAA
CCAAAACAAAAGGCCATCATTGGTAAATTTCTTNTTGGAATAACTGCAAG
GGTGGTGGTGTTTGTAGAAAATGTCCAAAATTGCAGTTACTCCACATAGT
GTTAAGGAGTAACTGCAAGACCCCCCCCCCTGGTGGACTGGAAATGAGGG
GCTTCACTTTTTGCTGCCTGGGAAAGGTTCGAGATTCTACTTTAGCCCTT
CGGGCTTTAAACTCAATGCCTCCCTCCCTTACAGGGCGTTTCCCTTTGCA
TAGGTACCCTTTCCTTAGGACCTTTAATCATCCTAATCTATTAATTTTTC
TTTCTATCATTCTTTAGACGGTTACACATACGAACGAACATCAATCACTC
AATGGTTTGAAACTGGAAACAATAGAAGTCCAATGACAAATTTACCGTTG
GAAAACCGAAACCTCGTTCCAAATAGATCCCTTAAAGACGCTATTAACAG
ACATCTTGGACAGTAATTCTATGGACACGAACACAAAAATTAAGTACAAT
TGTACCGGCCCTATCGTACACAACTTGTACACAATGTATTAATGAGTCTT
TTGGCAATCGATCAAGATTCCGTGGGACTTTTGATATTTTGATCAAACTG
ATTTGATAAAACAAAACGTAATGAACTACCATTTAGCTATATCAACTTAA
AAATTTATTAGATATAACACAGTTTAATTTCGATAATTTGAATAAAAAAA
CTCGCAAATAAATACACTTCCATGAAACGAAAATAAAATCCAACAATTGT
TAATTTTTCTTAAAGAAAATAGTTTTTATGAACCAAAACAAAAGGCCATC
ATTGGTAAATTTCTTCATCTACGTATTTTTCATATCAACAGTTTCAACTC
CAAGCCGAGTCCAAAATATAGTATTGCGTTCGTAATATTTTAAGGTCTTG
ATATA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007053XLOC_007053Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00012573-exon-sc0000145-1575043694:482961..483132TCONS_00012573-exon-sc0000145-1575043694:482961..483132Clytia hemisphaericaexon
TCONS_00012573-exon-sc0000145-1575043694:481551..481973TCONS_00012573-exon-sc0000145-1575043694:481551..481973Clytia hemisphaericaexon
TCONS_00012573-exon-sc0000145-1575043694:480987..481211TCONS_00012573-exon-sc0000145-1575043694:480987..481211Clytia hemisphaericaexon
TCONS_00012573-exon-sc0000145-1575043694:479028..479615TCONS_00012573-exon-sc0000145-1575043694:479028..479615Clytia hemisphaericaexon
TCONS_00012573-exon-sc0000145-1510915933:482961..483132TCONS_00012573-exon-sc0000145-1510915933:482961..483132Clytia hemisphaericaexon
TCONS_00012573-exon-sc0000145-1510915933:481551..481973TCONS_00012573-exon-sc0000145-1510915933:481551..481973Clytia hemisphaericaexon
TCONS_00012573-exon-sc0000145-1510915933:480987..481211TCONS_00012573-exon-sc0000145-1510915933:480987..481211Clytia hemisphaericaexon
TCONS_00012573-exon-sc0000145-1510915933:479028..479615TCONS_00012573-exon-sc0000145-1510915933:479028..479615Clytia hemisphaericaexon
TCONS_00012573-exon-sc0000145-1491911889:482961..483132TCONS_00012573-exon-sc0000145-1491911889:482961..483132Clytia hemisphaericaexon
TCONS_00012573-exon-sc0000145-1491911889:481551..481973TCONS_00012573-exon-sc0000145-1491911889:481551..481973Clytia hemisphaericaexon
TCONS_00012573-exon-sc0000145-1491911889:480987..481211TCONS_00012573-exon-sc0000145-1491911889:480987..481211Clytia hemisphaericaexon
TCONS_00012573-exon-sc0000145-1491911889:479028..479615TCONS_00012573-exon-sc0000145-1491911889:479028..479615Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000145supercontigsc0000145:479028..483132 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.50584	0.319653	0.325079	0.204078	0.0690042	0.400857	5.51367	4.73284	6.09	6.05635	5.68632	5.82256	3.80416	4.59741	2.97059	3.39193	3.75501	5.30666	13.7936	7.94731	9.01243	7.58976	5.82711	5.08483	5.70887	5.21072	3.07909	6.5117	1.5837	1.5132
Blast
[Close]
BLAST of TCONS_00012573 vs. Swiss-Prot (Human)
Match: WSDU1 (WD repeat, SAM and U-box domain-containing protein 1 OS=Homo sapiens GN=WDSUB1 PE=1 SV=3)

HSP 1 Score: 114.775 bits (286), Expect = 1.258e-27
Identity = 67/168 (39.88%), Postives = 88/168 (52.38%), Query Frame = 1 
Query:  457 WTVEDVCDWLKDISLEEYCELFRFHAIDGVELLEQNEESLVDALKIERIGHRRKIMRNXXXXXXXXXXXXXXXXXXXXXPDEFLCPIXXXXXXXXXXXXXXPDEFLCPITQELMTDPVIVADGYTYERTSITQWFETGNNRSPMTNLPLENRNLVPNRSLKDAINRHL 960
            W+ EDV  WL    L++   +F+ + IDG ELL   +ESL D LKIE +G R K++R                             I   + + K      PDEF+CPIT+ELM DPVI +DGY+YE+ ++  W       SPMTNL L +  L PNR+LK AINR L
Sbjct:  332 WSEEDVSTWLCAQDLKDLVGIFKMNNIDGKELLNLTKESLADDLKIESLGLRSKVLRK----------------------------IEELRTKVKSLSSGIPDEFICPITRELMKDPVIASDGYSYEKEAMENWISKKKRTSPMTNLVLPSAVLTPNRTLKMAINRWL 471
The following BLAST results are available for this feature:
BLAST of TCONS_00012573 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
WSDU11.258e-2739.88WD repeat, SAM and U-box domain-containing protein... [more]
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