TCONS_00012568 (transcript) - C. hemisphaerica

Overview
NameTCONS_00012568
Unique NameTCONS_00012568
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length864

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00012568 ID=TCONS_00012568|Name=TCONS_00012568|organism=Clytia hemisphaerica|type=transcript|length=864bp
GTCGAAATTGATTATTGATATGTCTTTTCACTTGAGAAAACGTACGGGGT
CAATATTTAATGAGATGCACAGCTGTGTTTTAAGATTCTCACAACATTTA
TATAAAACAATATTGTACAAACTAACTCTTAAATATTTGTAGCAGATTTT
TAGGCTATAAAACTTTGTCTCTTTTTCTTGTATATCAGTCATCACAGATC
TCTGCTTGCACAACGTTTAGAAGCAGTATTGTATTGAATTGACAGCAAAG
AAGCAATGATGAAGTTGATTTTGGGGATCGTTTTTGCATTGATTGCATCA
ATCCAAGCTGATTTGAGTTGGAAAAACTgtGATAGTAAATCTTTCATTAA
GATTGATGATATTTCACCCAGAGGAGAAATCAACAAGGATACTCAACTTA
AAGCTAAAATTACTTCCACCTCGACGTACACTGATGCCAACATGAAAGCC
GTTGTAGAAGTTGTGGTGAAGAAGGACAGCTGGTTTGGTATGATTACTAT
TCCAAAATGGGTGATGGGAATTGTAGCACCAATTATCGCAGCACAAATAC
CTGGAGTCAAACACTTGAGCGGAAACAAATTCGAAGTGGGATGTGAAGCT
GCCAAGAACTTTTTACCAGAATGCCCACCAAAAGTTGGCACATATGATGT
AGGACCagttgacttgaaaaaaatattcgagCAAGTGAAAGCGAAAGGTG
GTATCGCCGTCACTTACATTGGATCCGGAACTTATGAGATCAAAGCTGAC
GTCACTATTTCACAGACGCAAGAAACTTTGGCTTGTTTGGAGCTCAAcaa
cttgaaaatcaaaatgtaaaattattttcataacaagaaaaaagaaagta
aaacacAAAAACCA
Run BLAST on NCBI

protein sequence of TCONS_00012568-protein

>TCONS_00012568-protein ID=TCONS_00012568-protein|Name=TCONS_00012568-protein|organism=Clytia hemisphaerica|type=polypeptide|length=187bp
MMKLILGIVFALIASIQADLSWKNCDSKSFIKIDDISPRGEINKDTQLKA
KITSTSTYTDANMKAVVEVVVKKDSWFGMITIPKWVMGIVAPIIAAQIPG
VKHLSGNKFEVGCEAAKNFLPECPPKVGTYDVGPVDLKKIFEQVKAKGGI
AVTYIGSGTYEIKADVTISQTQETLACLELNNLKIKM
Run BLAST on NCBI

transcript from alignment at sc0000145:359197..361835-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00012568 ID=TCONS_00012568|Name=TCONS_00012568|organism=Clytia hemisphaerica|type=transcript|length=2639bp|location=Sequence derived from alignment at sc0000145:359197..361835- (Clytia hemisphaerica)
GTCGAAATTGATTATTGATATGTCTTTTCACTTGAGAAAACGTACGGGGT
CAATATTTAATGAGATGCACAGCTGTGTTTTAAGATTCTCACAACATTTA
TATAAAACAATATTGTACAAACTAACTCTTAAATATTTGTAGCAGATTTT
TAGGCTATAAAACTTTGTCTCTTTTTCTTGTATATCAGTCATCACAGATC
TCTGCTTGCACAACGTTTAGAAGCAGTATTGTATTGAATTGACAGCAAAG
AAGCAATGATGAAGTTGATTTTGGGGATCGTTTTTGCATTGATTGCATCA
ATCCAAGCTGATTTGAGTTGGAAAAACTGTAAGTGTCGTCTTCCTTGAAA
TTTAACAGATCGTATTTTTCCAGCCAAGTATAGATAAAACCAATGCAACA
GATATAATTTTCTGAAGAAAAAAAACAGATTAAAAAATTAACTTTCCTGT
AAGATCGTATCCGTTTTTCAATCTTAAACAGATCATTAATATTTCTTTCT
TTGAAACTATTTGATTTTAATCATTTACTTACCAGCTAGAAAAACGCTTT
TAGTGCAGAACGTATTTAAATTTCAAGCTGGAAACATCCAGAGGTTTTTA
GTTTTAAAACAGCTACTGTAAGACAATTCATACCATAACATGATGACACT
TTGCTGATGGACAAAATTTGAAGAAGGTGCACATTGATTACATGACACGG
GGAATTTTGGAGCTAAACCACATCACCGATTTGTTTATCAGACTCCCCCT
CAGATTCTATGACTAATGAGTTAGTTAATAAAGTATCACTTGGTCCATCA
GACATCTTGCATTTTTTTTTTTAGTCTTTTTCGATTCAATCGTTTTTTGA
TAATTGTGGAAGTTGATGAAAATGGCCTTTTCTTTTTACCGAAAATCTAA
AAACCTTTCAATAATATATAGCTAATTTTGATCGTCTCATTCTGAATTTT
TTTAATGTTACAAAAAATGAATGGTAAAAATTTGGGCTGACGTAATAGAC
GTAATTACCCTCCAAAATAGGGTAATTATTGACTAAAACTATTTAATTGT
TTAGAGCAAAATAAGGGACTCTCTTTTGACATATTTTCAAAAATTAATAA
AGGGGGATCCTAATAAGGTCCGAGTGGTTTGAAAAAGAAATTAACAAATG
GGGGGGGGTTTATTAGGCACCTGTGGAGTAATGCCCTTCCCTGGATGTAT
TTCTCTTTTTTTCATTTTTACAGGTGATAGTAAATCTTTCATTAAGATTG
ATGATATTTCACCCAGAGGAGAAATCAACAAGGATACTCAACTTAAAGCT
AAAATTACTTCCACCTCGACGTACACTGATGCCAACATGAAAGCCGTTGT
AGAAGTTGTGGTGAAGAAGGACAGCTGGTTTGGTATGATTACTATTCCAA
AATGGGTGATGGGAATTGTAGCACCAATTATCGCAGCACAAATACCTGGA
GTCAAACACTTGAGCGGAAAGTAAGTCTTCACTTTTTTCAAGTCAATTCT
CAAGTCTAAAATCAAAAATTCAGTTGAATCGTTTTTTTTCATGGCAGAAG
TAATTTAAAGCACTTAAAAATCATTTCACTTTTTCTTCGGTTTCTTAAAC
ATTTGGTTTTTCCAAAAATCGTCCGTGCCCTTTCCCCCTGTTGAGGATAT
CAGCCATCCATCATTCACTTTATTAAAGTGACCATGATCATGTAGCGTCG
CTTCCTTTCTTTCAAACGCCCCTCCTAAATATCAAAACATTTAAAGGGAT
ATTCGGCTTCTCCCGGGCATAAAGTTTTTACATTAAAATGACTGTTACTG
TTTTCTAGCAAATTCGAAGTGGGATGTGAAGCTGCCAAGAACTTTTTACC
AGAATGCCCACCAAAAGTTGGCACATATGATGTAGGACCAGTTGACTTGA
AAAAAATATTCGAGCAAGTGAAAGCGAAAGGTGGTATCGCCGTCACTTAC
ATTGGATCCGTAAGTTTTGTATTACATTTCAAATTAGAAGGTGTACGTTT
TTTTGCAAAATTTTAAAGCCTTCGGATGTTCTTAACTTTTTGATATTCTT
AACATAATTTTATTTTCACCATTTTGTGAGTATTTCTTTCTTATAAAAAA
ACGTGTATTTTCATATACATGGGGATACGAGAAGTTTTTTTCGCGTTGGT
GCAATACAACATGCTCCATCTCACCAAAACAAGAAAAAAAGTGCGTGCCC
TAAGGTTCNGCAATACAACATGCTCCATCCGACCAAAACAAGAAAAAAAG
TGCGTGTCTTAAGGTGTTTTTTTTTTATTCATAAGCCAAAAAGTGTGGGA
AATATATACCCAAAAGACACGCTGATTTTGTCCCTGGGACAATGGAGCAA
AATTGATTCGAATCAATTTTGAGAGAGCGTTTCAGGTTGGTGGGATGGAG
CATGTTGCATTGCACCAACGCGAAAAAAACTTCTCGTATCCCCAAGCCTT
AAAGATATTACTTTTGATTACCAAACATCAAATATTTCTTCTTGATTTTA
GGGAACTTATGAGATCAAAGCTGACGTCACTATTTCACAGACGCAAGAAA
CTTTGGCTTGTTTGGAGCTCAACAACTTGAAAATCAAAATGTAAAATTAT
TTTCATAACAAGAAAAAAGAAAGTAAAACACAAAAACCA

Coding sequence (CDS) from alignment at sc0000145:359197..361835-

>TCONS_00012568 ID=TCONS_00012568|Name=TCONS_00012568|organism=Clytia hemisphaerica|type=CDS|length=2256bp|location=Sequence derived from alignment at sc0000145:359197..361835- (Clytia hemisphaerica)
GGAACTTATGAGATCAAAGCTGACGTCACTATTTCACAGACGCAAGAAAC
TTTGGCTTGTTTGGAGCTCAACAACTTGAAAATCAAAATGTAACAAATTC
GAAGTGGGATGTGAAGCTGCCAAGAACTTTTTACCAGAATGCCCACCAAA
AGTTGGCACATATGATGTAGGACCAGTTGACTTGAAAAAAATATTCGAGC
AAGTGAAAGCGAAAGGTGGTATCGCCGTCACTTACATTGGATCCGTGATA
GTAAATCTTTCATTAAGATTGATGATATTTCACCCAGAGGAGAAATCAAC
AAGGATACTCAACTTAAAGCTAAAATTACTTCCACCTCGACGTACACTGA
TGCCAACATGAAAGCCGTTGTAGAAGTTGTGGTGAAGAAGGACAGCTGGT
TTGGTATGATTACTATTCCAAAATGGGTGATGGGAATTGTAGCACCAATT
ATCGCAGCACAAATACCTGGAGTCAAACACTTGAGCGGAAAATGATGAAG
TTGATTTTGGGGATCGTTTTTGCATTGATTGCATCAATCCAAGCTGATTT
GAGTTGGAAAAACTGGAACTTATGAGATCAAAGCTGACGTCACTATTTCA
CAGACGCAAGAAACTTTGGCTTGTTTGGAGCTCAACAACTTGAAAATCAA
AATGTAACAAATTCGAAGTGGGATGTGAAGCTGCCAAGAACTTTTTACCA
GAATGCCCACCAAAAGTTGGCACATATGATGTAGGACCAGTTGACTTGAA
AAAAATATTCGAGCAAGTGAAAGCGAAAGGTGGTATCGCCGTCACTTACA
TTGGATCCGTGATAGTAAATCTTTCATTAAGATTGATGATATTTCACCCA
GAGGAGAAATCAACAAGGATACTCAACTTAAAGCTAAAATTACTTCCACC
TCGACGTACACTGATGCCAACATGAAAGCCGTTGTAGAAGTTGTGGTGAA
GAAGGACAGCTGGTTTGGTATGATTACTATTCCAAAATGGGTGATGGGAA
TTGTAGCACCAATTATCGCAGCACAAATACCTGGAGTCAAACACTTGAGC
GGAAAATGATGAAGTTGATTTTGGGGATCGTTTTTGCATTGATTGCATCA
ATCCAAGCTGATTTGAGTTGGAAAAACTGGAACTTATGAGATCAAAGCTG
ACGTCACTATTTCACAGACGCAAGAAACTTTGGCTTGTTTGGAGCTCAAC
AACTTGAAAATCAAAATGTAACAAATTCGAAGTGGGATGTGAAGCTGCCA
AGAACTTTTTACCAGAATGCCCACCAAAAGTTGGCACATATGATGTAGGA
CCAGTTGACTTGAAAAAAATATTCGAGCAAGTGAAAGCGAAAGGTGGTAT
CGCCGTCACTTACATTGGATCCGTGATAGTAAATCTTTCATTAAGATTGA
TGATATTTCACCCAGAGGAGAAATCAACAAGGATACTCAACTTAAAGCTA
AAATTACTTCCACCTCGACGTACACTGATGCCAACATGAAAGCCGTTGTA
GAAGTTGTGGTGAAGAAGGACAGCTGGTTTGGTATGATTACTATTCCAAA
ATGGGTGATGGGAATTGTAGCACCAATTATCGCAGCACAAATACCTGGAG
TCAAACACTTGAGCGGAAAATGATGAAGTTGATTTTGGGGATCGTTTTTG
CATTGATTGCATCAATCCAAGCTGATTTGAGTTGGAAAAACTGGAACTTA
TGAGATCAAAGCTGACGTCACTATTTCACAGACGCAAGAAACTTTGGCTT
GTTTGGAGCTCAACAACTTGAAAATCAAAATGTAACAAATTCGAAGTGGG
ATGTGAAGCTGCCAAGAACTTTTTACCAGAATGCCCACCAAAAGTTGGCA
CATATGATGTAGGACCAGTTGACTTGAAAAAAATATTCGAGCAAGTGAAA
GCGAAAGGTGGTATCGCCGTCACTTACATTGGATCCGTGATAGTAAATCT
TTCATTAAGATTGATGATATTTCACCCAGAGGAGAAATCAACAAGGATAC
TCAACTTAAAGCTAAAATTACTTCCACCTCGACGTACACTGATGCCAACA
TGAAAGCCGTTGTAGAAGTTGTGGTGAAGAAGGACAGCTGGTTTGGTATG
ATTACTATTCCAAAATGGGTGATGGGAATTGTAGCACCAATTATCGCAGC
ACAAATACCTGGAGTCAAACACTTGAGCGGAAAATGATGAAGTTGATTTT
GGGGATCGTTTTTGCATTGATTGCATCAATCCAAGCTGATTTGAGTTGGA
AAAACT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007049XLOC_007049Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00012568-exon-sc0000145-1575043694:361508..361835TCONS_00012568-exon-sc0000145-1575043694:361508..361835Clytia hemisphaericaexon
TCONS_00012568-exon-sc0000145-1575043694:360366..360612TCONS_00012568-exon-sc0000145-1575043694:360366..360612Clytia hemisphaericaexon
TCONS_00012568-exon-sc0000145-1575043694:359877..360027TCONS_00012568-exon-sc0000145-1575043694:359877..360027Clytia hemisphaericaexon
TCONS_00012568-exon-sc0000145-1575043694:359197..359334TCONS_00012568-exon-sc0000145-1575043694:359197..359334Clytia hemisphaericaexon
TCONS_00012568-exon-sc0000145-1510915933:361508..361835TCONS_00012568-exon-sc0000145-1510915933:361508..361835Clytia hemisphaericaexon
TCONS_00012568-exon-sc0000145-1510915933:360366..360612TCONS_00012568-exon-sc0000145-1510915933:360366..360612Clytia hemisphaericaexon
TCONS_00012568-exon-sc0000145-1510915933:359877..360027TCONS_00012568-exon-sc0000145-1510915933:359877..360027Clytia hemisphaericaexon
TCONS_00012568-exon-sc0000145-1510915933:359197..359334TCONS_00012568-exon-sc0000145-1510915933:359197..359334Clytia hemisphaericaexon
TCONS_00012568-exon-sc0000145-1491911889:361508..361835TCONS_00012568-exon-sc0000145-1491911889:361508..361835Clytia hemisphaericaexon
TCONS_00012568-exon-sc0000145-1491911889:360366..360612TCONS_00012568-exon-sc0000145-1491911889:360366..360612Clytia hemisphaericaexon
TCONS_00012568-exon-sc0000145-1491911889:359877..360027TCONS_00012568-exon-sc0000145-1491911889:359877..360027Clytia hemisphaericaexon
TCONS_00012568-exon-sc0000145-1491911889:359197..359334TCONS_00012568-exon-sc0000145-1491911889:359197..359334Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00012568-proteinTCONS_00012568-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000145supercontigsc0000145:359197..361835 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.13745	1.37329	0.55195	0.659997	8.327	6.46467	1.3231	2.73812	2.0996	4.52294	1.97553	2.92193	69.9208	58.1731	48.7181	156.747	34.1146	24.8807	139.281	185.453	261.794	233.42	149.174	141.041	196.153	234.697	10.4721	13.237	36.4918	46.3671
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00012568 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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