TCONS_00012549 (transcript) - C. hemisphaerica

Overview
NameTCONS_00012549
Unique NameTCONS_00012549
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1082

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00012549 ID=TCONS_00012549|Name=TCONS_00012549|organism=Clytia hemisphaerica|type=transcript|length=1082bp
attaATTCGCACAGTTCACGGAGAATGGGGACAATGGAGCAATTGGACAG
AATGTGATAAACCGTGCGGTGTTGGATTCCAAAACAGGTCACGTGTCTGT
GATGATCCTGCCCCCGCTAATGGTGGAAATGATTGCGTAGGTGAAGATCA
TGGCAGACAAATGTGCAATATCAACTACTGCCCAGaaatgtGTGATGTAC
ATTTTAAGATGTGCGGTTGTGAAGATGTTCCTGTCATTTATGATACCAGT
GTCCTCCAAACAAATGCCACATTTCATGGAATGAACGAATCTGCAGTTAA
TGCCTCCCTTCAAACTATTGCATTATGGAATAACGATCGTGTGAAGGTAC
TTTGTAGAAATGCACAATGTAGTGAGGCAGACTTACAAACAGCGATTGAC
CAGATCAAAGCAGAAACCGATGACCTTCAAACATCTTTACATTCAGTaga
taattctttaaaactCTTACGAAAGATGATTGACTGCAAAGCGAATGTTT
GGTTAAGAAAAGATGAGTTGTTTGACCATTACCAAATTCTTTGGAAAAGG
AAAGTTATCGTTCAACGAGTCCATGAGGATTTGACGATGAAGAAAACAGT
CTTGGTGAAAGAAATACAGAGGTGTATGGAAAGAAGCTGGTTACGAAAAA
CTTTGGAAAGCGGTTGGTCCAAGTATTTATAATGATATTTCAGTGTGGAA
TTGAATGGATAGGTGTGTATAAGTGGCAGTTATTACACTAGGCTCCGATA
GTGGCAGTATTCGAgtatttgttttgtatttttatcatttgatttttacC
ATGAGTTTTGctgtattatttttttccttggATTATTTTTGCTAGATTTT
TTTGGTTCAGCTGTCATACATTGTCTTTAGGAAAAGTGGAATTTGAACTT
CATCAACAAATCTGTATTGCTTTTTTCACTGTTATTTCTTACTTAGAAAC
CGTAATAATTTCGTAAACCCAGCTTAGGTAACCCCCAttgttgtctgtac
acaaacccagtatctacggcttatttcaaaattcattgccgtagagggtc
tgttgtcattgtcttttctcatttgagatttt
Run BLAST on NCBI

protein sequence of TCONS_00012549-protein

>TCONS_00012549-protein ID=TCONS_00012549-protein|Name=TCONS_00012549-protein|organism=Clytia hemisphaerica|type=polypeptide|length=226bp
LIRTVHGEWGQWSNWTECDKPCGVGFQNRSRVCDDPAPANGGNDCVGEDH
GRQMCNINYCPEMCDVHFKMCGCEDVPVIYDTSVLQTNATFHGMNESAVN
ASLQTIALWNNDRVKVLCRNAQCSEADLQTAIDQIKAETDDLQTSLHSVD
NSLKLLRKMIDCKANVWLRKDELFDHYQILWKRKVIVQRVHEDLTMKKTV
LVKEIQRCMERSWLRKTLESGWSKYL
Run BLAST on NCBI

transcript from alignment at sc0000145:163294..166105-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00012549 ID=TCONS_00012549|Name=TCONS_00012549|organism=Clytia hemisphaerica|type=transcript|length=2812bp|location=Sequence derived from alignment at sc0000145:163294..166105- (Clytia hemisphaerica)
ATTAATTCGCACAGTTCACGGAGAATGGGGACAATGGAGCAATTGGACAG
AATGTGATAAACCGTGCGGTGTTGGATTCCAAAACAGGTCACGTGTCTGT
GATGATCCTGCCCCCGCTAATGGTGGAAATGATTGCGTAGGTGAAGATCA
TGGCAGACAAATGTGCAATATCAACTACTGCCCAGGTACTGTTTTAATGA
TATGGTCTTTTCAGGCTTGAAAATACTTGATGTCTTTGAAATCTCAACCA
TTAAGAATAAACGTAGAATCTAACCATTTGCCGGTCACCGGATAATAACC
GCGGGAAAATAAAGATACGCAGAGTTTAGAGCCGAAAATAGAAGTGGTTT
GAGAGAGAAAAAGCTGCGATAGAGTTTCTAAGAAACGACATAATCCTCTG
GCTGTAAAGCGTCCCAAAAGCAAACCATTTGACATGAACATCATTTTTTA
ATAAGCGATAAAGTTTAAATTTTCAATATAATTTCAATACAGGGGGTGAG
GGTGGACGAACCTTTTCAATTTGAAAAAAGAAATGTGCGAGAAATCTTAG
AAATGTGCAAATACCCCCTGGAAAACAGAAAAAATTGCAAAAGAGCCTTG
GAAAAATTCTTTTCATACTTTAAAGTGAGGGTTGTCAAACTAAATTCAGT
GTGTTTCCCCTGGATATTTCAAAATAACTTTTTACCCCCTGAAAAAATGA
AAAAATATTCCTTTAGAACCTTCTGGAAATTCCTCTCAGATTACCGTCTT
GAATGGTTATTTGACTCCATGTATGGATATAAAATGGAATGGCTCAATTT
ACCTTAGCTGAAAATCGTCCATTTCCGTCCATAAAGTATATCATAAATTT
CTTCACGAATATCACTTGCCTCGCTTTGAAATTATTGTCATGGTGACTAA
CTCCCTACTTTCTATTTATAAAAAAAATAATTTAATGTCTCAAGGGACAT
AATTGTTTGAATACGAGGCAAGTGATGTTCGTGACGTAATTTATGAAAAG
GTCACAACCTCACTTTCATACAAAAATTATTTTTTCTCAGAAATGTGTGA
TGTACATTTTAAGATGTGCGGTTGTGAAGATGTTCCTGTCATTTATGATA
CCAGTGTCCTCCAAACAAATGCCACATTTCATGGAATGAACGAATCTGCA
GTTAATGCCTCCCTTCAAACTATTGCATTATGGAATAACGATCGTGTGAA
GGTACTTTGTAGAAGTAAGTATTTGCAAAATATACCTTATCAGTCCCTTT
TGAGTCAGTTTGCTTACTCATCAATTTTAATTTACAAGCTTTTTGATATT
GAATTAACACGGGCGTGGAGCAAGATTGGTCAGAAAGAGGAAAAGAAAAA
CATTTTACTTATATCAGCATAATATGACAATAGGTAGACACTGTCCTGAT
ATGAAATATGTGTCTGATATGAAACGGAAACACTTATGTAAAAACAAAAC
CTTTAAAACTTTCAGATGCACAATGTAGTGAGGCAGACTTACAAACAGCG
ATTGACCAGATCAAAGCAGAAACCGATGACCTTCAAACATCTTTACATTC
AGTAGATAATTCTTTAAAACTCTTACGAAAGATGATTGACTGCAAAGCGA
ATGTTTGGTTAAGAAAAGATGAGTTGTTTGACCATTACCAAATTCTTTGG
AAAAGGAAAGTTATCGTTCAACGAGTCCATGAGGATTTGACGATGAAGAA
AACAGTCTTGGTGAAAGAAATACAGAGGTGTATGGAAAGAAGTAAGTTGT
TCATTCCTTCTGTTAATACACCTCCTTCTTACATACCCATTGGGAACCCC
ACTGGAAAAATGTCTAAAATATCGTCCCCAGTGTAAAATTATACTAATTT
TTTTTCCCCACTGAAATCAAATCAAAATAAGAAGCAAATCCTCACTGCAA
AATGTTATGCTGTTTTTCCTATCCCCACTGAATTTTTTGACTTGAAAACA
AAAGAATTGAAATTCCCAGCAATAAAAAATATATATCCCCATCGAGTTTC
AGTCCGTCATTTTTATCCTCACTGCCTGAAAAAATCTTACCAGGTCTATG
ATGAAGGCGGTCTGGTAAAATTGCCCGAAAATATGAAAAGAGATTCTTGT
TGCGAGTCTTAAAAATTTGAATTCCGTTTAATTAGATAAAGAACCTCTTA
GAATACTCATAGGCTGTGTACCCTTAGCTTTGGAGCTTTGATTAAAAACT
GCTTGGATGGGAGGCCTAATCTTTAAAATCCTATATTGCGATATTATATT
GTTTTGCTGGTATTGTTTTCTAGAATAATTATCATCCAGGTGGCCTTAAT
GCCTCTAATACAGTAATCAGCTTCAATTTACTTCCTTCTCGAAAACGCGA
ATTGTTGTTTTTTAGGCTGGTTACGAAAAACTTTGGAAAGCGGTTGGTCC
AAGTATTTATAATGATATTTCAGTGTGGAATTGAATGGATAGGTGTGTAT
AAGTGGCAGTTATTACACTAGGCTCCGATAGTGGCAGTATTCGAGTATTT
GTTTTGTATTTTTATCATTTGATTTTTACCATGAGTTTTGCTGTATTATT
TTTTTCCTTGGATTATTTTTGCTAGATTTTTTTGGTTCAGCTGTCATACA
TTGTCTTTAGGAAAAGTGGAATTTGAACTTCATCAACAAATCTGTATTGC
TTTTTTCACTGTTATTTCTTACTTAGAAACCGTAATAATTTCGTAAACCC
AGCTTAGGTAACCCCCATTGTTGTCTGTACACAAACCCAGTATCTACGGC
TTATTTCAAAATTCATTGCCGTAGAGGGTCTGTTGTCATTGTCTTTTCTC
ATTTGAGATTTT

Coding sequence (CDS) from alignment at sc0000145:163294..166105-

>TCONS_00012549 ID=TCONS_00012549|Name=TCONS_00012549|organism=Clytia hemisphaerica|type=CDS|length=2724bp|location=Sequence derived from alignment at sc0000145:163294..166105- (Clytia hemisphaerica)
GCTGGTTACGAAAAACTTTGGAAAGCGGTTGGTCCAAGTATTTATAAATG
CACAATGTAGTGAGGCAGACTTACAAACAGCGATTGACCAGATCAAAGCA
GAAACCGATGACCTTCAAACATCTTTACATTCAGTAGATAATTCTTTAAA
ACTCTTACGAAAGATGATTGACTGCAAAGCGAATGTTTGGTTAAGAAAAG
ATGAGTTGTTTGACCATTACCAAATTCTTTGGAAAAGGAAAGTTATCGTT
CAACGAGTCCATGAGGATTTGACGATGAAGAAAACAGTCTTGGTGAAAGA
AATACAGAGGTGTATGGAAAGAAAAATGTGTGATGTACATTTTAAGATGT
GCGGTTGTGAAGATGTTCCTGTCATTTATGATACCAGTGTCCTCCAAACA
AATGCCACATTTCATGGAATGAACGAATCTGCAGTTAATGCCTCCCTTCA
AACTATTGCATTATGGAATAACGATCGTGTGAAGGTACTTTGTAGAATTA
ATTCGCACAGTTCACGGAGAATGGGGACAATGGAGCAATTGGACAGAATG
TGATAAACCGTGCGGTGTTGGATTCCAAAACAGGTCACGTGTCTGTGATG
ATCCTGCCCCCGCTAATGGTGGAAATGATTGCGTAGGTGAAGATCATGGC
AGACAAATGTGCAATATCAACTACTGCCCAGGCTGGTTACGAAAAACTTT
GGAAAGCGGTTGGTCCAAGTATTTATAAATGCACAATGTAGTGAGGCAGA
CTTACAAACAGCGATTGACCAGATCAAAGCAGAAACCGATGACCTTCAAA
CATCTTTACATTCAGTAGATAATTCTTTAAAACTCTTACGAAAGATGATT
GACTGCAAAGCGAATGTTTGGTTAAGAAAAGATGAGTTGTTTGACCATTA
CCAAATTCTTTGGAAAAGGAAAGTTATCGTTCAACGAGTCCATGAGGATT
TGACGATGAAGAAAACAGTCTTGGTGAAAGAAATACAGAGGTGTATGGAA
AGAAAAATGTGTGATGTACATTTTAAGATGTGCGGTTGTGAAGATGTTCC
TGTCATTTATGATACCAGTGTCCTCCAAACAAATGCCACATTTCATGGAA
TGAACGAATCTGCAGTTAATGCCTCCCTTCAAACTATTGCATTATGGAAT
AACGATCGTGTGAAGGTACTTTGTAGAATTAATTCGCACAGTTCACGGAG
AATGGGGACAATGGAGCAATTGGACAGAATGTGATAAACCGTGCGGTGTT
GGATTCCAAAACAGGTCACGTGTCTGTGATGATCCTGCCCCCGCTAATGG
TGGAAATGATTGCGTAGGTGAAGATCATGGCAGACAAATGTGCAATATCA
ACTACTGCCCAGGCTGGTTACGAAAAACTTTGGAAAGCGGTTGGTCCAAG
TATTTATAAATGCACAATGTAGTGAGGCAGACTTACAAACAGCGATTGAC
CAGATCAAAGCAGAAACCGATGACCTTCAAACATCTTTACATTCAGTAGA
TAATTCTTTAAAACTCTTACGAAAGATGATTGACTGCAAAGCGAATGTTT
GGTTAAGAAAAGATGAGTTGTTTGACCATTACCAAATTCTTTGGAAAAGG
AAAGTTATCGTTCAACGAGTCCATGAGGATTTGACGATGAAGAAAACAGT
CTTGGTGAAAGAAATACAGAGGTGTATGGAAAGAAAAATGTGTGATGTAC
ATTTTAAGATGTGCGGTTGTGAAGATGTTCCTGTCATTTATGATACCAGT
GTCCTCCAAACAAATGCCACATTTCATGGAATGAACGAATCTGCAGTTAA
TGCCTCCCTTCAAACTATTGCATTATGGAATAACGATCGTGTGAAGGTAC
TTTGTAGAATTAATTCGCACAGTTCACGGAGAATGGGGACAATGGAGCAA
TTGGACAGAATGTGATAAACCGTGCGGTGTTGGATTCCAAAACAGGTCAC
GTGTCTGTGATGATCCTGCCCCCGCTAATGGTGGAAATGATTGCGTAGGT
GAAGATCATGGCAGACAAATGTGCAATATCAACTACTGCCCAGGCTGGTT
ACGAAAAACTTTGGAAAGCGGTTGGTCCAAGTATTTATAAATGCACAATG
TAGTGAGGCAGACTTACAAACAGCGATTGACCAGATCAAAGCAGAAACCG
ATGACCTTCAAACATCTTTACATTCAGTAGATAATTCTTTAAAACTCTTA
CGAAAGATGATTGACTGCAAAGCGAATGTTTGGTTAAGAAAAGATGAGTT
GTTTGACCATTACCAAATTCTTTGGAAAAGGAAAGTTATCGTTCAACGAG
TCCATGAGGATTTGACGATGAAGAAAACAGTCTTGGTGAAAGAAATACAG
AGGTGTATGGAAAGAAAAATGTGTGATGTACATTTTAAGATGTGCGGTTG
TGAAGATGTTCCTGTCATTTATGATACCAGTGTCCTCCAAACAAATGCCA
CATTTCATGGAATGAACGAATCTGCAGTTAATGCCTCCCTTCAAACTATT
GCATTATGGAATAACGATCGTGTGAAGGTACTTTGTAGAATTAATTCGCA
CAGTTCACGGAGAATGGGGACAATGGAGCAATTGGACAGAATGTGATAAA
CCGTGCGGTGTTGGATTCCAAAACAGGTCACGTGTCTGTGATGATCCTGC
CCCCGCTAATGGTGGAAATGATTGCGTAGGTGAAGATCATGGCAGACAAA
TGTGCAATATCAACTACTGCCCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007041XLOC_007041Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00012549-exon-sc0000145-1575043694:165921..166105TCONS_00012549-exon-sc0000145-1575043694:165921..166105Clytia hemisphaericaexon
TCONS_00012549-exon-sc0000145-1575043694:164892..165065TCONS_00012549-exon-sc0000145-1575043694:164892..165065Clytia hemisphaericaexon
TCONS_00012549-exon-sc0000145-1575043694:164365..164640TCONS_00012549-exon-sc0000145-1575043694:164365..164640Clytia hemisphaericaexon
TCONS_00012549-exon-sc0000145-1575043694:163294..163740TCONS_00012549-exon-sc0000145-1575043694:163294..163740Clytia hemisphaericaexon
TCONS_00012549-exon-sc0000145-1510915933:165921..166105TCONS_00012549-exon-sc0000145-1510915933:165921..166105Clytia hemisphaericaexon
TCONS_00012549-exon-sc0000145-1510915933:164892..165065TCONS_00012549-exon-sc0000145-1510915933:164892..165065Clytia hemisphaericaexon
TCONS_00012549-exon-sc0000145-1510915933:164365..164640TCONS_00012549-exon-sc0000145-1510915933:164365..164640Clytia hemisphaericaexon
TCONS_00012549-exon-sc0000145-1510915933:163294..163740TCONS_00012549-exon-sc0000145-1510915933:163294..163740Clytia hemisphaericaexon
TCONS_00012549-exon-sc0000145-1491911889:165921..166105TCONS_00012549-exon-sc0000145-1491911889:165921..166105Clytia hemisphaericaexon
TCONS_00012549-exon-sc0000145-1491911889:164892..165065TCONS_00012549-exon-sc0000145-1491911889:164892..165065Clytia hemisphaericaexon
TCONS_00012549-exon-sc0000145-1491911889:164365..164640TCONS_00012549-exon-sc0000145-1491911889:164365..164640Clytia hemisphaericaexon
TCONS_00012549-exon-sc0000145-1491911889:163294..163740TCONS_00012549-exon-sc0000145-1491911889:163294..163740Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00012549-proteinTCONS_00012549-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000145supercontigsc0000145:163294..166105 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.07498	3.43936	5.07322	4.20231	0.753496	0.554077	1.94729	1.45409	1.94218	1.683	4.50938	1.06547	2.16523	2.0568	1.46237	1.75347	0.945731	2.20222	1.64164	13.1062	1.31691	1.21777	1.38146	1.35958	7.82193	5.03049	1.22504	1.82542	1.11446	0.957846
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000884TSP1_rpt
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00012549 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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