|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00012543 ID=TCONS_00012543|Name=TCONS_00012543|organism=Clytia hemisphaerica|type=transcript|length=3052bp
gAAAAAAATTGGTGATGTGTGATTTGGGATTTTTTGAAGAGCAAATTAAG
GCAAATTTAGGTGATTAACGTGATGAGGCCCTCATGAGGGTAAATAGTTT
GGCGGTATATTGATTAAAATGATGAATATATTCACAAATACAAAAAGGTT
ATAAAATTCCACtcaaaaaggttacaaaattttttacaaaaagctTAATA
TATAGTATATGACTCTTTAAGAGAAGTAGTTTTGATTCAGAAAATATACA
GCTCTGGAATAATGGTTATATATCAAATTAAGTTACAGGATAAATAAAGG
ATCGTAAAGCGTTTCTTACAAATCGTTTCTTTCCAAAAGCTGACAAATTC
CACAAAATCCTAAACAGAAACACCCTGAAAGTCAGCTACAGTTGCTCACC
CAACATATCGTCTATCATCTCTTCTCACAATAAAAAGGTTTTAGGAGATC
CTGcaccaatcaaaacaaaaacttgtAATTGTCGAATAAAAATTGATTGC
CCACTCAACGGAAAATGCCTCCAAAAAAGCGTTATTTACAAATTCCACGT
AAAAGCAAACCCAGAAGACGACGGTGTTCATTATATTGGTCTCACTGAGA
GCACTTTCAAAAATCGCTGGTACAACTATCGCCATGATTTTAGAAATGAG
TCCAAAGAAAAATCTACTGAACTATCTAAACACGTTTGGAGTTTGAAAAA
AGCCGGTTCAACACCAACATTATCTTGGGATTATTGACCACGCCCCAGCG
TACCGGAATGGCagcaaaaattataatttatgCTTGACTAAAAAGTATCA
TATAATAACTTCAAACTTAAAGTTGCTTAACAAAAGAACTgaatacacaa
cacgtcttttgcatctttctcacagcttgaaacgtcattacgacttataa
ttagcaattaagtgaaagaatctgactctcacaggaaagtcttttgggaa
ttgaatgagtgattttcgataagaaatgcaataaaactgcttcgaaaaat
catttaatgagggtaggagagtgaacaataatattattactgcggacata
gctagtacacgagaaatcggcaaaaatctgttacttgtatatccagtgta
taataaatccttgttCTAACTAAAGGATATAAATTTTGGCtaaatataaa
agttatttgACAATACAGAAAGGACTTTAAACAGCTATGGATAAGATACA
ATATTCCAGTTACAAAGGACacaaaaaggttacaaaaattggctttaacc
aaatcaaataaagtGGCTTTGGTACAGATGATATGGTGTGTGGGTTATAT
ATCAAATTTATTACAGGATAACAAAAAAGGATATTATTTCTGGGTGAATA
TAAATTTTTAGTACGATCTTTGATATCTACACCCCTGTTTCGCAGACTCG
GTGGGACCCCCACCCACtagaaaatttgaccaaaatgttTCCTCCGttgg
gaaaaataaaaattacgaCCCAagtggaaaattgactttgatttcatttg
tATTCAACGTAAGAAAATTTCACTCCGAAACCTAAGGGAGAAGAAAGAAT
ATCCCAATTATGATTCATTCCATCAATAAGTCTTGTTTTTGGGTATCCGT
GTACTTGGGTAAGAAAATTCACTAAtacaaaatatatcaaaaaaatgatt
tcacgcaaaaaggttacaaaattTAAGACATATGGCGCTTGAATGAATAC
TTTTATattactagccataactttcattaaggtgccaccgcagcaaaacg
aacacatagagttgaatttgcgttcaaaaggaatgatcttagccctacag
taatttttgttaagagtgacctctcatctgagacaaaattctttcaaatg
ctaacaaatgtgtcaagagagtgatttacagtctacttagagtgacatcc
gtgccttgtcttacacgttttttaagaacaatttcataagaatacaaGGC
TGATATTTGGCGAAAACCTAAGAACAATAATTtagaagaatctgaacctc
agatttcagaaattactgagaagtacatgtttctATTTTAATTAAcattg
acatttaaggctgaaaaactgatataaatttaagagcaggctagccagaa
tcatatgacttactggtttttcctataaaaagcgtatatatctgaagata
ctgctcttcatatgttatttactaatgtacacgtttagcaacataactgt
tcgaatacattgagtagagtaatatttttaacctgtgaagagcgcttaat
aactacttgtggtataaaaagggaatttcccagaaaagggaatttcctta
gattcatttaactctccagggataacaaaaagacaaactgacatttcaaa
atgagtaatcagatcaagaATAAGTAAAATAGAATAAGTAATTATCCCTT
GATCATTCCAAGTCTGTCGGTGGACTGATACCTGTTAAATTGCTAAAACT
TGGAGTTGAACGTTGTTCTCCAATTCTAACCACTCTTTTTAATTCAGCAA
TTAATACTGGGGTCTTTCCCCATGAACTTAAGCTTGCAGATATAATTCCA
TGTCATAAAAAAGATAGCGCTTTGGAAAAGTCAAACTATAGACCCATAAG
CTTGTTACCTACAATATCTAAAGTCTTTGAAAGACTCATGGTAAATCAAA
AGCTGCCTTTCTTAGACACTTTCCTCTCGAAATTTCTTTGTGGATTCAGA
AAGGGGCAAAGCACACAACACGCCCTAATAAACTTACTTCGAAGGTGGCA
AAATCATCTAAGCTCAGGAGATAAAGTAGGTGCCTTGCTTATGGATTTAT
CTAAGGCATTTGATGTTCTTCCACATAATTTTCTGTTGGCTAAGCTTCAG
GCTTACGGTTTCGAGTCTCCATCTTTAAATCTAATTCaaagttatctttt
caatcgAAATCATCGAGTCCGCATATCTTCAATATTTAGTAAGTGGCTAA
CTGCTAAATCTGGGGTTCCTCAAGGCTCAGTATTAGGATCTAttttattt
aatgttttcattaaTGATATGTTTATCATATTTAATGAAGATGACATCTG
TA Run BLAST on NCBI transcript from alignment at sc0000145:516947..519998+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00012543 ID=TCONS_00012543|Name=TCONS_00012543|organism=Clytia hemisphaerica|type=transcript|length=3052bp|location=Sequence derived from alignment at sc0000145:516947..519998+ (Clytia hemisphaerica)
gAAAAAAATTGGTGATGTGTGATTTGGGATTTTTTGAAGAGCAAATTAAG
GCAAATTTAGGTGATTAACGTGATGAGGCCCTCATGAGGGTAAATAGTTT
GGCGGTATATTGATTAAAATGATGAATATATTCACAAATACAAAAAGGTT
ATAAAATTCCACtcaaaaaggttacaaaattttttacaaaaagctTAATA
TATAGTATATGACTCTTTAAGAGAAGTAGTTTTGATTCAGAAAATATACA
GCTCTGGAATAATGGTTATATATCAAATTAAGTTACAGGATAAATAAAGG
ATCGTAAAGCGTTTCTTACAAATCGTTTCTTTCCAAAAGCTGACAAATTC
CACAAAATCCTAAACAGAAACACCCTGAAAGTCAGCTACAGTTGCTCACC
CAACATATCGTCTATCATCTCTTCTCACAATAAAAAGGTTTTAGGAGATC
CTGcaccaatcaaaacaaaaacttgtAATTGTCGAATAAAAATTGATTGC
CCACTCAACGGAAAATGCCTCCAAAAAAGCGTTATTTACAAATTCCACGT
AAAAGCAAACCCAGAAGACGACGGTGTTCATTATATTGGTCTCACTGAGA
GCACTTTCAAAAATCGCTGGTACAACTATCGCCATGATTTTAGAAATGAG
TCCAAAGAAAAATCTACTGAACTATCTAAACACGTTTGGAGTTTGAAAAA
AGCCGGTTCAACACCAACATTATCTTGGGATTATTGACCACGCCCCAGCG
TACCGGAATGGCagcaaaaattataatttatgCTTGACTAAAAAGTATCA
TATAATAACTTCAAACTTAAAGTTGCTTAACAAAAGAACTgaatacacaa
cacgtcttttgcatctttctcacagcttgaaacgtcattacgacttataa
ttagcaattaagtgaaagaatctgactctcacaggaaagtcttttgggaa
ttgaatgagtgattttcgataagaaatgcaataaaactgcttcgaaaaat
catttaatgagggtaggagagtgaacaataatattattactgcggacata
gctagtacacgagaaatcggcaaaaatctgttacttgtatatccagtgta
taataaatccttgttCTAACTAAAGGATATAAATTTTGGCtaaatataaa
agttatttgACAATACAGAAAGGACTTTAAACAGCTATGGATAAGATACA
ATATTCCAGTTACAAAGGACacaaaaaggttacaaaaattggctttaacc
aaatcaaataaagtGGCTTTGGTACAGATGATATGGTGTGTGGGTTATAT
ATCAAATTTATTACAGGATAACAAAAAAGGATATTATTTCTGGGTGAATA
TAAATTTTTAGTACGATCTTTGATATCTACACCCCTGTTTCGCAGACTCG
GTGGGACCCCCACCCACtagaaaatttgaccaaaatgttTCCTCCGttgg
gaaaaataaaaattacgaCCCAagtggaaaattgactttgatttcatttg
tATTCAACGTAAGAAAATTTCACTCCGAAACCTAAGGGAGAAGAAAGAAT
ATCCCAATTATGATTCATTCCATCAATAAGTCTTGTTTTTGGGTATCCGT
GTACTTGGGTAAGAAAATTCACTAAtacaaaatatatcaaaaaaatgatt
tcacgcaaaaaggttacaaaattTAAGACATATGGCGCTTGAATGAATAC
TTTTATattactagccataactttcattaaggtgccaccgcagcaaaacg
aacacatagagttgaatttgcgttcaaaaggaatgatcttagccctacag
taatttttgttaagagtgacctctcatctgagacaaaattctttcaaatg
ctaacaaatgtgtcaagagagtgatttacagtctacttagagtgacatcc
gtgccttgtcttacacgttttttaagaacaatttcataagaatacaaGGC
TGATATTTGGCGAAAACCTAAGAACAATAATTtagaagaatctgaacctc
agatttcagaaattactgagaagtacatgtttctATTTTAATTAAcattg
acatttaaggctgaaaaactgatataaatttaagagcaggctagccagaa
tcatatgacttactggtttttcctataaaaagcgtatatatctgaagata
ctgctcttcatatgttatttactaatgtacacgtttagcaacataactgt
tcgaatacattgagtagagtaatatttttaacctgtgaagagcgcttaat
aactacttgtggtataaaaagggaatttcccagaaaagggaatttcctta
gattcatttaactctccagggataacaaaaagacaaactgacatttcaaa
atgagtaatcagatcaagaATAAGTAAAATAGAATAAGTAATTATCCCTT
GATCATTCCAAGTCTGTCGGTGGACTGATACCTGTTAAATTGCTAAAACT
TGGAGTTGAACGTTGTTCTCCAATTCTAACCACTCTTTTTAATTCAGCAA
TTAATACTGGGGTCTTTCCCCATGAACTTAAGCTTGCAGATATAATTCCA
TGTCATAAAAAAGATAGCGCTTTGGAAAAGTCAAACTATAGACCCATAAG
CTTGTTACCTACAATATCTAAAGTCTTTGAAAGACTCATGGTAAATCAAA
AGCTGCCTTTCTTAGACACTTTCCTCTCGAAATTTCTTTGTGGATTCAGA
AAGGGGCAAAGCACACAACACGCCCTAATAAACTTACTTCGAAGGTGGCA
AAATCATCTAAGCTCAGGAGATAAAGTAGGTGCCTTGCTTATGGATTTAT
CTAAGGCATTTGATGTTCTTCCACATAATTTTCTGTTGGCTAAGCTTCAG
GCTTACGGTTTCGAGTCTCCATCTTTAAATCTAATTCaaagttatctttt
caatcgAAATCATCGAGTCCGCATATCTTCAATATTTAGTAAGTGGCTAA
CTGCTAAATCTGGGGTTCCTCAAGGCTCAGTATTAGGATCTAttttattt
aatgttttcattaaTGATATGTTTATCATATTTAATGAAGATGACATCTG
TA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00012543-exon-sc0000145-1491911889:516947..519998 | TCONS_00012543-exon-sc0000145-1491911889:516947..519998 | Clytia hemisphaerica | exon |
| TCONS_00012543-exon-sc0000145-1510915933:516947..519998 | TCONS_00012543-exon-sc0000145-1510915933:516947..519998 | Clytia hemisphaerica | exon |
| TCONS_00012543-exon-sc0000145-1575043694:516947..519998 | TCONS_00012543-exon-sc0000145-1575043694:516947..519998 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000145 | supercontig | sc0000145:516947..519998 + |
Blast
The following BLAST results are available for this feature:
|
