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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00012542 ID=TCONS_00012542|Name=TCONS_00012542|organism=Clytia hemisphaerica|type=transcript|length=1681bp
TTGCACCAATTCTTTTTACCCTTGTTGAGTCATCAAAGTTGAAAACATAA
AGCAATTCGGTTTATTCAGATAGGAATTATTTTTGTTGTAAAACAACTGC
AACATCGAGACATACCTCTGCGGAGACTCAGACTGCAAAGATTGGATTAA
ATAAAGAAAGTATTGCAATTCAAGGGggatgaataattttttttgatata
aTGTTCAAGTTATCTGTGGTTTTTTGCTTTATACAATTAATCTCCTGGAG
AGACGAGCTGTCAATTGGTTTATCGAAACATGTTGAGTTTGTGGGTTTTT
CTTGCATATTCTGTTATCAATGGTCGGTCAATGGCTCAAAATCTACAGCT
TCCCGCGTGATTTTAATAGACTTCCTCGTCGAATTTTCTTCAAACTTCAT
AGAAATAACCCTAGAACCCCTAGAATCTTCATAGTACTCCTAGAACATAC
ACATATATCATTTTCAGAAATCTAAAGAGTTTTTAATAATTCTACTAAAT
CATTTGCAAAATGTGAAGAGTCAATGCCTTTATAGGAGGGGAATTGGTTG
ATATCAATCAAGGCATAATTCCCAGTATGCTCTTCcaccaaaatatcaaa
accaTACAAATTCAATCCTGAATATTTCTTGATTCTTAAAACAATCTCTC
CAATGGTTTCCTTATCTAAGAGAAAACTCTTTTGGTCTGAAGACAACCAT
GTTTGGTGGTTCGGATCTTCGCTGTGTAAAACTTTATTAAAACATTGACC
CAATTTAGAGATATTAAAAGAATCGAATTCAATATTGATTTCAGGTTGCT
TACAATTGATTTCCAATTCCAAGGAATCTTCAACAACCAGATTCTTCACA
GATGGTCTTTCACATATATGGTACttgagGTTTTAGGAGATCCTGcacca
atcaaaacaaaaacttgtAATTGTCGAATAAAAATTGATTGCCCACTCAA
CGGAAAATGCCTCCAAAAAAGCGTTATTTACAAATTCCACGTAAAAGCAA
ACCCAGAAGACGACGGTGTTCATTATATTGGTCTCACTGAGAGCACTTTC
AAAAATCGCTGGTACAACTATCGCCATGATTTTAGAAATGAGTCCAAAGA
AAAATCTACTGAACTATCTAAACACGTTTGGAGTTTGAAAAAAGCCGGTT
CAACACCAACATTATCTTGGGATTATTGACCACGCCCCAGCGTACCGGAA
TGGCagcaaaaattataatttatgCTTGACTAAAAAGTATCATATAATAA
CTTCAAACTTAAAGTTGCTTAACAAAAGAACTgaatacacaacacgtctt
ttgcatctttctcacagcttgaaacgtcattacgacttataattagcaat
taagtgaaagaatctgactctcacaggaaagtcttttgggaattgaatga
gtgattttcgataagaaatgcaataaaactgcttcgaaaaatcatttaat
gagggtaggagagtgaacaataatattattactgcggacatagctagtac
acgagaaatcggcaaaaatctgttacttgtatatccagtgtataataaat
ccttgttCTAACTAAAGGATATAAATTTTGGCtaaatataaaagttattt
gACAATACAGAAAGGACTTTAAACAGCTATGGATAAGATACAATATTCCA
GTTACAAAGGACacaaaaaggttacaaaaat Run BLAST on NCBI protein sequence of TCONS_00012542-protein >TCONS_00012542-protein ID=TCONS_00012542-protein|Name=TCONS_00012542-protein|organism=Clytia hemisphaerica|type=polypeptide|length=103bp
MVLEVLGDPAPIKTKTCNCRIKIDCPLNGKCLQKSVIYKFHVKANPEDDG
VHYIGLTESTFKNRWYNYRHDFRNESKEKSTELSKHVWSLKKAGSTPTLS
WDY Run BLAST on NCBI transcript from alignment at sc0000145:515010..518185+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00012542 ID=TCONS_00012542|Name=TCONS_00012542|organism=Clytia hemisphaerica|type=transcript|length=3176bp|location=Sequence derived from alignment at sc0000145:515010..518185+ (Clytia hemisphaerica)
TTGCACCAATTCTTTTTACCCTTGTTGAGTCATCAAAGTTGAAAACATAA
AGCAATTCGGTTTATTCAGATAGGAATTATTTTTGTTGTAAAACAACTGC
AACATCGAGACATACCTCTGCGGAGACTCAGACTGCAAAGATTGGATTAA
ATAAAGAAAGTATTGCAATTCAAGGGggatgaataattttttttgatata
aTGTTCAAGTTATCTGTGGTTTTTTGCTTTATACAATTAATCTCCTGGAG
AGACGAGCTGTCAATTGGTTTATCGAAACATGTTGAGTTTGTGGGTTTTT
CTTGCATATTCTGTTATCAATGGTCGGTCAATGGCTCAAAATCTACAGCT
TCCCGCGTGATTTTAATAGACTTCCTCGTCGAATTTTCTTCAAACTTCAT
AGAAATAACCCTAGAACCCCTAGAATCTTCATAGTACTCCTAGAACATAC
ACATATATCATTTTCAGAAATCTAAAGAGTTTTTAATAATTCTACTAAAT
CATTTGCAAAATGTGAAGAGTCAATGCCTTTATAGGAGGGGAATTGGTTG
ATATCAATCAAGGCATAATTCCCAGTATGCTCTTCcaccaaaatatcaaa
accaTACAAATTCAATCCTGAATATTTCTTGATTCTTAAAACAATCTCTC
CAATGGTTTCCTTATCTAAGAGAAAACTCTTTTGGTCTGAAGACAACCAT
GTTTGGTGGTTCGGATCTTCGCTGTGTAAAACTTTATTAAAACATTGACC
CAATTTAGAGATATTAAAAGAATCGAATTCAATATTGATTTCAGGTTGCT
TACAATTGATTTCCAATTCCAAGGAATCTTCAACAACCAGATTCTTCACA
GATGGTCTTTCACATATATGGTACttgaggtaagagtgtttttttctgaa
attttgagtctggatacccaggctattGATTCTTCTCCCCTTATTAAAAT
CCATCACCTTAAATTGATAATTTGCTActaatttttcaatatttctatca
caacataatatttttaaattttattttacactTTCTACTCGCAGAAAAGC
AACATAAATTTATATTATATCACGAGGGTTAtaatcattgagtttcaagc
ccgaagggctagaggtcaatctctaacctttctcaggcaagaaaaattga
agccttaaaatatgcgccgtatttttgatgaNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNttttagtttcaatctgtcatttgtgtaaaa
accaggcgggtcgctcaaggccgcgcaactttggtaggatttgttggctt
caaatcctaacaaagagattgacctctagcccttcgggcttgaaactcaa
tggttataaTATCCAATGCGATTCATATAATTATAATATCTTCTTTGTTC
TACATACTTGATGACTGAGCACCTCATAAgttttatttctcaaaaaaatt
gataaccCTTTTATACTACTTTATACGATCAAATAACCCAGTTTCGaaat
tttatgatatatttATGAAAAGGCACCTGCTGGACCTCCCTAATacgttg
ttttgaaaattatccCTTAAAATATGATATTTGAAACCTGACATTATTTT
GTgatattttggaaaatcttttgatagaaaaaaggttttttgggacAGAA
ATGAGGCACTAGAAACTTTATATTCCCATGTCTGAATGATTCAggctttc
aatttctcttgTTATTGACagatcttaaattttcagatataggcTACCTA
TATTTtctgtaggttttaaggggtatccactggtagggAAAAAAATTGGT
GATGTGTGATTTGGGATTTTTTGAAGAGCAAATTAAGGCAAATTTAGGTG
ATTAACGTGATGAGGCCCTCATGAGGGTAAATAGTTTGGCGGTATATTGA
TTAAAATGATGAATATATTCACAAATACAAAAAGGTTATAAAATTCCACt
caaaaaggttacaaaattttttacaaaaagctTAATATATAGTATATGAC
TCTTTAAGAGAAGTAGTTTTGATTCAGAAAATATACAGCTCTGGAATAAT
GGTTATATATCAAATTAAGTTACAGGATAAATAAAGGATCGTAAAGCGTT
TCTTACAAATCGTTTCTTTCCAAAAGCTGACAAATTCCACAAAATCCTAA
ACAGAAACACCCTGAAAGTCAGCTACAGTTGCTCACCCAACATATCGTCT
ATCATCTCTTCTCACAATAAAAAGGTTTTAGGAGATCCTGcaccaatcaa
aacaaaaacttgtAATTGTCGAATAAAAATTGATTGCCCACTCAACGGAA
AATGCCTCCAAAAAAGCGTTATTTACAAATTCCACGTAAAAGCAAACCCA
GAAGACGACGGTGTTCATTATATTGGTCTCACTGAGAGCACTTTCAAAAA
TCGCTGGTACAACTATCGCCATGATTTTAGAAATGAGTCCAAAGAAAAAT
CTACTGAACTATCTAAACACGTTTGGAGTTTGAAAAAAGCCGGTTCAACA
CCAACATTATCTTGGGATTATTGACCACGCCCCAGCGTACCGGAATGGCa
gcaaaaattataatttatgCTTGACTAAAAAGTATCATATAATAACTTCA
AACTTAAAGTTGCTTAACAAAAGAACTgaatacacaacacgtcttttgca
tctttctcacagcttgaaacgtcattacgacttataattagcaattaagt
gaaagaatctgactctcacaggaaagtcttttgggaattgaatgagtgat
tttcgataagaaatgcaataaaactgcttcgaaaaatcatttaatgaggg
taggagagtgaacaataatattattactgcggacatagctagtacacgag
aaatcggcaaaaatctgttacttgtatatccagtgtataataaatccttg
ttCTAACTAAAGGATATAAATTTTGGCtaaatataaaagttatttgACAA
TACAGAAAGGACTTTAAACAGCTATGGATAAGATACAATATTCCAGTTAC
AAAGGACacaaaaaggttacaaaaat Coding sequence (CDS) from alignment at sc0000145:515010..518185+ >TCONS_00012542 ID=TCONS_00012542|Name=TCONS_00012542|organism=Clytia hemisphaerica|type=CDS|length=624bp|location=Sequence derived from alignment at sc0000145:515010..518185+ (Clytia hemisphaerica)
ATGGTACttgagGTTTTAGGAGATCCTGcaccaatcaaaacaaaaacttg
tAATTGTCGAATAAAAATTGATTGCCCACTCAACGGAAAATGCCTCCAAA
AAAGCGTTATTTACAAATTCCACGTAAAAGCAAACCCAGAAGACGACGGT
GTTCATTATATTGGTCTCACTGAGAGCACTTTCAAAAATCGCTGGTACAA
CTATCGCCATGATTTTAGAAATGAGTCCAAAGAAAAATCTACTGAACTAT
CTAAACACGTTTGGAGTTTGAAAAAAGCCGGTTCAACACCAACATTATCT
TGGGATTATTGAATGGTACttgagGTTTTAGGAGATCCTGcaccaatcaa
aacaaaaacttgtAATTGTCGAATAAAAATTGATTGCCCACTCAACGGAA
AATGCCTCCAAAAAAGCGTTATTTACAAATTCCACGTAAAAGCAAACCCA
GAAGACGACGGTGTTCATTATATTGGTCTCACTGAGAGCACTTTCAAAAA
TCGCTGGTACAACTATCGCCATGATTTTAGAAATGAGTCCAAAGAAAAAT
CTACTGAACTATCTAAACACGTTTGGAGTTTGAAAAAAGCCGGTTCAACA
CCAACATTATCTTGGGATTATTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00012542-exon-sc0000145-1491911889:515010..515888 | TCONS_00012542-exon-sc0000145-1491911889:515010..515888 | Clytia hemisphaerica | exon |
| TCONS_00012542-exon-sc0000145-1510915933:515010..515888 | TCONS_00012542-exon-sc0000145-1510915933:515010..515888 | Clytia hemisphaerica | exon |
| TCONS_00012542-exon-sc0000145-1575043694:515010..515888 | TCONS_00012542-exon-sc0000145-1575043694:515010..515888 | Clytia hemisphaerica | exon |
| TCONS_00012542-exon-sc0000145-1491911889:517384..518185 | TCONS_00012542-exon-sc0000145-1491911889:517384..518185 | Clytia hemisphaerica | exon |
| TCONS_00012542-exon-sc0000145-1510915933:517384..518185 | TCONS_00012542-exon-sc0000145-1510915933:517384..518185 | Clytia hemisphaerica | exon |
| TCONS_00012542-exon-sc0000145-1575043694:517384..518185 | TCONS_00012542-exon-sc0000145-1575043694:517384..518185 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000145 | supercontig | sc0000145:515010..518185 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000305 | GIY-YIG_SF |
Blast
The following BLAST results are available for this feature:
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