TCONS_00012539 (transcript) - C. hemisphaerica

Overview
NameTCONS_00012539
Unique NameTCONS_00012539
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length528

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00012539 ID=TCONS_00012539|Name=TCONS_00012539|organism=Clytia hemisphaerica|type=transcript|length=528bp
CTATTTTAAGAGCGTCTACTAGTGATTCTTCATTCTGTTCCAACAACTCA
ACACCATCGATCGCATGAAAGCGGAACAATTCACAATATTCTTCCAGAGA
AATGTCTTTCAGCCAATCGCAAACATCTTCAACGGTCCATGATTTGAGTT
TTACTCGCCAATCACCACTGCTACTTTTTAGATTGTCAGGTGCAGGGGGT
TCTCTTTTGGTCGGTTGAAACATATTGCTTCTTTTAGATAACCATGAGAC
ACCAGGAGGTGGCTCAAAAAATTTATTAGTCGATGTAGCTGGAGGTGTTC
CGCTATGTATTGCTGAAGGTGGAGGAGGTGGTCCACTGCGTATTACTGAA
GGAGGAGGTGGTGGTCGACTGCGTGTTACTGAACGAGAAGGAGGTGGTTC
ACTGCGTGTTGCTGAAGGTGGAGGTGGTGGTCCACTGCGTGTTACTGAAC
GAGAAGGAGGTGGTTCACTGCGTGTTGCTGAAGgaggaggaggtggTCCA
CTGCGTATCGCTGAAGAAGAAGGAGGAG
Run BLAST on NCBI

transcript from alignment at sc0000145:481551..482747+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00012539 ID=TCONS_00012539|Name=TCONS_00012539|organism=Clytia hemisphaerica|type=transcript|length=1197bp|location=Sequence derived from alignment at sc0000145:481551..482747+ (Clytia hemisphaerica)
CTATTTTAAGAGCGTCTACTAGTGATTCTTCATTCTGTTCCAACAACTCA
ACACCATCGATCGCATGAAAGCGGAACAATTCACAATATTCTTCCAGAGA
AATGTCTTTCAGCCAATCGCAAACATCTTCAACGGTCCATGATTTGAGTT
TTACTCGCCAATCACCACTGCTACTTTTTAGATTGTCAGGTGCAGGGGGT
TCTCTTTTGGTCGGTTGAAACATATTGCTTCTTTTAGATAACCATGAGAC
ACCAGGAGGTGGCTCAAAAAATTTATTAGTCGATGTAGCTGGAGGTGTTC
CGCTATGTATTGCTGAAGGTGGAGGAGGTGGTCCACTGCGTATTACTGAA
GGAGGAGGTGGTGGTCGACTGCGTGTTACTGAACGAGAAGGAGGTGGTTC
ACTGCGTGTTGCTGAAGGTGGAGGTGGTGGTCCACTGTGTGTTACTGAAC
GAGAAGGAGGTGGTTCACTGCGTTTTGCTGAAGGATGAGGTGGTGGTCCA
CTGCGTGTTACTGAACGAGAAGGAGGTGGTTCACTGCGTGTTGCTGAAGG
TGGAGTAGATGCTCCACTGCGTATTACTgaaggaggaggaggaggtggTC
CACTGCGTATCGCTGAAGGTGGAAGAGGTGGTTCACTGTGCATTGCTAAA
GTTGGAGGAGGGGGTGGTCCACTGCGTATTAATGAAGGAGGAGGTGGTGG
TCCATTGCGTATTGCTGAAGGTGGAGGAGGTGGTGGTCCACTGCGTATCG
CTGAAGGAGGAGGAGGTGGTGGTGGTCCATTGCGTATTACTGAAGGAGGA
GGAGGTGGTGGTCCACTGCGTATCGCTGAAGGAGAAAGATGTGGTGGTCC
ACTGCGTATCGCTGAAGGAGGAGGAGGTGGTGGTGGTCCATTGCGTATTA
CTGAAGGAGGAGGAGGTGGTGGTCCACTGCGTATCGCTGAAGGAGAAAGA
TGTGGTGGTCCACTGCGTATTGCTGAACGAGAAGAAGATGGTCCACTGCG
TATTACTGAAGGAGGAGGAGGTGGTGGTCCATAGTGTATTACTGAAGGCG
GAGGATGAGGTGGTTCACTACGTTTTACTGAAGGAGGAGGTGGTGGGCCA
TCGCGCATTACTGGAGGAGGAAGTGGTGGTTCACTCTGCATCGCTGAAGG
AGGAGGATGTGGTGGTCGACTGCGTATTGCTGAAGAAGAAGGAGGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007036XLOC_007036Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00012539-exon-sc0000145-1491911889:481551..481973TCONS_00012539-exon-sc0000145-1491911889:481551..481973Clytia hemisphaericaexon
TCONS_00012539-exon-sc0000145-1510915933:481551..481973TCONS_00012539-exon-sc0000145-1510915933:481551..481973Clytia hemisphaericaexon
TCONS_00012539-exon-sc0000145-1575043694:481551..481973TCONS_00012539-exon-sc0000145-1575043694:481551..481973Clytia hemisphaericaexon
TCONS_00012539-exon-sc0000145-1491911889:482040..482099TCONS_00012539-exon-sc0000145-1491911889:482040..482099Clytia hemisphaericaexon
TCONS_00012539-exon-sc0000145-1510915933:482040..482099TCONS_00012539-exon-sc0000145-1510915933:482040..482099Clytia hemisphaericaexon
TCONS_00012539-exon-sc0000145-1575043694:482040..482099TCONS_00012539-exon-sc0000145-1575043694:482040..482099Clytia hemisphaericaexon
TCONS_00012539-exon-sc0000145-1491911889:482136..482168TCONS_00012539-exon-sc0000145-1491911889:482136..482168Clytia hemisphaericaexon
TCONS_00012539-exon-sc0000145-1510915933:482136..482168TCONS_00012539-exon-sc0000145-1510915933:482136..482168Clytia hemisphaericaexon
TCONS_00012539-exon-sc0000145-1575043694:482136..482168TCONS_00012539-exon-sc0000145-1575043694:482136..482168Clytia hemisphaericaexon
TCONS_00012539-exon-sc0000145-1491911889:482736..482747TCONS_00012539-exon-sc0000145-1491911889:482736..482747Clytia hemisphaericaexon
TCONS_00012539-exon-sc0000145-1510915933:482736..482747TCONS_00012539-exon-sc0000145-1510915933:482736..482747Clytia hemisphaericaexon
TCONS_00012539-exon-sc0000145-1575043694:482736..482747TCONS_00012539-exon-sc0000145-1575043694:482736..482747Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000145supercontigsc0000145:481551..482747 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	4.08119	4.4472	0	1.63996	1.67021	1.53476	0	0	0	1.7913e-05	1.24462	1.61728	3.16353	2.75286	2.44833e-07	0	0	0.316753	4.57998e-05	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001660SAM
IPR013761SAM/pointed
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00012539 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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