TCONS_00012521 (transcript) - C. hemisphaerica

Overview
NameTCONS_00012521
Unique NameTCONS_00012521
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length913

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00012521 ID=TCONS_00012521|Name=TCONS_00012521|organism=Clytia hemisphaerica|type=transcript|length=913bp
ttttacagAAACTAAAtaattaaaacataaaaaatgctGTCGACAGTCGC
TCGAAACACGCGTCGTGCACTTTCAAAACAAGCTCTGCAATCAGTACAAG
TGGCATCAAAACACACTTTGCCAGCTCTAGATTATGAATACTCATCATTG
CAACCAATCATCTCTGAAGAAATTATGACCCTTCATCATTCTAAACATCA
TCAAACGTACGTTAATAATTTGAACGCCGCGGAAGAACAGCTACAAGATG
CTCTGTCTCAAGGCGACTTACCAAAAGTGATAGGACTTCAACCTGCACTT
CGATTCAACGGAGGAGGACACATCAATCACACCATCTTCTGGACCAATCT
CTCACCCAACGGTGGAGGCGAACCCAAAGGTGATTTGTTAGCAGCGATCG
TTCGTGATTTCGGATCATTTGCAAACATGAAAGAACAATTGACGAATGCA
ACTGTTGCTGTTCAAGGCTCCGGTTGGGGATGGCTGGGTTATGATAAAAA
GACTTCAATGTTGACAATCGATGCCATGGCAAACCAAGATCCTCTACAAT
CGACCAGCGGACGTATCCCGTTGCTTGGTATTGACGTTTGGGAACACGCT
TATTACCTACAGTATAAGAACGTTCGTCAGGATTACGTCAAAGCCATCTT
CGATATTGTCAACTGGTCAAATGTCTCTGAACGATACGAGAACGCTATGT
GATAGTAGGAAAGAGCTTATTATACTGTCTTCATTTTCTATCATctctgg
aaaatttctttcaaatccaGCGCTGACAGGCTGAGAGATATGATTGATTG
GAACTTTTTGTACAAAATTAAATATGGTgaatttaaatcttttttttaat
ttaccaATTTAAATTTCTTCATTAGAAATTTTAGAAAGAATATATTTTTA
ACAACTAGAAATT
Run BLAST on NCBI

transcript from alignment at sc0000145:338957..357821+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00012521 ID=TCONS_00012521|Name=TCONS_00012521|organism=Clytia hemisphaerica|type=transcript|length=18865bp|location=Sequence derived from alignment at sc0000145:338957..357821+ (Clytia hemisphaerica)
ttttacagAAACTAAAtaattaaaacataaaaaatgctGTCGACAGTCGC
TCGAAACACGCGTCGTGCACTTTCAAAACAAGCTCTGCAATCAGTACAAG
TGGCATCAAAACACACTTTGCCAGCTCTAGATTATGAATACTCATCATTG
CAACCAATCATCTCTGAAGAAATTATGACCCTTCATCATTCTAAACATCA
TCAAACGTACGTTAATAATTTGAACGCCGCGGAAGAACAGCTACAAGATG
CTCTGTCTCAAGGTGAGGGATGTCATTTGATTCAACCTACAGATTATAAT
TTTAACTATACACACTCATTTTTATTAGCATAAGGGGAAATCGGATCGAG
GCTCATTATGCTTAGGGATATGCTTTACAACTTtacaaatgcttttttca
agACATCGTAAATTTTGacagattttcattttccttttactTTTATATGA
TTTCGTTGTGATAGAGTATTCTTTGTCTACCTCACTGTCTCATTCTGTCT
CATTGACTCtattttcgaaatttgatgaaaaaatttctcagcCTCGAGCT
ATGTTTTGCATTATGCTTTTTTGCAATtattattttgtgattttgagcct
aagtatgtttgaaaatgtttaaaaatgcgTTATTTAGCGCAATTTAGTAA
AAGGAATGAATACGTAGTGTTGGTGTTATTTCTGAGGTCGGGGGTCGTTT
TTTtcgtttgtcgttctttttgccGTTTtcaatagttatttgtcgttctt
tttagatggtctggaaacgttagTTGAACAATCTCTTAAGATTTATTATT
AAAATTCGATGGCCGACTTCTAAAGATAAACTTAATAAATTGATTTGTGT
CACCATTTATAGCTTGTTGAGCTAAGATTGGGTTTCCTGACGGTCACTTT
ATTTCATAATTAAACCAAGCTAGATAatctaagtaagtaagtttacGAAT
GAAGTCAACGGCGACCCAGGGCGACCCGAAGATTTGCTTTTTCTTAGGCT
GTCTACCTGAATGTGGGAAGGAAATCTACACGCTCTAATTTGAACatata
ttattcgaatctttgaATGATCCGAATTAAAACATTGGTCCTCTCAACTA
AAAAATAGTGTAAAATAGTAATCTGAACTTTTTCTAGAATTCGAAGAAAG
TATTTATCCCTTTAAGATcggattagagagagtcaactgtatttaaaCCA
TCAGTCTTGTACTTGATCTTTCATTGGTTGAGAGACatcttattttttca
ttcatatTATTATCATTTTTCTCTCTCACATAACGCGGCTGATAACCGAA
GTATTGATTGACGCCAAATGAGTTAAGTAAAGCTGAAATTGCAGATGACG
TAaaacgataaactcggtatacattATTTTTTCAGGCGACTTACCAAAAG
TGATAGGACTTCAACCTGCACTTCGATTCAACGGAGGAGGACACATCAAT
CACACCATCTTCTGGACCAATCTCTCACCCAACGGTGGAGGCGAACCCAA
AGGTATAGACACTTTTGATACATCATTGTGCTGGTCCAAATTGCTTAGCC
CAAGATTGGGTTAAACTCTTATACTAACTTTATGCCTATGATTGAAACAT
GATGGATTCATATATGGCTTAGCTCTGGCCTGTCTAGAGATGATGCTATT
ATAATCATAGTGTCAGCCCCCCAGAAATCTAAGAAGCACCTAGACCAGGT
TAGGGATTGGGGGCTAATATTTTGCAaatctttggggttacctattcatt
ggGGTACCTAGCTGTTTTGATCGAAGCTCTGGGGNACATTATTTTTTCAG
GCGACTTACCAAAAGTGATAGGACTTCAACCTGCACTTCGATTCAACGGA
GGAGGACACATCAATCACACCATCTTCTGGACCAATCTCTCACCCAACGG
TGGAGGCGAACCCAAAGGTATAGACACTTTTGATACATCATTGTGCTGGT
CCAAATTGCTTAGCCCAAGATCGGGTTAAACTCTTATACTAACTTTAGTC
CTATGATTTAAACATGATAGATTCATATATGGCTTAGCTCTGGCCTATCT
AGAGATGATGCTATTATAATCATAGTGTCAGCCCCCCAGATTGCACCTAG
ACCAGGTTAGGGATTGGGGGCTAATATTTTGCAaatctttggggttacct
attcaatGGGGTACCTAGCTGTTTTGATGGAAGCTCTGGGGACTGTGTAT
ATTTtccatattgaatatttcaaaatatttaaaattattgaattttttac
cCCAGCGCCCAGTTTCCCTTCTAATTTAGATTCTTACTTACTTCTTTCCA
CGtcatcttttgctatatttttcaaatgtgattgttttgatttacagccg
ccatcCTAATAGCATAATAACAAAGTTTTTTTCTCATGCGTGTGCGCTTC
CCGCGCTAGCATAGAGAAGGTAAAACCTTATTATAAGAAagggggtacct
aactcaaagcaatttctcaaggggacctaactcgttgggggcgccatgct
tcaatgggggcacctgaaaagtgggctgaaaccatgataATGCTTATGAG
ATGAACGAGAGAAACTCTGTATAAGACGACTGAAGAAGAATTTCGCTCAA
TTTACGGTATAGGTATATATTTACAAGGTaaataattaagaaaaaaatcc
atgatgagaaaaataatttacaaaaattgagaaataggaaaaaatctgcg
aagaaaaaaacaaaattatttataTAAAAGTTATTTACAAAATCCtaggt
taattttttttgatttttatgaaaatattaaatatacatttgataaagaa
taaataaatgcGACGCTACGGCTGATGAATGAAATCAGAGAAATTGATGA
CCGAAATATTTGGTTCTGTATTCCTCTGCTTGTCGCctgaaaacgaaaaa
aaagagggtgattaaaatgttgTACGATGAGTTTGTGTCAAGTGCCAACA
ACAGAAGAATGTTTTCActtcaaaacattaaaaattagTTCCAGACAGAT
CTTTTTGTTGAAAGGANAAATGTTTTCACTTCAAAACTCATTAAAATTAG
TTCCAGACAGCTCTTTTTGTTGAAAGGATTGTCAATTTACTTGTCTTCAT
TACTTGAACACATTCGCGATTGACTTCTTTAACAATCAGATAAGGGGAAC
ACGAAAGAAATATTCTATTGAAATTTACTTGCTTAcacattttgtttgtt
tgagcCATCACGGAGGTTGGAGGCTTCTGCAATGTCGCCTGGACCGTACT
CGAAGTAATTTTGCAAGAGGTTGTAAATCCTGAAAAACGAAGAGAACGGA
AGATGACTTATATTCATTAGCTTTAGATTCAGAATGTCATCCAAACCTTG
ATTGCGCAATTTTTATGAATTCGGTTGGAATTCTATCACTCCTAGAACAA
ACATCGAACTAAATCTTAAACGGTAAAATGCTAACTACTTCGAAACAAAT
TCGACAATCAAATCTTAATTGATGAATTAGATTCGATTTAATTTGATTTG
GTCTGGTGTTCGTTTCCTTTCGATTGCAATCGTGTGATAACGAATCGATT
GTACGAAGATACTTACTTTGAGTTGGGTTGAGCATAATCGATGACAGTCT
TATTGTCGAGATCTTCGTAAAGAGGGTTCATCTGGTGAGCCATCAATAAT
TGAAGAATATCTGCTCATTGATCAATGACTGCAATATGAGCTGTGGTTCT
ATAATAAAAGTCGAAGTTGAAAGAGTTAAAGGATGGGAATTGCATATTGA
TGCATTTGATTCCATTTTATCTTTAAACGAATATGTCATAAGATATGAAT
TTGAATGTGAACAGTGTTATCTTTTTCGCCACTTGGATATGCGATTTCCT
CAAAAGCCCTGGAGAGCTATTAATGTAGGAGATTTTCTTCCAACAAAGCC
AAAACAAAGCAGATACTCGTAGAACATAATGTTGTTACAATCACTTACCG
ACCGTTGCCTTCTCTGGCGTTCACATCAAGTCCTTGGTGCAACATGTAAT
CGATACACTTCAGAACTACAATGTGTTTATTGTTCATCAAAGCCATATGT
AGAAAGCTCATTTCACCCAATCTGCTTTCACCCTGtggagaaaattgaaa
tttcaataagCCTACAATTTCATTTGatcaaaaatagctaaaatcgACGA
AATAGATCCAGTTTTTCATGCAGAAAATAAACAATGTTACTTTGTATTTT
ATCCCAAAATGCTTCTTGATGCCAAAAATACAACTTGAAGATGTTATTAA
GATGTCTAGGTTCTAAGGCCTCTTAAAGGGAGAATGTGGTGTGTAAACTT
ACATTTATTCTTGGTGAGACGTCCCACAAAAGTTTGAACATTTCGAAGCG
TTCATCACCATAGAAATGCAACAAAAGAGTCAAAGCATCACGAGAATCTT
GTGCCTTGATACGTGTGTTAGCGCCTGCTTTGATCAACGCTTTGACGCAC
TCGATGGAACCGATTTCAATTGCCTAAATAGAAGAAATTTATTCAATATG
TAGTAAATATGGTTATTGTACAGCTTATTTTTGTGTTCTTGATGTTAACT
GATGGTGCCAGAATCACCAAAAATAGGTTTAATATTCAATTGAATCTTCA
TTGAAAAACACAGCCCAAGCTCTCTGAAAAATATACCAACGTAAAAGAAT
TTCCCTGATGGAATTAATCCTTATtcataattttcactaaaacaaaAGCC
TGTCTTAAGAAAATCTTGAAAGCTACCTAACACCGGTGACACCAGTCACT
TACTTTATAGAGTGGAGTTTTGCCATGGTAGTCTTGCTTGTTGACATCGA
CACCAGGACATCTCAATAAGATATTTAAAGTTTTAATGCATCGCCAGGAA
GCGGCGAAATGTAGTGCGGTCCTGTTAAAATGAAGATAAATACATTGATA
GTCCCCATGGATGTAAAACCACTTCAAATTAGAGGTTCAAatttctctct
gtaattcgaatctttctccaatttaaagaacattttttcatCCCCCGAAG
ATCGAATTAGACAGAGAGAAAGTCAATGTATAAACAATTTTCATCATCCT
GGGACGAACCAGGCGAGGAAATCTTTTGGCTTTGTTTGATGATCATAGCA
TAAGGCTACTCTGCTTTGTACTTTTTGTACTTTGTAGCGCTTCTAAGAAC
TATCTTTCATATTTTAGTCCATCGTTTTACCTCTTTTGTGCGTCAACTCT
GTTGATTTtctgttgaaatttttcttccttcAACACTTTGCGTAATTTCT
TCAATTTACCTTTCCAGGCGAATCTAAAAGTGGAATAGTAAAATGATTGA
GAATAAATCTTTATTCGTCTTTGTGTTTGAGTTTGCTTCGGTCTGTCTGT
ACCAGACCAACACCATATCTATACAGAAATTCTAAGGNTTCGTCTTTGTG
TTTGAATTTGCTTCGGTCTGTCTGTACCAGACCAACACCATATCTATACA
GAAATTCTAAGGTTTGGCGtaagtattttttcaattttttttacagtgCT
CGATACATATGTAGAGGGATGTCAGTAATTCTTAGTTGAAGATTTTCACC
TGGCAGTTGCAGGATAAAAACGTGTCTTTTCTTCCTTACTAAGGTTTGGC
GTAGAATCTTTCTCAAAAGAGACAATATAAACATAAGATtgtcaaagttt
ttttcatcaacaaagttttttttgtataccatagtaaaaagaaattaaaa
gaatgatTTGTCATTCATTAACGAACATACCTCAAAATAGCGGAAAGTTC
CTCCTCTTTTACTGTCCAATTAGGATAACTGCCTTCTTGAATTTTTCGTC
GGACGCGCAGCTCTTCGACGTAACGTGGTGGTACGCCGTAATCATACGCG
TTATCGATCAAGAACTTGCAATACGCGTCTGCAGACATACGGTGACCGGC
ACCTTCGTCAATCGTCAACGCGTTCGCGACTTCGTGACGAAATTTCTCCA
TCAATTCTTCNTACACCGTAATCATACGCGTTATCGATCAAGAACTTGCA
ATACGCGTCTGCAGACATACGGTGACCGGCACCTTCGTCAATCGTCAACG
CGTTCGCGACTTCGTGACGAAACTTCTCCATCAATTCTTCTGTGTTCTCA
CGGCGTTCATCTAACGTCATTGCGGACGCTTCGTAACGTCGATGTTTCGG
AACCGGAACGATTGTCCGGTTTCCAATAAATAAGCCGGTTTGTTTTTCGC
GTTCGGCTTTCTTTTTCTCATGTTGTCGCCTGAGATCAGCGTCAAACCTT
TTGCTCAGGTTATAGAAAGCACTTTTTCGTTCTTTGCCTGTTTTTTGTGG
TACGTAGACCGTGGCTCTCTTGACGGAAGCATTGACTTGCGCTACAGCTT
TATTTACTTTGTCGTTGTATGTTTCTGAATGGACAGAATATTTGATTGGA
AGCTGTGGCAAAACTTCTTTTCGCTCACTCGCTTGATCTGTGAAACCAAA
AAGTAACGCAAAATGTTTAGATTATGACAGTGACCTTATTAGGAGACACT
TTAAACGTTTCTGATTTAAGTTTAGATTCCactaaatttttctttgaaac
taatAAATTGCAAAAACTTTAGGATATGTTATTTGAACAACACAATGAAA
AGGTCTCCTCACCTTTATTTTGCTTGGCAGATTTGGCAGCTTCTCgtttc
tttttcaagatttcttgaaatttatcCAATGTCTTCTGGTCTTCATCGTC
CATCTCATGAAACAACTTGCAACCGTTGCTCANTCaagatttcttgaaat
ttatcCGATGTCTTCTGGTCTTCATCGTCCATCTCTTGAAACAACTTGCA
ACCGTTGTTCAATTCTCGATCCTTTACTGGTCCATGTTCATCTGAAAGTC
CATGTTCTCCGAGATAATCGTTAACAATCGCACGGTAATGCTTGACACGT
TCACCAGACAAAAGTCCTGGGTCCATGATATTTGTAATACGCTCAACTTC
AGTCAAACTTCGGCGAACGGAATCGAACTGCATGAAACGCATCATGGTTT
TATCCAAAGCCTCCTCGCTAATGGTGGAGTCCAATTTCCTCAACTCATCC
TTAAGCTCTGGAGTGCACAGCTCCAAGCATTCTTTAAACACGACTCTGGC
TTTCCATTGAGCTTTAGCCTCAATTTCGACTTCTTTTAGATGTTTCAATT
CAACATTGACTTCTGATTGAACCTCGGGTATTCCTGATGACTCAGGGTAT
TGCAAGGAAGATGTCTTCATTCGTTTCTCAGATGGAGTTGGTCGTAAGTG
CAATGATGTGCTTGATGCAACTTTCTTAGGTTCAAGGTCATTCATATATC
TAGAGAACCTCATTTTATGATTTGATGGTACCATTGTTGGTTCTGGTGAT
ATGTTTAAACATTCAAAGACAGTAGAGTTTGAGTACCTGAATAAATTTGG
CTTACTATCTGCCATGGCTCCGCTTGTTAGACAGTTCTCATAGAAATTAA
CGTTGGGTTTGATGCATTGCATGGATTTCCGTCGACCGCCGTTGAAATTG
ATGCGGTTCTCACGCTCTGAAGgaataaaaagaaacatgttCAGGTTTAT
TTTGGTCACTTTGCTGTGAAAGAATCTGAACTGATATGATTTCAAAACGT
CTGAGCCGTCTTGTTCTCGACCCAGCGGAACTTCAATTCACGCTATCATG
CAAATTATTCGACAGCTTAAATGGATTTCATTCgagaaaaatagaagaaa
tgCTCCTATTCACTCTTTGAGATTAGGATCATGAAAATAAGAATCTATAA
GAAAAGCAAAGAAATTAAACAACTTACCCATGATTTGTTCAACACGTTTC
TCCATCTCTTTTATGTGACTTTGCTTCTTGGCGTAATGTTGTTTTTCAGG
TGCATCTGTCGCTTTTGATTCAAAAGGAAGGATCTCTCTTGAATCGCCTG
TTCAACGACATCCTGCTCCTCTTGCCAAAGACCCAAGTCTTGGCACGGCa
aaacaaaaacctttaaaGAGTTCCTCATTTTTATGACGAACTGatggttt
ttatttaaaaaaaactaaattctcTGTTTATGCAACAGAGTCTggttgat
ttttgattgaattgacttcttttaatccaattaaaatatatttcactATA
AATCCAACTTTAAAAAAgctcttttcaaacttttacgGCTTGGTAGGTTG
GGTTTTCAAACGAAACTGAATTGAATTCATAAAAGTGGCTTTCTTtatat
tatttgacgtcaataagtttttgtgacgtcaatttttgatatgTTATCAA
GTTTCAtcgaatttttgtattttttcttttttttcgcgaaagtcTTTATG
ATCAATACggcgaaaatctgaaaataaatatttcttgaaaatagTTTTGT
CGGTTTCATAAAAGATGTTTCAGGataattttaagataagaatTTTTAGc
gatttcaataaattttgattgtaATCAATTTTTACAGAAGTTTGTGGAta
acaaaaaatcgaaaaacagCTTCATTCTGATCTTGAACTCAAAAGTATTT
CATTTATTCTCTTATCTCTTGCAGGTGATTTGTTAGCAGCGATCGTTCGT
GATTTCGGATCATTTGCAAACATGAAAGAACAATTGACGAATGCAACTGT
TGCTGTTCAAGGCTCCGGTTGGGGATGGCTGGTAAGTGGTGGGTAACTAG
TTTTTGCGCGAACAATTCTTCGCTTTTTTCGTTTTGTTATAAAATCACGT
AAATTTAAACCCGTGAAGCACAATGTACCGCGTATAATATTAATATATct
tattggccctttttacgccggcccttatttaACGCGGGCCCCTTTTACGc
gggccctttttacgccacagtctaattttgggcttaggccaTTTAAggcc
gttaataacgccaaaacttgtaaaaatggctacttatacttcaaattagt
aaataatgCTTAAAGGTTTTGGTAGTAAATTGTTGAAAATCCCATTCAAA
ATTACTGATTTTCGTGAGGTCTTAGATATGGATAATTTTtatcttcgaat
catacctaaaatccctTAAATTGAGAAATGATGATAGAAAATTAACGCca
cttttaggtaaaaattgtaaaatctcggcccttattacgccacgtgccca
aaaataacgccaataaaggggcggcgtaaaaagggccgataaggtaagtc
TTTGAGAACGAGGTTTGCAATTATTTTATGCATTTCCGAAAATTGCTTTC
CTTAAAAATTGGGGagagggtggaggatataacagttttcagtgatttac
cccccggacaaagtgacttttggccccccgtacaattttgatgattttcc
taccacctggacaatatatcctccacccccccccccatgtacggaaGAGC
CCATTTCGTCAGTTTTGTTATTAAAATATTAGTCTGGCCATCTCTTTGTA
ACACTTCTTTCCTCGCCAACTGACAGGGTTATGATAAAAAGACTTCGATG
TTAACAATCGATGCCATGGCAAACCAAGACCCTCTACAATCGACCACCGG
TAAGGAAAATGCATTAGTATCTTTTACAGACATTCATAAATTTAagtatt
tgtaaagttttaagcaAAATGAGACTTAATTTTCCAGCTTTATTATACtt
ggctacgtcatatcttccttcgtttccagcgtaaaactcctactcgggta
aggcctaaaagccttgAGCTGTATATTATGTAGACTATATTATCCCTGAA
AAttactgaaataaaaattatgatagAAAATGATGCATGCTAAAACTACT
TTAAACAGGCCATCCAAGAAAATCAATGACATTAAATTAACCATTGTTAA
CCCTTAGTGTCAAATCGCCACAgcccagatgagatggagtttttataaga
tactttaataattggtcatttgaagtaataaaaatgacgcattCTTTAGG
AAAagttgttttattactggttaacgaccaaccaaatcaaataagagctt
gtaaaaactccatctcgtccccaaGAGCCAGGCTACCGACCTATGTATTG
TCTTTCATTCCGTTTCTTTATTTCAGGACGTATCCCGTTGCTTGGTATTG
ACGTTTGGGAACACGCCTATTACCTACAGTATAAGAACGTTCGTCCTGAT
TACGTCAAAGCCATCTTCGATATTGTCAACTGGTCTAATGTATCTGAACG
ATACGAGAACGCTATGTGATTGTAGGAAAGAACTTAAATTACTGTTTTCA
TTTCCTGGCTGGATTGAATGAGCAGGTCCAGGGTAATctcttcagaaaat
tttgaaaatccaggtctggatcaatttttgtaaaaaactaaaTATGATGA
atttaactctttttttttaatttacgaattaaaatttcttcattagaaAT
TTTAGAAAGAATACATTTTTAACAACTAGATATGTCAAAATATATTTAGG
TTACTCTCTCCCCACCCATTGTCTGAACAAATACCAATACAAAGAAATGC
TGCATTGAATTATCTTTCAGATTACAATTCGGTTGAGACCTCTATGCAAA
CTGTTTGTCAATCTATGACTTGTGACGTAGAGCAAGCCTAGCCCCGTTAA
TGAAACAATGTTTTTGGTAACATGACTTATTATCATACTTTCTTTTAGTT
TATGCTATCTGGTCTTTACAGGGAAGTCTTTCTGATTCTGATATTACTAA
TATGTTGCTCTAATAtattataaaatgtttttattttgtagagACTTAAt
aattaaaacataaaaatgcTATCGACAGTCGCCCGAAACACGCGTGGtgc
actttcaaaacaaactctGCAAACAGTGCAAGTTGCATCAAAACACACTT
TACCAGGTCTCGATTATGAATACTCGTCATTGGAACCAATCATCTCtgaa
gaatttatgacccttcaTCATTcgaaaaacatcatcaaacgTACGTCAAT
AATTTGAACGCCGCGGAAGAACAATTAGAAGATGCTCTGTCTAAAGGTGA
GGAATGTCATTTAATCTAACTCACAGATTCTACTTCAAGATTTTCCTTAA
ATTCAACCTGTACTAGACCGATTGGGTCAattctttctgtaattcgaatt
agGCCCCCTTGGCTTAAAAGTGGTATAATAAATACTCTCTATTCCGAATC
TTTCTATTATGCAATAGAAGTGGCCCCTTTAAGATGGAATTATAGAAATA
GGTATTTAAATCATCTTTTACTtgaactttttcattgattgatTGGCATC
TTATTTCTTCAGCCGACTTCAACCAGCACTTCGATTCAACGGAGGAGGCC
ACGTCAATCACACTATCTTCTAGACCAATCTCTCACCCAACGGTGGAGGC
GAACCCGAAGGTAAAGACACTCCTTATATGTCGGCCAGATTGGTTATTCC
GAGATTAGGTTCTTTAATTTCTACCTGATTTGCGAAAATAATTCTACGCG
AAAATCTATCCACTTAAGGTTATCTGAAACTAACTGTCCTATGATTTAAA
CCTGATTTAAAACGTGGTCGATTTATATATATCTGGCCTATCCAAAGATA
AAGGAGAAAAGACGGATATGAGACGAGTGAAGaagaattttaataaattt
acggTATAGGTATATATTTACATGGTAAATAATTAAGAACAAAATCCAcg
atgagaaaaataatttacaaacattggaaaatgaggaaaaaatctgcgaa
gaaaaaacaaaattatttataaaaaagctattacaaAATCCTaggttaaa
atttttgatttttatgaaaatattaaaaaaacgtttgataaaaaatttat
aaatatataGACACAACGGCTGATGAATGGAATCAGAGAAATCTATGTCC
GAAATATTTGGTTCGGTATGCTTCTGCTTGTCggctgaaaacgaaagaaa
agaaagaccaaCGATTAAAATATTGTACAATGAGTCAAGTGCCTACAAAA
ATGAAAACGTcctcaattattttcaaaacttttgagtCTTGTCTCAGATA
AATTTGCTGTTTACTGTATTGAAGGCATTACCAGTTTAATTTTACTTGTC
CATCATCACATAGACACATTCTTGATTGACCACTTAACCAATCAGGTCTA
ATTAATTAATAATGGAAACACAGAGAAAGAAAGATTCTATGAAATCTACT
TGCTTACATGTTGTGTTTGTTTGAGCCATCACGAAGGTTGGATGCTTCTG
CAATGTCACCTGGACCATACTCGAAGTAATTTTGCAAAACGttgtaaatt
ctgaaaaacgaagaaaatgaagaaatgagTTATGATCATTCGTTTTGAAT
TCAGAATGTAACTCACTTGAAGGTTTGATGAATCTTGGAACAAATCCCGG
ACAAAATCGAAATGGTGAAGTGACAGCTACTTCGATTCAAATTCGACGAC
CAATTATTTTCCATTGAATTCGACCGGTCTGTCTTATTTTCCTTGCAATG
GCGACCGTGTGATAAAGAATCGATTGCACGAAGATACTTACTTTGAGTCG
GGTTGAGCATAATCGATTACAGTCTTATTGTCAAGATCTTTGTAAAGAGG
GTTCATCTGGTGAGCCATCAATAATTGAAGAATATCTGCTCGTCCATCAA
TGACTGCAATATGAGCTGCGGTTCTATAAGTTGAAGTTGAAAGAGTTAAA
GCATGGGAATTGCGTATTGATACATTTATTCCATTTTGTCTTTAAACGAA
TATGTCATAAGATATGAATTTGAATGTGAGCAATGTTATCTTTTCCGCCA
CTTGGACATGAGATTTCCTCATGTNATAGTGATACATTTTATTCCATTTT
GTCTTTAAACGAATATGTCATAAGACTTGAATTTGAATGTTAAGAATGTT
ATCTTTTTCGCCACTTGGATATGCGATTTCCTCAAAAGCCCTGGAGAGCT
ATCAATGTAGGTGATTTTCTTCCAACTTAAGCCAAAACAAAGCAGATAAT
ATAAGTAGAAAATAATGTTGTTGCAATCACTTACCGCCCGTTGCCTTCTC
TGGCGTTCACATCGAGTCCTTGGTGCAACATGTAATCGATACACTTCAGA
ACAACGATGTGTTTATTGTTCATCAAAGCCATATGTAGAAAGCTCATTTC
ACCCAATCTGCTTTCAGCCTGTGAAGAAAATTGgatattgaaatttcaat
ttcaagtcaACATACTATTCCATTACATTAAAAATAGCTAAGATTAGAGC
CTAGAAGACGAAATGGGAACAAATCTTTCTGTAGTGTTATAAGCAGATTT
TGAACAATGTTAAGTGGAAGAAATTTGCCTCAATGCCTCTTGGTGATAAA
CATGTATATCGAATATGTCATTACGATTCAATCGAGGACCTAGGCCTCTT
AAAGGGAGAGTGCGGTATGTAACTTACGTTTGTTCTCGGTGAGACGTCCC
ACAAAAGTTTGAACATCTCGAAGTGTTCATCACCATAGAAATGCAATAAG
TGAGTTAAAGCATCACGAGAATCTTGTGCCTTGATACGTGTGTTAGCGCC
TGCTTTGATCAACGCTTTGACGCACTCGATGGAACCGATTTCCATGGCCT
AAATAGAAGAAATTTATTCATATGTAGTAAATATGGTTATTGTACAATTT
ATTTTTGAGTTATTGATGTTGATTACGCCCTAGAACCACCGAAAAGAGGT
TTGGTAACATATGATCAATCAAATCTCCATTGAAAACATAGCTCGAAATC
CCCGAACGAATATGTTAAAAAGAATGTCCCTAATGGAATTAATCTTTCTT
CatgattttcactaaaacaaaaagttgtcttaagaaaatctttaaagttA
CTCGGTTTTAACTTAAATGAATAGTCACTTACTTTATAGAGTGGAGTTTT
GCCATGGTAGTCTTGCTTGTTGACATCGACACCAGGACATCTCAATAAGA
TATTCAAAGTTTTAATGCATCCCCAAGAAGCGGCGAAGTGCAGGGCGGTT
CTGTTAAagtgaagagaaaaatattgaaagataTAGTCCCCATGGATATA
TAAACACTTCAAATTAGAGTGTGAATACGAAAAATAATAGAAGACGTGTC
CAAAAGTTTAAGTTTCTCCGTGTGAGTATTCCTGGAAAAGGAAACACAGT
CAACTCTCTTTGTTTTGAACCTCtgtttttcgaatctttctctgatTCGA
AGCAAACTGTATAAACAATTTTCATCAGTCTAGACGAACCAGGCGAGGAA
ATCTTTTTGGCTTTGTTTGATGATCATAGCATAAGGCTACTCTGTTTTCT
ACTTTTTGTACTTTGTAACCCTTCTAGTTTACTCGTCAAATTCTTAGAAC
TATCTTTCATATTTTAGTCCATCATTTTACCTCTTTTGTGCGTCAACTCT
GTTGATTTTCTGTTGAAATTTCTCTTCCTTCAACACTTTGCGTAATTTCT
TCAATTTACCTTTCCAGGCGAATCTAAAAGTGGAATAGTAAAATGATTGA
GAATAAATCTTTATTCGTCTTTGTGTTTGAGTTTGCTTCGGTCTGTCTGT
ACCAGACCAACACCATATCTATACAGAAATTCTAAGGTTTAGcgtaagta
tttttttaatttttttttacagtgCTCGATACATATGTAGAGGGATGTCA
GTAATTCTTAGTTGCAGATTGTCACCTGGCGGTTGCAGGATAAAAACGTG
TCTTTTCTTCCTTACTAAGGTTTGGCGTAgaatctttttcaaaagaacca
aTATAAACATAAGATTGTCAAAGTTTAGTCAAAATTTACTTTCATcaaca
aagttttttttgtataccatagtaaaaagaaattaaaagaatgatTTGTC
ATTCATTAACGAACATACCTCAAAATAGCGGAAAGTTCCTCCTCTTTTAC
TGTCCAATTAGGATAACTGCCTTCTTGAATTTTTCGTCGGACGCGCAGCT
CTTCGACGTAACGTGGTGTTACGCCGTAATCATACGCGTTATCGATCAAG
AACTTGCAATACGCGTCTGCAGACATACGGTGACCGGCACCTTCGTCAAT
CGTCAACGCGTTCGCGACTTCGTGACGAAACTTCTCCATCAATTCTTCTG
TGTTCTCACGGCGTTCATCTAACGTCATTGCGGACGCTTCGTAACGTCGA
TGTTTCGGAACCGGAACGATTGTCCGGTTTCCAATAAATAAGCCGGTTTG
TTTTTCGCGTTCGGCTTTCTTTTTCTCATGTTGTCGCCTGAGATCAGCGT
CAAACCTTTTGCTCAGGTTATAGAAAGCACTTTTTCGTTCTTTGCCTGTT
TTTTGTGGTACGTAGACCGTGGCTCTCTTGACGGAAGCATTGACTTGCGC
TACAGCTTTATTTACTTTGTCGTTGTATGTTTCTGGATGGACAGAATATT
TGATTGGAAGCTGTGGCAAAACTTCTTTTCGCTCACTCGCTTGATCTGTG
AAACCAAAAAGTAACGCAAAATGTTTAGATTATCATTGACAGTGACCTTA
TTAGGAGACACTTTAAACGTTTCTGATTTAAGTTTAGATTCCactaaatt
tttctttgaaactaatAAATTGCGAAACTTTAGGATATGTTATTTGAACA
ACACAATGAAAAGGTCTCCTCACCTTTATTTTGCTTGGCAGATTTGGCAG
CTTCTCgtttctttttcaagatttcttgaaatttatcCAATGTCTTCTGG
TCTTCATCGTCCATCTCATGAAACAACTTGCAACCGTTGCTCAATTCTCG
ATCCTTTACTGGTCCATGTTCATCTGAAAGTCCATGTTCTCTGAGATAAT
CGTTAACAATCGCACGGTAATGCTTGACACGTTCACCAGACAAAAGTCCT
GGGTCCATGATATTTGTAATACGCTCAACTTCAGTCAAACTTCGGCGAAC
GGAATCGAACTGCATGAAACGCATCATGGTTTTATCCAAAGCCTCCTCGC
TAATGGTGGAGTCCAATTTCCTCAACTCATCCTTAAGCTCTGGAGTGCAC
AGCTCCAAGCATTCTTTAAACACGACTCTGGCTTTCCATTGAGCTTTAGC
CTCAATTTCGACTTCTTTTAGATGTTTCAATTCAACATTGACTTCTGATT
GAACCTCGGGTATTCCTGATGACTCAGGGTATTGCAAGGAAGATGTCTTC
ATTCGTTTCTCAGATGGAGTTGGTCGTAAGTGCAATGATGTGCTTGATGC
AACTTTCTTAGGTTCAAGGTCATTCATATATCTAGAGAACCTCATTTTAT
GATTTGATGGTACCATTGTTGGTTCTTGTGATATGTTTAAATATTCAAAG
ACAGTAGAGTTTGAGTATCTGGATAAATTTGGCTTACTATCTGCCATGGC
TCCGCTTGTTAGACAGTTCTCATAGAAATTAACGTTGGGTTTGATGCATT
GCATAGATTTCCGTCGACCGCCGTTCAAATTAATGCGGTTCTCACGCTCT
ATGGAAATAATATTAAAGCATAATCAAGTTTATTTTGGTCACTTTGCTGT
GAAAGAATCTGAACTGATGTTATTTCAAGACGTCTGAGCCGTCTTGTTCT
CGACCCAACGGAACTTGGGAAATCATGCAAATTATTCGACAGCGTAAATG
GATTTCATTCGAGAAAAATAGCTCCTATTCACTCTTTAAGGTTGGGATCC
AGAAAACAAGAATCTATAAGAAAAGCAAAGAAATTAAACAACTTACCCAT
GATTTGTTCAACACGTTTCTCCATCTCTTTTACGCGACTTTGCTTCTTAG
CGTAATGTTGTTTTTCAGGCGCCTTAAAGCAGCTTTGCCACTCTCCCTTC
TCTTGCTTTTGATTCAAAAGGAAGGATCTCTCTTGAATCACCTGTTCAAC
GACATCCCGCTCCTCTTGCCAAAGACCCAAGTCTTGGCACGGCaaaacaa
aaacctttaaaGAGTTCCTCATTTCTATGACGAACTGatggtttttattt
tgaaaaatctaaattctcTGTTCCTGCAACAGAGTCTGATTGATTTTTAA
TTGAATTGACTTCTTTTAATCcaattaaaatatatttcactATAAATCCA
ACTTTAAAAAAGCtcctttcaaactttttgcGGCTTGATAGGTTGGGTTT
TCGAACGAAACTGGATTGAATTCATAAAAGTCGCATTCTTtatattattt
gacgtcaataagtttttgtgacgtcaatttttgatatCTTAAATCAATTT
CATcgaattttggtattttcatATCGCGAAAGTAAGTCTTTATTGATCAA
TACGGCGAAAGtctgaaaaaattatttcttgaaaatagttttataaaaga
tatttcaggataattttaagataagaattttaagcgatttcaatagattt
tgattgtAATCAATTTTTACAGAAGTTGGTGGAcaacaaaaaatcgaaaa
acagCTTCATTCCGATCTTGAACTCAAAAGTATTTCATTTATTCTCTTAT
CTCTTGCAGGTGATTTGTTAGCAGCGATCGTTCGTGATTTCGGATCATTT
GCAAACATGAAAGAACAATTGACGAATGCAACTGTTGCTGTTCAAGGCTC
CGGTTGGGGATGGCTTGTAAGTGGTGGATAACTAGAAGAAATCTTCGCTT
TTTTCGTTTTGTTAAAAAATCACGTAAATTAAAACCCGTGAAGCACAATG
TCTCGCGtataatatttctaaaaatcttaggaatgaaaaatgtcaaatac
aCACTTCTCCAGATAAATCAACAGCATTGCGGGCCTCGTTTCTAAATCAA
ATGATTGCTTCAAACGACATTTACACACGTAATATGTTAATATGTTTTCC
CAAAAGACCGTGGATTTTGATATAAAACCGTAAAACTAAATATTGCAAAC
ATTATGTCTGGCGACTGAAGTATCGTAGCAATATAAAGTCATTTAAAACG
AGGTTTGCAATTATTTTATACGCATTTTCGAGAAAAGTGTATTtacgaaa
atcagcgaaaattttattgatgttttatcaaaatattggttTGGCCCCCT
CTTTTATAACACTCGCTATTCGTCTATAACACACTTTCATAACACTCGTC
TATTAGATTTGAGTTAGGAAATGTGTTATATTGTTTTCTCCTTGACCAGA
AACAAGAAGTAGGTTGGATTAAGGAAaggttcgaataatagaattaGAGA
GCCACTGTATTGAACAATTTCTTTACCAACCAACAGGGTTATGATAAAAA
GACTTCAATGTTGACAATCGATGCCATGGCAAACCAAGATCCTCTACAAT
CGACCAGCGGTAAGAAAAATGCATTAGTATCTTTTATACAGACAAGCATA
AATTTAagtttttgtaaagttttaggtAAAATGAGACTTAATTTTCTGGC
TTTATTATCCCTGAAAATTACTGAAATAAAGATTATGATAGAAAAGGATG
CTAAAACTACCTTAACAGGCCATTCAAGAAATTTAATGACATTAGATTAA
CCATTGTAAACCCTTAGTGTCAAATAGCCAGAgcccagatgagatggagt
ttttataagatttcttaataattggtcatttgaagtaaataaaaatgacg
cgttctttagaaaaaggcTACCGACCAAAGTATTGTCTTTCATTCCGTTT
CTTTATTTCAGGACGTATCCCGTTGCTTGGTATTGACGTTTGGGAACACG
CTTATTACCTACAGTATAAGAACGTTCGTCAGGATTACGTCAAAGCCATC
TTCGATATTGTCAACTGGTCAAATGTCTCTGAACGATACGAGAACGCTAT
GTGATAGTAGGAAAGAGCTTATTATACTGTCTTCATTTTCTATCATctct
ggaaaatttctttcaaatccaGCGCTGACAGGCTGAGAGATATGATTGAT
TGGAACTTTTTGTACAAAATTAAATATGGTgaatttaaatctttttttta
atttaccaATTTAAATTTCTTCATTAGAAATTTTAGAAAGAATATATTTT
TAACAACTAGAAATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007033XLOC_007033Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00012521-exon-sc0000145-1491911889:338957..339218TCONS_00012521-exon-sc0000145-1491911889:338957..339218Clytia hemisphaericaexon
TCONS_00012521-exon-sc0000145-1510915933:338957..339218TCONS_00012521-exon-sc0000145-1510915933:338957..339218Clytia hemisphaericaexon
TCONS_00012521-exon-sc0000145-1575043694:338957..339218TCONS_00012521-exon-sc0000145-1575043694:338957..339218Clytia hemisphaericaexon
TCONS_00012521-exon-sc0000145-1491911889:340757..340873TCONS_00012521-exon-sc0000145-1491911889:340757..340873Clytia hemisphaericaexon
TCONS_00012521-exon-sc0000145-1510915933:340757..340873TCONS_00012521-exon-sc0000145-1510915933:340757..340873Clytia hemisphaericaexon
TCONS_00012521-exon-sc0000145-1575043694:340757..340873TCONS_00012521-exon-sc0000145-1575043694:340757..340873Clytia hemisphaericaexon
TCONS_00012521-exon-sc0000145-1491911889:347481..347587TCONS_00012521-exon-sc0000145-1491911889:347481..347587Clytia hemisphaericaexon
TCONS_00012521-exon-sc0000145-1510915933:347481..347587TCONS_00012521-exon-sc0000145-1510915933:347481..347587Clytia hemisphaericaexon
TCONS_00012521-exon-sc0000145-1575043694:347481..347587TCONS_00012521-exon-sc0000145-1575043694:347481..347587Clytia hemisphaericaexon
TCONS_00012521-exon-sc0000145-1491911889:357043..357115TCONS_00012521-exon-sc0000145-1491911889:357043..357115Clytia hemisphaericaexon
TCONS_00012521-exon-sc0000145-1510915933:357043..357115TCONS_00012521-exon-sc0000145-1510915933:357043..357115Clytia hemisphaericaexon
TCONS_00012521-exon-sc0000145-1575043694:357043..357115TCONS_00012521-exon-sc0000145-1575043694:357043..357115Clytia hemisphaericaexon
TCONS_00012521-exon-sc0000145-1491911889:357468..357821TCONS_00012521-exon-sc0000145-1491911889:357468..357821Clytia hemisphaericaexon
TCONS_00012521-exon-sc0000145-1510915933:357468..357821TCONS_00012521-exon-sc0000145-1510915933:357468..357821Clytia hemisphaericaexon
TCONS_00012521-exon-sc0000145-1575043694:357468..357821TCONS_00012521-exon-sc0000145-1575043694:357468..357821Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000145supercontigsc0000145:338957..357821 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
17.4592	19.3624	26.2687	33.2021	20.7689	15.0607	20.5686	25.2209	12.3137	7.98521	3.94827	7.79098	5.57603	2.46446	9.07105	7.3906	10.2942	12.5422	6.50119	6.73778	8.88128	19.1441	13.6473	14.5488	19.0131	13.5669	17.574	6.69905	11.4499	8.88511
Blast
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BLAST of TCONS_00012521 vs. Swiss-Prot (Human)
Match: SODM (Superoxide dismutase [Mn], mitochondrial OS=Homo sapiens GN=SOD2 PE=1 SV=2)

HSP 1 Score: 301.212 bits (770), Expect = 8.958e-102
Identity = 142/218 (65.14%), Postives = 170/218 (77.98%), Query Frame = 1 
Query:   34 MLSTVARNTRRALSKQALQSVQVASKHTLPALDYEYSSLQPIISEEIMTLHHSKHHQTYVNNLNAAEEQLQDALSQGDLPKVIGLQPALRFNGGGHINHTIFWTNLSPNGGGEPKGDLLAAIVRDFGSFANMKEQLTNATVAVQGSGWGWLGYDKKTSMLTIDAMANQDPLQSTSGRIPLLGIDVWEHAYYLQYKNVRQDYVKAIFDIVNWSNVSERY 687
            MLS     T R L+  AL  +    KH+LP L Y+Y +L+P I+ +IM LHHSKHH  YVNNLN  EE+ Q+AL++GD+   I LQPAL+FNGGGHINH+IFWTNLSPNGGGEPKG+LL AI RDFGSF   KE+LT A+V VQGSGWGWLG++K+   L I A  NQDPLQ T+G IPLLGIDVWEHAYYLQYKNVR DY+KAI++++NW NV+ERY
Sbjct:    1 MLSRAVCGTSRQLAP-ALGYLGSRQKHSLPDLPYDYGALEPHINAQIMQLHHSKHHAAYVNNLNVTEEKYQEALAKGDVTAQIALQPALKFNGGGHINHSIFWTNLSPNGGGEPKGELLEAIKRDFGSFDKFKEKLTAASVGVQGSGWGWLGFNKERGHLQIAACPNQDPLQGTTGLIPLLGIDVWEHAYYLQYKNVRPDYLKAIWNVINWENVTERY 217
The following BLAST results are available for this feature:
BLAST of TCONS_00012521 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SODM8.958e-10265.14Superoxide dismutase [Mn], mitochondrial OS=Homo s... [more]
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