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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00012515 ID=TCONS_00012515|Name=TCONS_00012515|organism=Clytia hemisphaerica|type=transcript|length=2798bp
cattacagggtaaaatagaaaaataaataaacaaacaaataaagaaTGCT
ACCTTGGATCCAGCCTTTTTTAAAGCGACCACAGTCAATCATGAATATGT
GCAGAGCTTGTTATTCATCAACAAACTTTCCAACAACATGCCCTGGTGCA
AATTATTTCAAAGAAGGCGAAGAAACCCAGTTAAAACCCGATTCGGAATA
CCCGGATTGGTTGTGGACCCTGGGTGGCCCTAAACGTGAATTCAAAGACA
TGTCACCCGAGGTTGATGGGAAAGCATTTTTCAAAAGAgaacgaaaaatg
aaaattcgagagcAGAATATGATTcgtaaacaaagaagattttaatgtgt
ttgaaaattctttttttgtggatgttgtatatttttcatattttttagat
cttttttttataatttccatGTAACTACAAGAGCTATTACATTAAGTTTT
GCCTCAAAGATTGCTTGCATTTTGACGGTTACTGTAGCATAAGTGTCttc
gaattttgaaaaagtctCCTTTGGATAATTTTTTCATCGCTTATGAAATG
TGGTTTAAATTGTCGAAATTCTATGGCTCTTATATAGTGGTTCAACTCTC
TGCACTCTGTAAGGAAACTCaacatcattttttttcacCAATTACTGATC
ATAAATTCAAACCTTTTTTATTTGGTTATTTATTTTCAGTTAAATAAAAA
TGGAAGTCAAGATTGAAGATGAGATACAGAATGACCCATCACGTTTCAAA
AAAGTCACAACCAAAAGGCTGGTCTTCATCGAATACCCTGGGTTCATAAA
GAATGTAGACAAAATGCTGGCAACCCTGGGTggtgaagaaaaaatttctg
aaacttATCGGAGCGGTAAACAACGTCTTCAAATGACGTATCGACCTGAA
GATTTAAATGCTCATAACGCATGCGCCGATTTGCTACCATTTACTGGTTT
ATTGTTAAAAGTACGGCGCCGAAGAAAGAAAGGAACTGATGAATTCGAAT
ACGAACAAGACATTGTAGGTGTATCACGTGATCGGTATCGGTTCCAGACT
CTCATGGATTATCAATATTTGACACCTGAACCGCTTTGGAATTATTTTAA
ATCAATTCATACTAGTGAGCTAGGGAACACTGACTTTCCACCTTATTTTG
CACCGCCTGTCTTCGCGAGACTCGATTCTGCTGGAGTTTACCAATACAAA
CCGGATCTAGTTACCGGGATTAAAACAGTTGCTAAAGCGCCGGAAATCGG
TATTGATTCTATACGGAAGCGTCGTCATACAGAGTCTATGGCTGCCCTTT
ATTCAAGTGCAGATGTGCCAAGTAAACCTACAGAAAAAGCTTGTACcatt
attgaaaatttgaataaaggtCCAGATGCGGATGCAATAAAACAACTCGA
ACTTATGTTTAACGAGAGACCGTTATGGTCCAAGCTTGCAATATCATGTT
TGGTGGATGTCACTCCTGAGCGATTGAAGAAAGTCTTACAGTATTTTGCT
TATTACTGGTTAAGTGGACCTTGGAGGACCCTTTGGTGTCGCATGGGCTA
CGACCCGAGAAAAGATCCGAAAGCTAAACGTTATCAAATGGTTGAGTTTC
GTTTGAGACGATCAAAAGAGAACAAGAAATGCTATAAAATGATGGTACCC
GCTCGAAGATCCAATAAAGATTACTTAcctcgtaatttgagaaatatcGT
GTCCAGGGCACCGGCCTCAAAGTCAGTCCTCGCCGCCTGTAATGAGCCAG
AGAACAAAGAAGAAGGTGATAAAGAGCCGTATATTTTTCATCCAAATAAA
ATGATTCATTCGCGGAGTATGATGTTACAATTGTGTGATATTCACGACCC
AGCTGTTCAGAAAATCATCGTTGAGAATGACGGTATGGAAACCAGGTGCG
ATGAGAGAGAGGGATGGTTTCCACAAGGTACAATGGGCCGGATCCGTAAT
GAGATGACTAAAACGGTTGACGCCTATTTTGAGAGGCAATACGAgaaaca
aaaatctgaaaatcttaGCAGTGATAAAACTGGTGGCGGTGAAGCAGGCG
TTCATTCTGATGTGCAGGGTGAAGGAGGCGTTGTCAAAGAGGAAGAGAGG
TTCCGTGAAGGAGCGCTTTACGACGAAGACATGTACGAACGAGACACGGA
ACCGCCCTCCTCCACACAGATGTTAAGTTACACACAAATGTTACAAGGTG
ATGATGATTATAGTATGGATACTGGCCAATTCTACGATGAAGAAGAATTT
AATGTTTATGCTTGAGAATTGAAAATCATAAATTCTCTTCGGATTTGATC
ACACCTTTTTTACGCTAGCTAAGGGCCCTAAGGTTTGTTAAGAGGATTAA
GAGAATTTGGTTCAAgtttacagtggagtctccataactcgaacacgcat
gggaaacacaaatttgttcgagctaaggatattttaaattatggagtaag
atttataagcattgttaactgaagggacaacaaaattgttcgagttaaag
aggctGCACTGTATATAACAGTTCTATCTATCATCTTTTCAACGCAATGA
CTTCAGACATACGATGCTTTGTCTCTTGTAAAGTCGAACCCAAACTGTAT
GTAGCTAGCATGTGACCATGAAATGTGACGCCCTCGGCAATCTTGTATTT
TCATTAACTTGTAAGTCACTTTTATTGCTAGGATATGAGCCTAATTGTAC
ACATATAAAAAATACTCTATTGTACACGGTTTAATGGTAGTCGGTAGTCT
GTTCCTTTCTTATCCTATTTTACAGTCTGTTCCTGTAAAGAATCCTGC Run BLAST on NCBI transcript from alignment at sc0000145:335816..338613+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00012515 ID=TCONS_00012515|Name=TCONS_00012515|organism=Clytia hemisphaerica|type=transcript|length=2798bp|location=Sequence derived from alignment at sc0000145:335816..338613+ (Clytia hemisphaerica)
cattacagggtaaaatagaaaaataaataaacaaacaaataaagaaTGCT
ACCTTGGATCCAGCCTTTTTTAAAGCGACCACAGTCAATCATGAATATGT
GCAGAGCTTGTTATTCATCAACAAACTTTCCAACAACATGCCCTGGTGCA
AATTATTTCAAAGAAGGCGAAGAAACCCAGTTAAAACCCGATTCGGAATA
CCCGGATTGGTTGTGGACCCTGGGTGGCCCTAAACGTGAATTCAAAGACA
TGTCACCCGAGGTTGATGGGAAAGCATTTTTCAAAAGAgaacgaaaaatg
aaaattcgagagcAGAATATGATTcgtaaacaaagaagattttaatgtgt
ttgaaaattctttttttgtggatgttgtatatttttcatattttttagat
cttttttttataatttccatGTAACTACAAGAGCTATTACATTAAGTTTT
GCCTCAAAGATTGCTTGCATTTTGACGGTTACTGTAGCATAAGTGTCttc
gaattttgaaaaagtctCCTTTGGATAATTTTTTCATCGCTTATGAAATG
TGGTTTAAATTGTCGAAATTCTATGGCTCTTATATAGTGGTTCAACTCTC
TGCACTCTGTAAGGAAACTCaacatcattttttttcacCAATTACTGATC
ATAAATTCAAACCTTTTTTATTTGGTTATTTATTTTCAGTTAAATAAAAA
TGGAAGTCAAGATTGAAGATGAGATACAGAATGACCCATCACGTTTCAAA
AAAGTCACAACCAAAAGGCTGGTCTTCATCGAATACCCTGGGTTCATAAA
GAATGTAGACAAAATGCTGGCAACCCTGGGTggtgaagaaaaaatttctg
aaacttATCGGAGCGGTAAACAACGTCTTCAAATGACGTATCGACCTGAA
GATTTAAATGCTCATAACGCATGCGCCGATTTGCTACCATTTACTGGTTT
ATTGTTAAAAGTACGGCGCCGAAGAAAGAAAGGAACTGATGAATTCGAAT
ACGAACAAGACATTGTAGGTGTATCACGTGATCGGTATCGGTTCCAGACT
CTCATGGATTATCAATATTTGACACCTGAACCGCTTTGGAATTATTTTAA
ATCAATTCATACTAGTGAGCTAGGGAACACTGACTTTCCACCTTATTTTG
CACCGCCTGTCTTCGCGAGACTCGATTCTGCTGGAGTTTACCAATACAAA
CCGGATCTAGTTACCGGGATTAAAACAGTTGCTAAAGCGCCGGAAATCGG
TATTGATTCTATACGGAAGCGTCGTCATACAGAGTCTATGGCTGCCCTTT
ATTCAAGTGCAGATGTGCCAAGTAAACCTACAGAAAAAGCTTGTACcatt
attgaaaatttgaataaaggtCCAGATGCGGATGCAATAAAACAACTCGA
ACTTATGTTTAACGAGAGACCGTTATGGTCCAAGCTTGCAATATCATGTT
TGGTGGATGTCACTCCTGAGCGATTGAAGAAAGTCTTACAGTATTTTGCT
TATTACTGGTTAAGTGGACCTTGGAGGACCCTTTGGTGTCGCATGGGCTA
CGACCCGAGAAAAGATCCGAAAGCTAAACGTTATCAAATGGTTGAGTTTC
GTTTGAGACGATCAAAAGAGAACAAGAAATGCTATAAAATGATGGTACCC
GCTCGAAGATCCAATAAAGATTACTTAcctcgtaatttgagaaatatcGT
GTCCAGGGCACCGGCCTCAAAGTCAGTCCTCGCCGCCTGTAATGAGCCAG
AGAACAAAGAAGAAGGTGATAAAGAGCCGTATATTTTTCATCCAAATAAA
ATGATTCATTCGCGGAGTATGATGTTACAATTGTGTGATATTCACGACCC
AGCTGTTCAGAAAATCATCGTTGAGAATGACGGTATGGAAACCAGGTGCG
ATGAGAGAGAGGGATGGTTTCCACAAGGTACAATGGGCCGGATCCGTAAT
GAGATGACTAAAACGGTTGACGCCTATTTTGAGAGGCAATACGAgaaaca
aaaatctgaaaatcttaGCAGTGATAAAACTGGTGGCGGTGAAGCAGGCG
TTCATTCTGATGTGCAGGGTGAAGGAGGCGTTGTCAAAGAGGAAGAGAGG
TTCCGTGAAGGAGCGCTTTACGACGAAGACATGTACGAACGAGACACGGA
ACCGCCCTCCTCCACACAGATGTTAAGTTACACACAAATGTTACAAGGTG
ATGATGATTATAGTATGGATACTGGCCAATTCTACGATGAAGAAGAATTT
AATGTTTATGCTTGAGAATTGAAAATCATAAATTCTCTTCGGATTTGATC
ACACCTTTTTTACGCTAGCTAAGGGCCCTAAGGTTTGTTAAGAGGATTAA
GAGAATTTGGTTCAAgtttacagtggagtctccataactcgaacacgcat
gggaaacacaaatttgttcgagctaaggatattttaaattatggagtaag
atttataagcattgttaactgaagggacaacaaaattgttcgagttaaag
aggctGCACTGTATATAACAGTTCTATCTATCATCTTTTCAACGCAATGA
CTTCAGACATACGATGCTTTGTCTCTTGTAAAGTCGAACCCAAACTGTAT
GTAGCTAGCATGTGACCATGAAATGTGACGCCCTCGGCAATCTTGTATTT
TCATTAACTTGTAAGTCACTTTTATTGCTAGGATATGAGCCTAATTGTAC
ACATATAAAAAATACTCTATTGTACACGGTTTAATGGTAGTCGGTAGTCT
GTTCCTTTCTTATCCTATTTTACAGTCTGTTCCTGTAAAGAATCCTGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00012515-exon-sc0000145-1491911889:335816..338613 | TCONS_00012515-exon-sc0000145-1491911889:335816..338613 | Clytia hemisphaerica | exon |
| TCONS_00012515-exon-sc0000145-1510915933:335816..338613 | TCONS_00012515-exon-sc0000145-1510915933:335816..338613 | Clytia hemisphaerica | exon |
| TCONS_00012515-exon-sc0000145-1575043694:335816..338613 | TCONS_00012515-exon-sc0000145-1575043694:335816..338613 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000145 | supercontig | sc0000145:335816..338613 + |
Blast
BLAST of TCONS_00012515 vs. Swiss-Prot (Human)
Match: TF3C5 (General transcription factor 3C polypeptide 5 OS=Homo sapiens GN=GTF3C5 PE=1 SV=2) HSP 1 Score: 216.083 bits (549), Expect = 1.651e-60 Identity = 150/466 (32.19%), Postives = 230/466 (49.36%), Query Frame = 1
Query: 763 KRLVFIEYPGFIKNVDKMLATLGGEEKISETYRSGKQRLQMTYRPEDLNAHNACADLLPFTGX-----XXXXXXXXXXGTD---EFEYEQDIVGVSRDRYRFQTLMDYQYLTPEPLWNYFKSIHTS-------------ELGNTDFPPYFAPPVFARLDSAGVYQYKPDLV--TGIKTVAKAPEIGIDSIRKRRHTESMAALYSSADVPSKPTEKACTIIENLNKGP-DADAIKQLELMFNERPLWSKLAISCLVDVTPERLKKVLQYFAYYWLSGPWRTLWCRMGYDPRKDPKAKRYQMVEFRLRRS-KENKKCYKMMVPARRSNKDY-LPRNLRNIVSR-----------APASKSVLAACNEPENKEEGDKEPYIFHPNKMIHSRSMMLQLCDIHDPAVQKIIVENDGMETRCDEREGWFPQGTMGRIRNEMTKTVDAYFERQYEKQKSENL--SSDKTGGGE 2043
+R+V +EYPG +++V KML TLGGEE +S Y +RL++ +RP+D H CA+ + L R++ GT+ E ++ +I+G+ Y+FQ + D+QYL + HTS + + P Y PP+F+RLD+ Y Y+P+ G + E I R RR ++ + +VP +P E A + P D ++L +F+ RP+WS+ A+ + V P++LK +L + AYY ++GPWR+LW R GYDPRK+P AK YQ+++FR+R K + V A+RS +Y LP ++ S+ P+ S A +K + YIF + R M QLCD++ +QKII NDG E C ER+GW T +R+ M+ + RQ + K L SS K GG+
Sbjct: 22 RRMVCVEYPGVVRDVAKMLPTLGGEEGVSRIYADPTKRLELYFRPKDPYCHPVCANRFSTSSLLLRIRKRTRRQKGVLGTEAHSEVTFDMEILGIISTIYKFQGMSDFQYLA---VHTEAGGKHTSMYDKVLMLRPEKEAFFHQELPLYIPPPIFSRLDAPVDYFYRPETQHREGYNNPPISGENLIGLSRARRPHNAIFVNFEDEEVPKQPLEAAAQTWRRVCTNPVDRKVEEELRKLFDIRPIWSRNAVKANISVHPDKLKVLLPFIAYYMITGPWRSLWIRFGYDPRKNPDAKIYQVLDFRIRCGMKHGYAPSDLPVKAKRSTYNYSLPITVKKTSSQLVTMHDLKQGLGPSGTS--GARKPASSKYKLKDSVYIFREGALPPYRQMFYQLCDLNVEELQKIIHRNDGAENSCTERDGWCLPKTSDELRDTMSLMI-----RQTIRSKRPALFSSSAKADGGK 477
The following BLAST results are available for this feature:
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