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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00012514 ID=TCONS_00012514|Name=TCONS_00012514|organism=Clytia hemisphaerica|type=transcript|length=1928bpRun BLAST on NCBI protein sequence of TCONS_00012514-protein >TCONS_00012514-protein ID=TCONS_00012514-protein|Name=TCONS_00012514-protein|organism=Clytia hemisphaerica|type=polypeptide|length=360bp MGDIKRNLVVAFVDFLKSEIQSGQLGEDAAEGLEVAMQCLESAYSIEGITRun BLAST on NCBI transcript from alignment at sc0000145:321917..335666+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00012514 ID=TCONS_00012514|Name=TCONS_00012514|organism=Clytia hemisphaerica|type=transcript|length=13750bp|location=Sequence derived from alignment at sc0000145:321917..335666+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000145:321917..335666+ >TCONS_00012514 ID=TCONS_00012514|Name=TCONS_00012514|organism=Clytia hemisphaerica|type=CDS|length=11913bp|location=Sequence derived from alignment at sc0000145:321917..335666+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00012514 vs. Swiss-Prot (Human)
Match: SGTB (Small glutamine-rich tetratricopeptide repeat-containing protein beta OS=Homo sapiens GN=SGTB PE=1 SV=1) HSP 1 Score: 175.637 bits (444), Expect = 3.273e-49 Identity = 102/250 (40.80%), Postives = 149/250 (59.60%), Query Frame = 3
Query: 63 MGDIKRNLVVAFVDFLKSEIQSGQLGEDAAEGLEVAMQCLESAYSIE------GITPPHGTDLLNIYQENCSPAPQTNKGPSXXXXXXXXXXXXXGNGLMKEANYSGAVDCYTKAIKLDSRNAIYYCNRGAAYTKLEKHTQAVDDCKEAIRIDPSYGKAYGRMGLAHLANKEYQKSIDSYEHALTLEPENASYKTNLNLAKDQLKXXXXXXXXXXXXLAGLDINSLLSNPAVMNMAQNFMTNPAMQNMFS 794
M IK +LV A + FL+ + Q D E LEVA+QCLE+ + I ++ P + + +N P +N P + K +++ GN MKE NY+ AVDCYT+AI+LD NA+YYCNR AA +KL +T A+ DC++AI ID Y KAYGRMGLA A ++++++ SY+ AL L+PEN SYK+NL +A+ +L+ T D+ SL++NPA ++MA + M NP +Q + S
Sbjct: 1 MSSIK-HLVYAVIRFLREQSQMDTYTSDEQESLEVAIQCLETVFKISPEDTHLAVSQPLTEMFTSSFCKN-DVLPLSNSVPEDVGKADQLKDE--GNNHMKEENYAAAVDCYTQAIELDPNNAVYYCNRAAAQSKLGHYTDAIKDCEKAIAIDSKYSKAYGRMGLALTALNKFEEAVTSYQKALDLDPENDSYKSNLKIAEQKLREVSSPTGTGL----SFDMASLINNPAFISMAASLMQNPQVQQLMS 242 The following BLAST results are available for this feature:
BLAST of TCONS_00012514 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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